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Yafeng Deng

Publications and source records attributed to Yafeng Deng.

At least 19 recordsLinked to original sources

JIT-Agent: Scaling Harness Intelligence via Just-in-Time Harness Evolution

Agent capability is not determined by the model alone. The agent harness, encompassing memory management, planning strategy, action protocol, and tool/skill orchestration, can dominate the contribution of the underlying foundation model. Yet harness design remains manual, task-specific, and fundamentally unscalable. We present JIT-Agent, a harness intelligence model trained to synthesize task-adaptive agent harnesses on the fly for arbitrary off-the-shelf agentic LLMs. We formalize the agent harness as a composable, machine-generatable artifact governed by a fixed four-module protocol, and train JIT-Agent to customize harnesses for a given task at hand, repair harnesses for stable and reliable execution, and self-evolve by distilling performance signals from an expanding archive of prior harness configurations. Equipped with JIT-Agent as a harness helper, DeepSeek-V4-Flash surpasses GPT-5.6 on DeepSearchQA (+9.1) and OdysseyBench (+4.3), while the already strong GLM-5.2 gains up to +20.2 points. Across controlled evaluations, JIT-Agent-generated harnesses are performance-competitive with mature agent runtimes such as OpenCode and Claude Code and consistently improve multi-scale model families of DeepSeek V4, Mimo-V2.5, and Qwen3.6. To our knowledge, JIT-Agent is the first model purpose-built for just-in-time harness generation, establishing harness intelligence as a trainable, transferable, and compounding dimension of agent capability orthogonal to model scaling.

cs.CL

DASH: Divergence-Adaptive Supervision Horizons for On-Policy Self-Distillation of Reasoning Models

Reinforcement learning with verifiable rewards (RLVR) improves the reasoning capabilities of large language models using automatically verifiable outcome signals, but these signals are typically sparse and at the sequence-level. On-policy self-distillation (OPSD) mitigates this sparsity by querying a privileged teacher at student-visited prefixes and providing dense token-level distributional supervision. Although this dense supervision alleviates signal sparsity, we find that standard OPSD still underexploits the temporal structure of the rollout. It assigns every local divergence the same coefficient, regardless of its position or the divergence sequence in which it occurs. In on-policy autoregressive generation, the same divergence magnitude can follow different discrepancy histories, reflecting different evolutions of the mismatch between the teacher and student. Since the local scalar alone cannot distinguish these temporal contexts, standard OPSD cannot adapt its token-level weights to the realized discrepancy sequence. To address this limitation, we propose Divergence-Adaptive Supervision Horizons (DASH). DASH maps the gap between each local distillation signal and the sequence-level mean to an adaptive propagation gate and then uses these gates to control backward multi-step aggregation. By doing so, DASH adjusts token-level supervision weights according to how local divergences evolve during generation. Experiments on three mathematical reasoning benchmarks across three model scales show that DASH improves over our matched vanilla OPSD reruns on every benchmark at all three scales. DASH reuses the teacher and student distributions that OPSD already computes, so the gains require no additional teacher or student forward pass. Code: https://github.com/DBtxy/DASH-OPSD

cs.AI

CRAFT: Compression via Recursive Adaptive Fusion of Video Tokens for Vision-Language Models

In video understanding, vision-language models (VLMs) must ingest massive numbers of visual tokens, causing the computational and memory cost of the prefill stage to rise sharply. Such visual sequences are highly redundant along the spatio-temporal dimension, yet a high compression ratio is often accompanied by the loss of critical details. Existing token-compression methods either employ heuristic, training-free compression with limited content adaptivity or introduce additional modules that require expensive alignment training, leaving the trade-off between efficiency and adaptivity unresolved. To alleviate this limitation, we propose CRAFT: Compression via Recursive Adaptive Fusion of Video Tokens. CRAFT recursively merges tokens by decoupling parameter-free token selection from learnable token fusion: global similarity determines which tokens to merge, while a position-aware weighting module and a content-adaptive channel-wise gate learn how to fuse them. The whole compression pipeline is query-agnostic. Because every retained token is a linear combination of the original tokens, CRAFT preserves their true spatio-temporal coordinates and stays aligned with the pre-trained language model's input distribution. Experiments on multiple representative video benchmarks show that CRAFT consistently outperforms prior state-of-the-art token-compression methods. At about $8\times$ compression, it retains roughly $97\%$ of the backbone's average accuracy and shows significant efficiency improvement.

