arXiv subjects

Yan Hu

Publications and source records attributed to Yan Hu.

At least 37 records · Page 2Linked to original sources

arXiv2025

BlueLM-2.5-3B Technical Report

We present BlueLM-2.5-3B, a compact and unified dense Multimodal Large Language Model (MLLM) designed for efficient edge-device deployment, offering strong general-purpose and reasoning capabilities. To the best of our knowledge, this is the first 3B-scale MLLM to support both thinking and non-thinking modes, while also enabling explicit control over thinking token budget. BlueLM-2.5-3B is developed through diversified data curation, key data resampling, hybrid heterogeneous reinforcement learning, and a high-performance training infrastructure. Our model achieves superior multimodal capacity while preserving competitive pure-text performance with only 2.9 billion parameters. We conduct comprehensive evaluations across a broad range of multimodal and text-only benchmarks. In thinking mode, BlueLM-2.5-3B achieves comparable performance to Qwen3-4B on text-only benchmarks, and trails the larger Kimi-VL-A3B-16B by only about 5% on average across multimodal evaluations. In non-thinking mode, it outperforms Qwen2.5-VL-3B on the majority of multimodal benchmarks. Additionally, BlueLM-2.5-3B exhibits exceptional data efficiency. All of the aforementioned performance is achieved with substantially less total training data than Qwen2.5-VL-3B and Qwen3-4B. We hope our work contributes to the advancement of high-performance, on-device MLLMs and provides meaningful insights to the research community.

cs.AI↗

arXiv2025

Deformed Aeppli cohomology: canonical deformations and jumping formulas

Given a complex analytic family of complex manifolds, we consider canonical Aeppli deformations of $(p,q)$-forms and study its relations to the varying of dimension of the deformed Aeppli cohomology $\dim H^{\bullet,\bullet}_{Aϕ(t)}(X)$. In particular, we prove the jumping formula for the deformed Aeppli cohomology $H^{\bullet,\bullet}_{Aϕ(t)}(X)$. As a direct consequence, $\dim H^{p,q}_{Aϕ(t)}(X)$ remains constant iff the Bott-Chern deformations of $(n-p,n-q)$-forms and the Aeppli deformations of $(n-p-1,n-q-1)$-forms are canonically unobstructed. Furthermore, the Bott-Chern/Aeppli deformations are shown to be unobstructed if some weak forms of $\partial\bar{\partial}$-lemma is satisfied.

math.DG↗

arXiv2025

Towards Understanding Fine-Tuning Mechanisms of LLMs via Circuit Analysis

Fine-tuning significantly improves the performance of Large Language Models (LLMs), yet its underlying mechanisms remain poorly understood. This paper aims to provide an in-depth interpretation of the fine-tuning process through circuit analysis, a popular tool in Mechanistic Interpretability (MI). Unlike previous studies (Prakash et al. 2024; Chhabra et al. 2024) that focus on tasks where pre-trained models already perform well, we develop a set of mathematical tasks where fine-tuning yields substantial performance gains, which are closer to the practical setting. In our experiments, we identify circuits at various checkpoints during fine-tuning and examine the interplay between circuit analysis, fine-tuning methods, and task complexities. First, we find that while circuits maintain high node similarity before and after fine-tuning, their edges undergo significant changes, in contrast to prior work that shows circuits only add some additional components after fine-tuning. Based on these observations, we develop a circuit-aware Low-Rank Adaptation (LoRA) method, which assigns ranks to layers based on edge changes in the circuits. Experimental results demonstrate that our circuit-based LoRA algorithm achieves an average performance improvement of 2.46% over standard LoRA with similar parameter sizes. Furthermore, we explore how combining circuits from subtasks can enhance fine-tuning in compositional tasks, providing new insights into the design of such tasks and deepening the understanding of circuit dynamics and fine-tuning mechanisms.

