arXiv subjects

Yakun Yuan

Publications and source records attributed to Yakun Yuan.

18 recordsLinked to original sources

arXiv2026

Autonomous Optimization of Complex Oxides for Thermochemical Fuel Production

Two-step thermochemical fuel production, including H2O and CO2 splitting, offers a promising route to sustainable fuel manufacturing, with performance governed by redox-active oxides that enable cyclic reduction-oxidation reactions. Maximizing thermal-to-fuel conversion efficiency demands materials that simultaneously satisfy multiple stringent thermodynamic and kinetic targets. Addressing these requirements has increasingly driven materials design toward complex, multi-cation oxides, such as mixed-cation fluorites, perovskites, and high-entropy oxides, wherein composition, defect chemistry, phase stability, and morphology should be co-optimized. This creates a challenging materials optimization problem that is poorly suited to traditional trial-and-error approaches. In this review, we argue that thermochemical fuel production provides a compelling frontier for autonomous materials design and optimization. We first examine why redox-active complex oxides are difficult to develop, owing to multidimensional phase spaces, harsh operating conditions, and competing functional targets. We then discuss how high-throughput computation, automated synthesis, characterization and testing, and machine learning can be integrated into closed-loop workflows to address these challenges. Building on broader oxide materials research, we organize recent progress into a capability roadmap for complex-oxide optimization, spanning compositionally diverse synthesis, operando characterization, robotic testing, operation-condition computation, and multi-objective optimization. Finally, we outline key experimental, computational, and data challenges for building self-improving materials development platforms for materials development in thermochemical fuel production.

cond-mat.mtrl-sci↗

arXiv2026

Three-dimensional imaging of individual carbon atoms

Carbon is fundamental to science and technology due to its diverse bonding configurations, structural versatility, and essential role in defining the mechanical, chemical, electronic, and quantum properties of materials. However, direct three-dimensional (3D) imaging of individual carbon atoms remains a long-standing challenge. Here, we use twisted bilayer graphene (TBG) as a model system and demonstrate ptychographic atomic electron tomography (pAET) for determining the 3D atomic coordinates of individual carbon atoms with a precision of 0.11 angstrom. The resulting 3D atomic model uncovers chiral lattice distortions driven by van der Waals interactions that exhibit meron-like and skyrmion-like structural textures. These findings provide direct insight into the interplay between 3D chiral lattice deformation and electronic properties in moire-engineered carbon systems. Beyond TBG, pAET offers a versatile approach for 3D atomic-scale imaging of carbon-based and other light-element materials that are central to advances in physics, chemistry, materials science, and nanotechnology.

cond-mat.mtrl-sci↗

arXiv2025

Crystal nucleation and growth in high-entropy alloys revealed by atomic electron tomography

High-entropy alloys (HEAs) balance mixing entropy and intermetallic phase formation enthalpy, creating a vast compositional space for structural and functional materials (1-6). They exhibit exceptional strength-ductility trade-offs in metallurgy (4-10) and near-continuum adsorbate binding energies in catalysis (11-16). A deep understanding of crystal nucleation and growth in HEAs is essential for controlling their formation and optimizing their structural and functional properties. However, atomic-scale nucleation in HEAs challenges traditional theories based on one or two principal elements (17-23). The intricate interplay of structural and chemical orders among multiple principal elements further obscures our understanding of nucleation pathways (5,24-27). Due to the lack of direct three-dimensional (3D) atomic-scale observations, previous studies have relied on simulations and indirect measurements (28-32), leaving HEA nucleation and growth fundamentally elusive. Here, we advance atomic electron tomography (33,34) to resolve the 3D atomic structure and chemical composition of 7,662 HEA and 498 medium-entropy alloy nuclei at different nucleation stages. We observe local structural order that decreases from core to boundary, correlating with local chemical order. As nuclei grow, structural order improves. At later stages, most nuclei coalesce without misorientation, while some form coherent twin boundaries. To explain these experimental observations, we propose the gradient nucleation pathways model, in which the nucleation energy barrier progressively increases through multiple evolving intermediate states. We expect these findings to not only provide fundamental insights into crystal nucleation and growth in HEAs, but also offer a general framework for understanding nucleation mechanisms in other materials.