cs.CV

SkillCorpus: Consolidating and Evaluating the Open Skill Ecosystem for Real-World LLM Agents

Agent skills, SKILL files that package reusable procedural knowledge for an LLM agent, are a popular mechanism for extending agent capabilities. Public repositories now host them in large and growing numbers, yet these artifacts are fragmented, redundant, and uneven in quality, and their value in practice is unclear. A core question remains open, namely how to consolidate this open-source SKILL ecosystem into a single usable corpus, and what bounds its benefit on real-world agent tasks. We present SkillCorpus, a framework that aggregates, curates, matches, and evaluates the open skill ecosystem at scale. It filters ~821,000 crawled skills through a multi-stage pipeline into 96,401 skills organised by a 16-class taxonomy and three quality facets (utility, robustness, safety), and pairs them with a fine-tuned retrieval-and-selection stack that matches task-relevant skills. We evaluate end-to-end across three benchmarks (SkillsBench, GDPVal, QwenClawBench), two harnesses, and two open backbones with a frontier robustness check. Integrating SkillCorpus yields consistent gains across all three benchmarks, largest on SkillsBench (+7.5 pp). An operational analysis traces the gains to a coverage boundary and a harness boundary. SkillCorpus is, to our knowledge, the first end-to-end account of when a curated, retrieval-served community corpus improves real agent tasks, and where it does not. The dataset, models, and code are available at https://github.com/EverMind-AI/SkillCorpus.

cs.CL

HarnessBank: Semantic Gene-Bank Search with Gated Verification for Agent-Harness Self-Evolution

Large Language Models (LLMs) have enabled capable agents across diverse applications. Beyond the foundation model, the performance of an agent is governed by the surrounding agent harness, including prompts, tools, control loops, etc. Automatically evolving this harness offers a promising pathway to agent improvement, yet existing approaches typically rely on greedy candidate selection and noisy self-generated feedback, rendering their gains susceptible to search collapse, task-specific overfitting, and poor verifiability. To tackle these challenges, we introduce HarnessBank, a trustworthy agent-harness self-evolution framework that pairs a task agent with a separate evolver agent for iterative failure diagnosis, harness generation, and evolution verification. HarnessBank maintains a Harness Gene Bank composed of high-performing harnesses of different semantic coordinates. Those harnesses are reinvented, recombined, screened, and selected during the self-evolution procedure. Moreover, we propose a Gated Harness Screening mechanism to efficiently filter high-quality harnesses and reduce the cost of evaluating numerous offspring harnesses. Across seven agent benchmarks, HarnessBank produces consistent performance improvements from 5.1% to 15.4%. Cross-model experiments further verify that the improvements come from the model-specific self-evolving process, instead of a universally optimal harness. Our code will be publicly available upon acceptance.

cs.CL

EvoAgentBench: Benchmarking Agent Self-Evolution via Ability Transfer

Agent self-evolution in long-horizon LLM systems is largely procedural: useful experience is not merely stored information, but reusable procedures for searching, debugging, and verification. Yet current evaluations do not isolate this form of transfer. Agent benchmarks test single-episode task solving; memory benchmarks target information retention rather than procedural reuse. We introduce EvoAgentBench, a benchmark for agent self-evolution via Ability-guided transfer across four agentic domains: web research, algorithmic reasoning, software engineering, and knowledge work. EvoAgentBench extracts trace-grounded Abilities from agent executions, canonicalizes them into operational units, and builds domain-specific Ability Graphs linking tasks that share procedural overlap. By design, every test task is backed by verified training-side Ability support. Across a 528/267 train/test split, two scaffolds, and three backbones, curated Ability content transfers reliably across model families, but no current automatic method sustains positive gain in all settings. EvoAgentBench shifts self-evolution evaluation from aggregate accuracy comparison to fine-grained diagnosis of experience encoding, routing, and uptake. The benchmark is publicly available at https://huggingface.co/datasets/EverMind-AI/EvoAgentBench.