cs.CL↗

arXiv2025

Federated Linear Dueling Bandits

Contextual linear dueling bandits have recently garnered significant attention due to their widespread applications in important domains such as recommender systems and large language models. Classical dueling bandit algorithms are typically only applicable to a single agent. However, many applications of dueling bandits involve multiple agents who wish to collaborate for improved performance yet are unwilling to share their data. This motivates us to draw inspirations from federated learning, which involves multiple agents aiming to collaboratively train their neural networks via gradient descent (GD) without sharing their raw data. Previous works have developed federated linear bandit algorithms which rely on closed-form updates of the bandit parameters (e.g., the linear function parameters) to achieve collaboration. However, in linear dueling bandits, the linear function parameters lack a closed-form expression and their estimation requires minimizing a loss function. This renders these previous methods inapplicable. In this work, we overcome this challenge through an innovative and principled combination of online gradient descent (OGD, for minimizing the loss function to estimate the linear function parameters) and federated learning, hence introducing our federated linear dueling bandit with OGD (FLDB-OGD) algorithm. Through rigorous theoretical analysis, we prove that FLDB-OGD enjoys a sub-linear upper bound on its cumulative regret and demonstrate a theoretical trade-off between regret and communication complexity. We conduct empirical experiments to demonstrate the effectiveness of FLDB-OGD and reveal valuable insights, such as the benefit of a larger number of agents, the regret-communication trade-off, among others.

cs.LG↗

arXiv2025

RADAR: Enhancing Radiology Report Generation with Supplementary Knowledge Injection

Large language models (LLMs) have demonstrated remarkable capabilities in various domains, including radiology report generation. Previous approaches have attempted to utilize multimodal LLMs for this task, enhancing their performance through the integration of domain-specific knowledge retrieval. However, these approaches often overlook the knowledge already embedded within the LLMs, leading to redundant information integration. To address this limitation, we propose Radar, a framework for enhancing radiology report generation with supplementary knowledge injection. Radar improves report generation by systematically leveraging both the internal knowledge of an LLM and externally retrieved information. Specifically, it first extracts the model's acquired knowledge that aligns with expert image-based classification outputs. It then retrieves relevant supplementary knowledge to further enrich this information. Finally, by aggregating both sources, Radar generates more accurate and informative radiology reports. Extensive experiments on MIMIC-CXR, CheXpert-Plus, and IU X-ray demonstrate that our model outperforms state-of-the-art LLMs in both language quality and clinical accuracy.

cs.CV↗

arXiv2025

Model Unlearning via Sparse Autoencoder Subspace Guided Projections

Large language models (LLMs) store vast amounts of information, making them powerful yet raising privacy and safety concerns when selective knowledge removal is required. Existing unlearning strategies, ranging from gradient-based fine-tuning and model editing to sparse autoencoder (SAE) steering, either lack interpretability or fail to provide a robust defense against adversarial prompts. We propose SAE-Guided Subspace Projection Unlearning (SSPU), a novel framework that leverages SAE features to drive targeted updates in the model's parameter space, enabling precise, interpretable, and robust unlearning. SSPU's three-stage pipeline performs data-driven layer and feature selection, subspace construction via QR decomposition, and constrained optimization that controls activations into an "irrelevant" subspace while preserving retained knowledge. Overall, we use SAE features to construct a subspace that supervises unlearning, refining the loss and adding a regularization term to guide interpretable parameter updates. In experiments on the WMDP-Cyber forget set and three utility benchmarks (MMLU, TruthfulQA, GSM8K), SSPU reduces harmful knowledge accuracy by 3.22% compared to the strongest baseline. It also improves adversarial robustness, lowering malicious accuracy under jailbreak prompts compared to baselines. Our findings expose the limitations of prior unlearning methods and demonstrate how interpretable subspace-guided optimization can achieve robust, controllable model behavior.

cs.CL↗

arXiv2025

Benchmarking large language models for biomedical natural language processing applications and recommendations

The rapid growth of biomedical literature poses challenges for manual knowledge curation and synthesis. Biomedical Natural Language Processing (BioNLP) automates the process. While Large Language Models (LLMs) have shown promise in general domains, their effectiveness in BioNLP tasks remains unclear due to limited benchmarks and practical guidelines. We perform a systematic evaluation of four LLMs, GPT and LLaMA representatives on 12 BioNLP benchmarks across six applications. We compare their zero-shot, few-shot, and fine-tuning performance with traditional fine-tuning of BERT or BART models. We examine inconsistencies, missing information, hallucinations, and perform cost analysis. Here we show that traditional fine-tuning outperforms zero or few shot LLMs in most tasks. However, closed-source LLMs like GPT-4 excel in reasoning-related tasks such as medical question answering. Open source LLMs still require fine-tuning to close performance gaps. We find issues like missing information and hallucinations in LLM outputs. These results offer practical insights for applying LLMs in BioNLP.