cond-mat.mtrl-sci↗

arXiv2023

Three-dimensional atomic positions and local chemical order of medium- and high-entropy alloys

Medium- and high-entropy alloys (M/HEAs) mix multiple principal elements with near-equiatomic composition and represent a paradigm-shift strategy for designing new materials for metallurgy, catalysis, and other fields. One of the core hypotheses of M/HEAs is lattice distortion. However, experimentally determining the 3D local lattice distortion in M/HEAs remains a challenge. Additionally, the presumed random elemental mixing in M/HEAs has been questioned by atomistic simulations, energy dispersive x-ray spectroscopy (EDS), and electron diffraction, which suggest the existence of local chemical order in M/HEAs. However, the 3D local chemical order has eluded direct experimental observation since the EDS elemental maps integrate the composition of atomic columns along the zone axes, and the diffuse reflections/streaks in electron diffraction of M/HEAs may originate from planar defects. Here, we determine the 3D atomic positions of M/HEA nanocrystals using atomic electron tomography, and quantitatively characterize the local lattice distortion, strain tensor, twin boundaries, dislocation cores, and chemical short-range order (CSRO) with unprecedented 3D detail. We find that the local lattice distortion and strain tensor in the HEAs are larger and more heterogeneous than in the MEAs. We observe CSRO-mediated twinning in the MEAs. that is, twinning occurs in energetically unfavoured CSRO regions but not in energetically favoured CSRO ones. This observation confirms the atomistic simulation results of the bulk CrCoNi MEA and represents the first experimental evidence of correlating local chemical order with structural defects in any material system. We expect that this work will not only expand our fundamental understanding of this important class of materials, but also could provide the foundation for tailoring M/HEA properties through lattice distortion and local chemical order.

cond-mat.mtrl-sci↗

arXiv2022

Thermodynamic and electron-transport properties of Ca3Ru2O7 from first-principles phonon calculations and Boltzmann transport theory

This work demonstrates a first-principles-based approach to obtaining finite temperature thermal and electronic transport properties which can be employed to model and understand mesoscale structural evolution during electronic, magnetic, and structural phase transitions. A computationally tractable model was introduced to estimate the temperature dependence of the electron relaxation time. The model is applied to Ca3Ru2O7 with a focus on understanding its electrical resistivity across the electronic phase transition at 48 K. A quasiharmonic phonon approach to the lattice vibrations was employed to account for thermal expansion while the Boltzmann transport theory including spin-orbit coupling was used to calculate the electron-transport properties, including the temperature dependence of electrical conductivity.

cond-mat.mtrl-sci↗

arXiv2022

Atomic-scale identification of the active sites of nanocatalysts

Alloy nanocatalysts have found broad applications ranging from fuel cells to catalytic converters and hydrogenation reactions. Despite extensive studies, identifying the active sites of nanocatalysts remains a major challenge due to the heterogeneity of the local atomic environment. Here, we advance atomic electron tomography to determine the 3D local atomic structure, surface morphology and chemical composition of PtNi and Mo-doped PtNi nanocatalysts. Using machine learning trained by density functional theory calculations, we identify the catalytic active sites for the oxygen reduction reaction from experimental 3D atomic coordinates, which are corroborated by electrochemical measurements. By quantifying the structure-activity relationship, we discover a local environment descriptor to explain and predict the catalytic active sites at the atomic level. The ability to determine the 3D atomic structure and chemical species coupled with machine learning is expected to expand our fundamental understanding of a wide range of nanocatalysts.

physics.chem-ph↗

arXiv2021

Capturing 3D atomic defects and phonon localization at the 2D heterostructure interface