cs.AI

HyperMem: Hypergraph Memory for Long-Term Conversations

Long-term memory is essential for conversational agents to maintain coherence, track persistent tasks, and provide personalized interactions across extended dialogues. However, existing approaches as Retrieval-Augmented Generation (RAG) and graph-based memory mostly rely on pairwise relations, which can hardly capture high-order associations, i.e., joint dependencies among multiple elements, causing fragmented retrieval. To this end, we propose HyperMem, a hypergraph-based hierarchical memory architecture that explicitly models such associations using hyperedges. Particularly, HyperMem structures memory into three levels: topics, episodes, and facts, and groups related episodes and their facts via hyperedges, unifying scattered content into coherent units. Leveraging this structure, we design a hybrid lexical-semantic index and a coarse-to-fine retrieval strategy, supporting accurate and efficient retrieval of high-order associations. Experiments on the LoCoMo benchmark show that HyperMem achieves state-of-the-art performance with 92.73% LLM-as-a-judge accuracy, demonstrating the effectiveness of HyperMem for long-term conversations.

cs.CL

MSA: Memory Sparse Attention for Efficient End-to-End Memory Model Scaling to 100M Tokens

Long-term memory is a cornerstone of human intelligence. Enabling AI to process lifetime-scale information remains a long-standing pursuit in the field. Due to the constraints of full-attention architectures, the effective context length of large language models (LLMs) is typically limited to 1M tokens. Existing approaches, such as hybrid linear attention, fixed-size memory states (e.g., RNNs), and external storage methods like RAG or agent systems, attempt to extend this limit. However, they often suffer from severe precision degradation and rapidly increasing latency as context length grows, an inability to dynamically modify memory content, or a lack of end-to-end optimization. These bottlenecks impede complex scenarios like large-corpus summarization, Digital Twins, and long-history agent reasoning, while limiting memory capacity and slowing inference. We present Memory Sparse Attention (MSA), an end-to-end trainable, efficient, and massively scalable memory model framework. Through core innovations including scalable sparse attention and document-wise RoPE, MSA achieves linear complexity in both training and inference while maintaining exceptional stability, exhibiting less than 9% degradation when scaling from 16K to 100M tokens. Furthermore, KV cache compression, combined with Memory Parallel, enables 100M-token inference on 2xA800 GPUs. We also propose Memory Interleaving to facilitate complex multi-hop reasoning across scattered memory segments. MSA significantly surpasses frontier LLMs, state-of-the-art RAG systems, and leading memory agents in long-context benchmarks. These results demonstrate that by decoupling memory capacity from reasoning, MSA provides a scalable foundation to endow general-purpose models with intrinsic, lifetime-scale memory.

cs.CL

MIND: Unified Inquiry and Diagnosis RL with Criteria Grounded Clinical Supports for Psychiatric Consultation

Psychiatric consultation requires agents to elicit discriminative evidence, map uncertain narratives to diagnostic criteria, and decide when evidence suffices. Existing dialogue and retrieval-augmented systems condition policies on raw histories or appended passages, leaving observed evidence, missing checks, differentials, and support reliability entangled. We introduce MIND, a criteria-grounded evidence-state decision interface. At each turn, MIND constructs a typed state containing observed evidence, unresolved criterion checks, active differentials, criterion-linked supports, and reliability metadata. A training-split Psychiatric Reasoning Bank supplies gated supports, turning retrieval into state construction rather than prompt injection. The same state conditions action selection, process rewards, information-gain scoring, and trajectory rectification. Under EMR-grounded simulator protocols, MIND improves accuracy by 8.8 and 7.3 points over strong inference-only, RAG, and RL baselines, with gains transferring to public MDD-5k dialogues. Matched interventions attribute these gains to the shared state rather than prompt length, retrieval text, or formatting. MIND targets screening-level decision support, not autonomous diagnosis. Code is available at https://github.com/Lingxi-mental-health/MIND.{\AA}

cs.CL

LingxiDiagBench: A Multi-Agent Framework for Benchmarking LLMs in Chinese Psychiatric Consultation and Diagnosis