cs.CL↗

arXiv2025

Open-Medical-R1: How to Choose Data for RLVR Training at Medicine Domain

This paper explores optimal data selection strategies for Reinforcement Learning with Verified Rewards (RLVR) training in the medical domain. While RLVR has shown exceptional potential for enhancing reasoning capabilities in large language models, most prior implementations have focused on mathematics and logical puzzles, with limited exploration of domain-specific applications like medicine. We investigate four distinct data sampling strategies from MedQA-USMLE: random sampling (baseline), and filtering using Phi-4, Gemma-3-27b-it, and Gemma-3-12b-it models. Using Gemma-3-12b-it as our base model and implementing Group Relative Policy Optimization (GRPO), we evaluate performance across multiple benchmarks including MMLU, GSM8K, MMLU-Pro, and CMMLU. Our findings demonstrate that models trained on filtered data generally outperform those trained on randomly selected samples. Notably, training on self-filtered samples (using Gemma-3-12b-it for filtering) achieved superior performance in medical domains but showed reduced robustness across different benchmarks, while filtering with larger models from the same series yielded better overall robustness. These results provide valuable insights into effective data organization strategies for RLVR in specialized domains and highlight the importance of thoughtful data selection in achieving optimal performance. You can access our repository (https://github.com/Qsingle/open-medical-r1) to get the codes.

cs.LG↗

arXiv2025

Adaptive Wavelet Filters as Practical Texture Feature Amplifiers for Parkinson's Disease Screening in OCT

Parkinson's disease (PD) is a prevalent neurodegenerative disorder globally. The eye's retina is an extension of the brain and has great potential in PD screening. Recent studies have suggested that texture features extracted from retinal layers can be adopted as biomarkers for PD diagnosis under optical coherence tomography (OCT) images. Frequency domain learning techniques can enhance the feature representations of deep neural networks (DNNs) by decomposing frequency components involving rich texture features. Additionally, previous works have not exploited texture features for automated PD screening in OCT. Motivated by the above analysis, we propose a novel Adaptive Wavelet Filter (AWF) that serves as the Practical Texture Feature Amplifier to fully leverage the merits of texture features to boost the PD screening performance of DNNs with the aid of frequency domain learning. Specifically, AWF first enhances texture feature representation diversities via channel mixer, then emphasizes informative texture feature representations with the well-designed adaptive wavelet filtering token mixer. By combining the AWFs with the DNN stem, AWFNet is constructed for automated PD screening. Additionally, we introduce a novel Balanced Confidence (BC) Loss by mining the potential of sample-wise predicted probabilities of all classes and class frequency prior, to further boost the PD screening performance and trustworthiness of AWFNet. The extensive experiments manifest the superiority of our AWFNet and BC over state-of-the-art methods in terms of PD screening performance and trustworthiness.

eess.IV↗

arXiv2025

Generalizable and Explainable Deep Learning for Medical Image Computing: An Overview

Objective. This paper presents an overview of generalizable and explainable artificial intelligence (XAI) in deep learning (DL) for medical imaging, aimed at addressing the urgent need for transparency and explainability in clinical applications. Methodology. We propose to use four CNNs in three medical datasets (brain tumor, skin cancer, and chest x-ray) for medical image classification tasks. In addition, we perform paired t-tests to show the significance of the differences observed between different methods. Furthermore, we propose to combine ResNet50 with five common XAI techniques to obtain explainable results for model prediction, aiming at improving model transparency. We also involve a quantitative metric (confidence increase) to evaluate the usefulness of XAI techniques. Key findings. The experimental results indicate that ResNet50 can achieve feasible accuracy and F1 score in all datasets (e.g., 86.31\% accuracy in skin cancer). Furthermore, the findings show that while certain XAI methods, such as XgradCAM, effectively highlight relevant abnormal regions in medical images, others, like EigenGradCAM, may perform less effectively in specific scenarios. In addition, XgradCAM indicates higher confidence increase (e.g., 0.12 in glioma tumor) compared to GradCAM++ (0.09) and LayerCAM (0.08). Implications. Based on the experimental results and recent advancements, we outline future research directions to enhance the robustness and generalizability of DL models in the field of biomedical imaging.