The 3D local atomic structures and crystal defects at the interfaces of heterostructures control their electronic, magnetic, optical, catalytic and topological quantum properties, but have thus far eluded any direct experimental determination. Here we determine the 3D local atomic positions at the interface of a MoS2-WSe2 heterojunction with picometer precision and correlate 3D atomic defects with localized vibrational properties at the epitaxial interface. We observe point defects, bond distortion, atomic-scale ripples and measure the full 3D strain tensor at the heterointerface. By using the experimental 3D atomic coordinates as direct input to first principles calculations, we reveal new phonon modes localized at the interface, which are corroborated by spatially resolved electron energy-loss spectroscopy. We expect that this work will open the door to correlate structure-property relationships of a wide range of heterostructure interfaces at the single-atom level.

cond-mat.mtrl-sci↗

arXiv2021

Subterahertz collective dynamics of polar vortices

The collective dynamics of topological structures have been of great interest from both fundamental and applied perspectives. For example, the studies of dynamical properties of magnetic vortices and skyrmions not only deepened the understanding of many-body physics but also led to potential applications in data processing and storage. Topological structures constructed from electrical polarization rather than spin have recently been realized in ferroelectric superlattices, promising for ultrafast electric-field control of topological orders. However, little is known about the dynamics of such complex extended nanostructures which in turn underlies their functionalities. Using terahertz-field excitation and femtosecond x-ray diffraction measurements, we observe ultrafast collective polarization dynamics that are unique to polar vortices, with orders of magnitude higher frequencies and smaller lateral size than those of experimentally realized magnetic vortices. A previously unseen soft mode, hereafter referred to as a vortexon, emerges as transient arrays of nanoscale circular patterns of atomic displacements, which reverse their vorticity on picosecond time scales. Its frequency is significantly reduced at a critical strain, indicating a condensation of structural dynamics. First-principles-based atomistic calculations and phase-field modeling reveal the microscopic atomic arrangements and frequencies of the vortex modes. The discovery of subterahertz collective dynamics in polar vortices opens up opportunities for applications of electric-field driven data processing in topological structures with ultrahigh speed and density.

cond-mat.mes-hall↗

arXiv2020

Direct observation of 3D atomic packing in monatomic amorphous materials

Liquids and solids are two fundamental states of matter. However, due to the lack of direct experimental determination, our understanding of the 3D atomic structure of liquids and amorphous solids remained speculative. Here we advance atomic electron tomography to determine for the first time the 3D atomic positions in monatomic amorphous materials, including a Ta thin film and two Pd nanoparticles. We observe that pentagonal bipyramids are the most abundant atomic motifs in these amorphous materials. Instead of forming icosahedra, the majority of pentagonal bipyramids arrange into networks that extend to medium-range scale. Molecular dynamic simulations further reveal that pentagonal bipyramid networks are prevalent in monatomic amorphous liquids, which rapidly grow in size and form icosahedra during the quench from the liquid state to glass state. The experimental method and results are expected to advance the study of the amorphous-crystalline phase transition and glass transition at the single-atom level.

cond-mat.mtrl-sci↗

arXiv2020

Determining the three-dimensional atomic structure of a metallic glass

Amorphous solids such as glass are ubiquitous in our daily life and have found broad applications ranging from window glass and solar cells to telecommunications and transformer cores. However, due to the lack of long-range order, the three-dimensional (3D) atomic structure of amorphous solids have thus far defied any direct experimental determination without model fitting. Here, using a multi-component metallic glass as a proof-of-principle, we advance atomic electron tomography to determine the 3D atomic positions in an amorphous solid for the first time. We quantitatively characterize the short-range order (SRO) and medium-range order (MRO) of the 3D atomic arrangement. We find that although the 3D atomic packing of the SRO is geometrically disordered, some SRO connect with each other to form crystal-like networks and give rise to MRO. We identify four crystal-like MRO networks - face-centred cubic, hexagonal close-packed, body-centered cubic and simple cubic - coexisting in the sample, which show translational but no orientational order. These observations confirm that the 3D atomic structure in some parts of the sample is consistent with the efficient cluster packing model. Looking forward, we anticipate this experiment will open the door to determining the 3D atomic coordinates of various amorphous solids, whose impact on non-crystalline solids may be comparable to the first 3D crystal structure solved by x-ray crystallography over a century ago.