Mental disorders are highly prevalent worldwide, but the shortage of psychiatrists and the inherent subjectivity of interview-based diagnosis create substantial barriers to timely and consistent mental-health assessment. Progress in AI-assisted psychiatric diagnosis is constrained by the absence of benchmarks that simultaneously provide realistic patient simulation, clinician-verified diagnostic labels, and support for dynamic multi-turn consultation. We present LingxiDiagBench, a large-scale multi-agent benchmark that evaluates LLMs on both static diagnostic inference and dynamic multi-turn psychiatric consultation in Chinese. At its core is LingxiDiag-16K, a dataset of 16,000 EMR-aligned synthetic consultation dialogues designed to reproduce real clinical demographic and diagnostic distributions across 12 ICD-10 psychiatric categories. Through extensive experiments across state-of-the-art LLMs, we establish key findings: (1) although LLMs achieve high accuracy on binary depression--anxiety classification (up to 92.3%), performance deteriorates substantially for depression--anxiety comorbidity recognition (43.0%) and 12-way differential diagnosis (28.5%); (2) dynamic consultation often underperforms static evaluation, indicating that ineffective information-gathering strategies significantly impair downstream diagnostic reasoning; (3) consultation quality assessed by LLM-as-a-Judge shows only moderate correlation with diagnostic accuracy, suggesting that well-structured questioning alone does not ensure correct diagnostic decisions. We release LingxiDiag-16K and the full evaluation framework to support reproducible research at https://github.com/Lingxi-mental-health/LingxiDiagBench.

cs.AI

Evaluating Long-Horizon Memory for Multi-Party Collaborative Dialogues

Long-term conversational memory in practical LLM applications is inherently collaborative: information is produced by multiple participants, scattered across groups and channels, revised over time, and implicitly grounded in roles and social context. Yet there is currently no established benchmark that evaluates memory under interaction patterns resembling real-world deployment, as existing benchmarks largely focus on dyadic or single-topic dialogues. In this paper, we introduce EverMemBench, the first benchmark designed for long-horizon collaborative memory, built from multi-party, multi-group conversations spanning over one million tokens with dense cross-topic interleaving, temporally evolving decisions, and role-conditioned personas. EverMemBench evaluates memory systems using 2400 QA pairs across three dimensions essential for real applications: fine-grained recall, memory awareness, and user profile understanding. Our evaluation reveals fundamental limitations of current systems: multi-hop reasoning collapses under multi-party attribution even with oracle evidence (26% accuracy), temporal reasoning fails without explicit version semantics beyond timestamps, and memory awareness is bottlenecked by retrieval, as similarity-based methods miss implicitly relevant information. EverMemBench thus represents a concrete step toward realistic evaluation of LLM memory and a cornerstone benchmark for developing next-generation LLMs that reason over time, roles, and collaborative interaction structure. Our benchmark and code are publicly available at https://github.com/EverMind-AI/EverMemBench.

cs.CL

Beyond the Needle's Illusion: Decoupled Evaluation of Evidence Access and Use under Semantic Interference at 326M-Token Scale