cs.CV↗

arXiv2025

SHAP-Integrated Convolutional Diagnostic Networks for Feature-Selective Medical Analysis

This study introduces the SHAP-integrated convolutional diagnostic network (SICDN), an interpretable feature selection method designed for limited datasets, to address the challenge posed by data privacy regulations that restrict access to medical datasets. The SICDN model was tested on classification tasks using pneumonia and breast cancer datasets, demonstrating over 97% accuracy and surpassing four popular CNN models. We also integrated a historical weighted moving average technique to enhance feature selection. The SICDN shows potential in medical image prediction, with the code available on https://github.com/AIPMLab/SICDN.

eess.IV↗

arXiv2025

Hierarchical Context Transformer for Multi-level Semantic Scene Understanding

A comprehensive and explicit understanding of surgical scenes plays a vital role in developing context-aware computer-assisted systems in the operating theatre. However, few works provide systematical analysis to enable hierarchical surgical scene understanding. In this work, we propose to represent the tasks set [phase recognition --> step recognition --> action and instrument detection] as multi-level semantic scene understanding (MSSU). For this target, we propose a novel hierarchical context transformer (HCT) network and thoroughly explore the relations across the different level tasks. Specifically, a hierarchical relation aggregation module (HRAM) is designed to concurrently relate entries inside multi-level interaction information and then augment task-specific features. To further boost the representation learning of the different tasks, inter-task contrastive learning (ICL) is presented to guide the model to learn task-wise features via absorbing complementary information from other tasks. Furthermore, considering the computational costs of the transformer, we propose HCT+ to integrate the spatial and temporal adapter to access competitive performance on substantially fewer tunable parameters. Extensive experiments on our cataract dataset and a publicly available endoscopic PSI-AVA dataset demonstrate the outstanding performance of our method, consistently exceeding the state-of-the-art methods by a large margin. The code is available at https://github.com/Aurora-hao/HCT.

cs.CV↗

arXiv2025

Exploring Large Language Models in Healthcare: Insights into Corpora Sources, Customization Strategies, and Evaluation Metrics

This study reviewed the use of Large Language Models (LLMs) in healthcare, focusing on their training corpora, customization techniques, and evaluation metrics. A systematic search of studies from 2021 to 2024 identified 61 articles. Four types of corpora were used: clinical resources, literature, open-source datasets, and web-crawled data. Common construction techniques included pre-training, prompt engineering, and retrieval-augmented generation, with 44 studies combining multiple methods. Evaluation metrics were categorized into process, usability, and outcome metrics, with outcome metrics divided into model-based and expert-assessed outcomes. The study identified critical gaps in corpus fairness, which contributed to biases from geographic, cultural, and socio-economic factors. The reliance on unverified or unstructured data highlighted the need for better integration of evidence-based clinical guidelines. Future research should focus on developing a tiered corpus architecture with vetted sources and dynamic weighting, while ensuring model transparency. Additionally, the lack of standardized evaluation frameworks for domain-specific models called for comprehensive validation of LLMs in real-world healthcare settings.

cs.CL↗

arXiv2025

LLMs for Mathematical Modeling: Towards Bridging the Gap between Natural and Mathematical Languages