cond-mat.dis-nn↗

arXiv2020

RESIRE: real space iterative reconstruction engine for Tomography

Tomography has made a revolutionary impact on diverse fields, ranging from macro-/mesoscopic scale studies in biology, radiology, plasma physics to the characterization of 3D atomic structure in material science. The fundamental of tomography is to reconstruct a 3D object from a set of 2D projections. To solve the tomography problem, many algorithms have been developed. Among them are methods using transformation technique such as computed tomography (CT) based on Radon transform and Generalized Fourier iterative reconstruction (GENFIRE) based on Fourier slice theorem (FST), and direct methods such as Simultaneous Iterative Reconstruction Technique (SIRT) and Simultaneous Algebraic Reconstruction Technique (SART) using gradient descent and algebra technique. In this paper, we propose a hybrid gradient descent to solve the tomography problem by combining Fourier slice theorem and calculus of variations. By using simulated and experimental data, we show that the state-of-art RESIRE can produce more superior results than previous methods; the reconstructed objects have higher quality and smaller relative errors. More importantly, RESIRE can deal with partially blocked projections rigorously where only part of projection information are provided while other methods fail. We anticipate RESIRE will not only improve the reconstruction quality in all existing tomographic applications, but also expand tomography method to a broad class of functional thin films. We expect RESIRE to find a broad applications across diverse disciplines.

math.OC↗

arXiv2019

Correlating 3D atomic defects and electronic properties of 2D materials with picometer precision

The exceptional electronic, optical and chemical properties of two-dimensional materials strongly depend on the 3D atomic structure and crystal defects. Using Re-doped MoS2 as a model, here we develop scanning atomic electron tomography (sAET) to determine the 3D atomic positions and crystal defects such as dopants, vacancies and ripples with a precision down to 4 picometers. We measure the 3D bond distortion and local strain tensor induced by single dopants for the first time. By directly providing experimental 3D atomic coordinates to density functional theory (DFT), we obtain more truthful electronic band structures than those derived from conventional DFT calculations relying on relaxed 3D atomic models, which is confirmed by photoluminescence measurements. We anticipate that sAET is not only generally applicable to the determination of the 3D atomic coordinates of 2D materials, heterostructures and thin films, but also could transform ab initio calculations by using experimental 3D atomic coordinates as direct input to better predict and discover new physical, chemical and electronic properties.

cond-mat.mtrl-sci↗

arXiv2019

Ultrafast quasiparticle dynamics in correlated semimetal Ca$_3$Ru$_2$O$_7$

The correlated polar semimetal Ca$_3$Ru$_2$O$_7$ exhibits a rich phase diagram including two magnetic transitions ($T_N$=56 K and $T_C$=48 K) with the appearance of an insulating-like pseudogap (at $T_C$). In addition, there is a crossover back to metallic behavior at $T^*$=30 K, the origin of which is still under debate. We utilized ultrafast optical pump optical probe spectroscopy to investigate quasiparticle dynamics as a function of temperature in this enigmatic quantum material. We identify two dynamical processes, both of which are influenced by the onset of the pseudogap. This includes electron-phonon relaxation and, below $T_C$, the onset of a phonon bottleneck hindering the relaxation of quasiparticles across the pseudogap. We introduce a gap-modified two-temperature model to describe the temperature dependence of electron-phonon thermalization, and use the Rothwarf-Taylor to model the phonon bottleneck. In conjunction with density functional theory, our experimental results synergistically reveal the origin of the $T$-dependent pseudogap. Further, our data and analysis indicate that $T^*$ emerges as a natural consequence of $T$-dependent gapping out of carriers, and does not correspond to a separate electronic transition. Our results highlight the value of low fluence ultrafast optics as a sensitive probe of low energy electronic structure, thermodynamic parameters, and transport properties of Ruddlesden-Popper ruthenates.

cond-mat.str-el↗

arXiv2018

Linear and nonlinear optical probe of the ferroelectric-like phase transition in a polar metal, LiOsO3