Long-context LLM agents must access the right evidence from large environments and use it faithfully. However, the popular Needle-in-a-Haystack (NIAH) evaluation mostly measures benign span localization. The needle is near-unique, and the haystack is largely irrelevant. We introduce EverMemBench-S (EMB-S), an adversarial NIAH-style benchmark built on a 326M-token MemoryBank. While the full MemoryBank spans 326M tokens for retrieval-based (RAG) evaluation, we evaluate native long-context models only at scales that fit within each model's context window (up to 1M tokens in this work) to ensure a fair comparison. EMB-S pairs queries with collision-tested near-miss hard negatives and gold evidence sets spanning one or more documents, validated via human screening and LLM verification. We also propose a decoupled diagnostic protocol that reports evidence access (document-ID localization) separately from end-to-end QA quality under full-context prompting. This enables consistent diagnosis for both native long-context prompting and retrieval pipelines. Across a reference-corpus ladder from domain-isolated 64K contexts to a globally shared 326M-token environment, we observe a clear reality gap. Systems that saturate benign NIAH degrade sharply in evidence access under semantic interference. These results indicate that semantic discrimination, not context length alone, is the dominant bottleneck for long-context memory at scale.

cs.CL

EverMemOS: A Self-Organizing Memory Operating System for Structured Long-Horizon Reasoning

Large Language Models (LLMs) are increasingly deployed as long-term interactive agents, yet their limited context windows make it difficult to sustain coherent behavior over extended interactions. Existing memory systems often store isolated records and retrieve fragments, limiting their ability to consolidate evolving user states and resolve conflicts. We introduce EverMemOS, a self-organizing memory operating system that implements an engram-inspired lifecycle for computational memory. Episodic Trace Formation converts dialogue streams into MemCells that capture episodic traces, atomic facts, and time-bounded Foresight signals. Semantic Consolidation organizes MemCells into thematic MemScenes, distilling stable semantic structures and updating user profiles. Reconstructive Recollection performs MemScene-guided agentic retrieval to compose the necessary and sufficient context for downstream reasoning. Experiments on LoCoMo and LongMemEval show that EverMemOS achieves state-of-the-art performance on memory-augmented reasoning tasks. We further report a profile study on PersonaMem v2 and qualitative case studies illustrating chat-oriented capabilities such as user profiling and Foresight. Code is available at https://github.com/EverMind-AI/EverMemOS.

cs.AI

Discovery of novel antimicrobial peptides with notable antibacterial potency by a LLM-based foundation model

Large language models (LLMs) have shown remarkable advancements in chemistry and biomedical research, acting as versatile foundation models for various tasks. We introduce AMP-Designer, an LLM-based approach for swiftly designing novel antimicrobial peptides (AMPs) with desired properties. Within 11 days, AMP-Designer achieved the de novo design of 18 AMPs with broad-spectrum activity against Gram-negative bacteria. In vitro validation revealed a 94.4% success rate, with two candidates demonstrating exceptional antibacterial efficacy, minimal hemotoxicity, stability in human plasma, and low potential to induce resistance, as evidenced by significant bacterial load reduction in murine lung infection experiments. The entire process, from design to validation, concluded in 48 days. AMP-Designer excels in creating AMPs targeting specific strains despite limited data availability, with a top candidate displaying a minimum inhibitory concentration of 2.0 {\mu}g/ml against Propionibacterium acnes. Integrating advanced machine learning techniques, AMP-Designer demonstrates remarkable efficiency, paving the way for innovative solutions to antibiotic resistance.

q-bio.BM

AAVDiff: Experimental Validation of Enhanced Viability and Diversity in Recombinant Adeno-Associated Virus (AAV) Capsids through Diffusion Generation

Recombinant adeno-associated virus (rAAV) vectors have revolutionized gene therapy, but their broad tropism and suboptimal transduction efficiency limit their clinical applications. To overcome these limitations, researchers have focused on designing and screening capsid libraries to identify improved vectors. However, the large sequence space and limited resources present challenges in identifying viable capsid variants. In this study, we propose an end-to-end diffusion model to generate capsid sequences with enhanced viability. Using publicly available AAV2 data, we generated 38,000 diverse AAV2 viral protein (VP) sequences, and evaluated 8,000 for viral selection. The results attested the superiority of our model compared to traditional methods. Additionally, in the absence of AAV9 capsid data, apart from one wild-type sequence, we used the same model to directly generate a number of viable sequences with up to 9 mutations. we transferred the remaining 30,000 samples to the AAV9 domain. Furthermore, we conducted mutagenesis on AAV9 VP hypervariable regions VI and V, contributing to the continuous improvement of the AAV9 VP sequence. This research represents a significant advancement in the design and functional validation of rAAV vectors, offering innovative solutions to enhance specificity and transduction efficiency in gene therapy applications.

cs.AI

CCMB: A Large-scale Chinese Cross-modal Benchmark

Vision-language pre-training (VLP) on large-scale datasets has shown premier performance on various downstream tasks. In contrast to plenty of available benchmarks with English corpus, large-scale pre-training datasets and downstream datasets with Chinese corpus remain largely unexplored. In this work, we build a large-scale high-quality Chinese Cross-Modal Benchmark named CCMB for the research community, which contains the currently largest public pre-training dataset Zero and five human-annotated fine-tuning datasets for downstream tasks. Zero contains 250 million images paired with 750 million text descriptions, plus two of the five fine-tuning datasets are also currently the largest ones for Chinese cross-modal downstream tasks. Along with the CCMB, we also develop a VLP framework named R2D2, applying a pre-Ranking + Ranking strategy to learn powerful vision-language representations and a two-way distillation method (i.e., target-guided Distillation and feature-guided Distillation) to further enhance the learning capability. With the Zero and the R2D2 VLP framework, we achieve state-of-the-art performance on twelve downstream datasets from five broad categories of tasks including image-text retrieval, image-text matching, image caption, text-to-image generation, and zero-shot image classification. The datasets, models, and codes are available at https://github.com/yuxie11/R2D2

cs.CV

Infinite Physical Monkey: Do Deep Learning Methods Really Perform Better in Conformation Generation?

Conformation Generation is a fundamental problem in drug discovery and cheminformatics. And organic molecule conformation generation, particularly in vacuum and protein pocket environments, is most relevant to drug design. Recently, with the development of geometric neural networks, the data-driven schemes have been successfully applied in this field, both for molecular conformation generation (in vacuum) and binding pose generation (in protein pocket). The former beats the traditional ETKDG method, while the latter achieves similar accuracy compared with the widely used molecular docking software. Although these methods have shown promising results, some researchers have recently questioned whether deep learning (DL) methods perform better in molecular conformation generation via a parameter-free method. To our surprise, what they have designed is some kind analogous to the famous infinite monkey theorem, the monkeys that are even equipped with physics education. To discuss the feasibility of their proving, we constructed a real infinite stochastic monkey for molecular conformation generation, showing that even with a more stochastic sampler for geometry generation, the coverage of the benchmark QM-computed conformations are higher than those of most DL-based methods. By extending their physical monkey algorithm for binding pose prediction, we also discover that the successful docking rate also achieves near-best performance among existing DL-based docking models. Thus, though their conclusions are right, their proof process needs more concern.

q-bio.BM

StarGraph: Knowledge Representation Learning based on Incomplete Two-hop Subgraph

Conventional representation learning algorithms for knowledge graphs (KG) map each entity to a unique embedding vector, ignoring the rich information contained in the neighborhood. We propose a method named StarGraph, which gives a novel way to utilize the neighborhood information for large-scale knowledge graphs to obtain entity representations. An incomplete two-hop neighborhood subgraph for each target node is at first generated, then processed by a modified self-attention network to obtain the entity representation, which is used to replace the entity embedding in conventional methods. We achieved SOTA performance on ogbl-wikikg2 and got competitive results on fb15k-237. The experimental results proves that StarGraph is efficient in parameters, and the improvement made on ogbl-wikikg2 demonstrates its great effectiveness of representation learning on large-scale knowledge graphs. The code is now available at \url{https://github.com/hzli-ucas/StarGraph}.

cs.CL