LiOsO3 is one of the first materials identified in a recent literature as a 'polar metal', a class of materials that are simultaneously noncentrosymmetric and metallic. In this work, the linear and nonlinear optical susceptibility of LiOsO3 is studied by means of ellipsometry and optical second harmonic generation (SHG). Strong optical birefringence is observed using spectroscopic ellipsometry. The nonlinear optical susceptibility extracted from SHG polarimetry reveals that the tensor components are of the same magnitude as in isostructural insulator LiNbO3, except the component along the polar axis d33, which is suppressed by an order of magnitude. Temperature-dependent SHG measurements in combination with Raman spectroscopy indicate a continuous order-disorder type polar phase transition at 140 K. Linear and nonlinear optical microscopy techniques reveal 109 deg/71 deg ferroelastic domain walls, like in other trigonal ferroelectrics. No 180 deg polar domain walls are observed to emerge across the phase transition.

cond-mat.mtrl-sci↗

arXiv2018

Artificial two-dimensional polar metal at room temperature

Polar metals, commonly defined by the coexistence of polar crystal structure and metallicity, are thought to be scarce because the long-range electrostatic fields favoring the polar structure are expected to be fully screened by the conduction electrons of a metal. Moreover, reducing from three to two dimensions, it remains an open question whether a polar metal can exist. Here we report on the realization of a room temperature two-dimensional polar metal of the B-site type in tri-color (tri-layer) superlattices BaTiO$_3$/SrTiO$_3$/LaTiO$_3$. A combination of atomic resolution scanning transmission electron microscopy with electron energy loss spectroscopy, optical second harmonic generation, electrical transport, and first-principles calculations have revealed the microscopic mechanisms of periodic electric polarization, charge distribution, and orbital symmetry. Our results provide a route to creating all-oxide artificial non-centrosymmetric quasi-two-dimensional metals with exotic quantum states including coexisting ferroelectric, ferromagnetic, and superconducting phases.

cond-mat.mtrl-sci↗

arXiv2014

Does the Dirac Cone Exist in Silicene on Metal Substrates?

Absence of the Dirac cone due to a strong band hybridization is revealed to be a common feature for epitaxial silicene on metal substrates according to our first-principles calculations for silicene on Ir, Cu, Mg, Au, Pt, Al, and Ag substrates. The destroyed Dirac cone of silicene, however, can be effectively restored with linear or parabolic dispersion by intercalating alkali metal atoms between silicene and the metal substrates, offering an opportunity to study the intriguing properties of silicene without further transfer of silicene from the metal substrates.

cond-mat.mtrl-sci↗

arXiv2013

Tunable band gap in germanene by surface adsorption

Opening a sizable band gap in the zero-gap germanene without heavy loss of carrier mobility is a key issue for its application in nanoelectronic devices such as high-performance field effect transistors (FETs) operating at room temperature. Using the first-principles calculations, we find a band gap is opened at the Dirac point in germanene by single-side adsorption of alkali metal (AM) atoms. This band gap is tunable by varying the coverage and the species of AM atoms, ranging from 0.02 to 0.31 eV, and the maximum global band gap is 0.26 eV. Since the effective masses of electrons and holes in germanene near the Dirac point after surface adsorption (ranging from 0.005 to 0.106 me) are small, the carrier mobility is expected not to degrade much. Therefore germanene is a potential candidate of effective FET channel operating at room temperature upon surface adsorption.

cond-mat.mes-hall↗

arXiv2013

Strong Band Hybridization between Silicene and Ag(111)Substrate

By using first-principles calculations, we systematically investigated several observed phases of silicene on Ag(111) substrates and their electronic structures. We find that the original Dirac cone of silicene is about 1.5-1.7 eV deeply below the Fermi level and severely destroyed by the band hybridization between silicene and Ag in all the examined phases. Thus, silicene synthesized on Ag(111) substrates could not preserve its excellent electronic property and new method is needed to develop in synthesizing silicene with its Dirac cone surviving.

cond-mat.mes-hall↗