Large Language Models (LLMs) have demonstrated strong performance across various natural language processing tasks, yet their proficiency in mathematical reasoning remains a key challenge. Addressing the gap between natural and mathematical language requires advanced reasoning capabilities, approaching those of Artificial General Intelligence (AGI). However, the evaluation remains challenging, as perfectly representing reality is inherently elusive, and traditional methods like manual or direct comparison of mathematical statements (Ramamonjison et al., 2023) are insufficient for assessing true modeling ability. We propose a process-oriented framework to evaluate LLMs' ability to construct mathematical models, using solvers to compare outputs with ground truth. Introducing Mamo, a benchmark with 1,209 questions covering ordinary differential equations, linear programming, and mixed-integer linear programming, we enable automatic evaluation of modeling accuracy. The results show that existing LLMs struggle with complex mathematical modeling tasks, with larger models demonstrating superior performance, while open-source models remain competitive in simpler cases but still fall short of proprietary models in more challenging problems.

cs.AI↗

arXiv2025

UCFE: A User-Centric Financial Expertise Benchmark for Large Language Models

This paper introduces the UCFE: User-Centric Financial Expertise benchmark, an innovative framework designed to evaluate the ability of large language models (LLMs) to handle complex real-world financial tasks. UCFE benchmark adopts a hybrid approach that combines human expert evaluations with dynamic, task-specific interactions to simulate the complexities of evolving financial scenarios. Firstly, we conducted a user study involving 804 participants, collecting their feedback on financial tasks. Secondly, based on this feedback, we created our dataset that encompasses a wide range of user intents and interactions. This dataset serves as the foundation for benchmarking 11 LLMs services using the LLM-as-Judge methodology. Our results show a significant alignment between benchmark scores and human preferences, with a Pearson correlation coefficient of 0.78, confirming the effectiveness of the UCFE dataset and our evaluation approach. UCFE benchmark not only reveals the potential of LLMs in the financial domain but also provides a robust framework for assessing their performance and user satisfaction.

q-fin.CP↗

arXiv2025

Information Extraction from Clinical Notes: Are We Ready to Switch to Large Language Models?

Backgrounds: Information extraction (IE) is critical in clinical natural language processing (NLP). While large language models (LLMs) excel on generative tasks, their performance on extractive tasks remains debated. Methods: We investigated Named Entity Recognition (NER) and Relation Extraction (RE) using 1,588 clinical notes from four sources (UT Physicians, MTSamples, MIMIC-III, and i2b2). We developed an annotated corpus covering 4 clinical entities and 16 modifiers, and compared instruction-tuned LLaMA-2 and LLaMA-3 against BERT in terms of performance, generalizability, computational resources, and throughput to BERT. Results: LLaMA models outperformed BERT across datasets. With sufficient training data, LLaMA showed modest improvements (1% on NER, 1.5-3.7% on RE); improvements were larger with limited training data. On unseen i2b2 data, LLaMA-3-70B outperformed BERT by 7% (F1) on NER and 4% on RE. However, LLaMA models required more computing resources and ran up to 28 times slower. We implemented "Kiwi," a clinical IE package featuring both models, available at https://kiwi.clinicalnlp.org/. Conclusion: This study is among the first to develop and evaluate a comprehensive clinical IE system using open-source LLMs. Results indicate that LLaMA models outperform BERT for clinical NER and RE but with higher computational costs and lower throughputs. These findings highlight that choosing between LLMs and traditional deep learning methods for clinical IE applications should remain task-specific, taking into account both performance metrics and practical considerations such as available computing resources and the intended use case scenarios.

cs.CL↗

arXiv2025

COph100: A comprehensive fundus image registration dataset from infants constituting the "RIDIRP" database

Retinal image registration is vital for diagnostic therapeutic applications within the field of ophthalmology. Existing public datasets, focusing on adult retinal pathologies with high-quality images, have limited number of image pairs and neglect clinical challenges. To address this gap, we introduce COph100, a novel and challenging dataset known as the Comprehensive Ophthalmology Retinal Image Registration dataset for infants with a wide range of image quality issues constituting the public "RIDIRP" database. COph100 consists of 100 eyes, each with 2 to 9 examination sessions, amounting to a total of 491 image pairs carefully selected from the publicly available dataset. We manually labeled the corresponding ground truth image points and provided automatic vessel segmentation masks for each image. We have assessed COph100 in terms of image quality and registration outcomes using state-of-the-art algorithms. This resource enables a robust comparison of retinal registration methodologies and aids in the analysis of disease progression in infants, thereby deepening our understanding of pediatric ophthalmic conditions.

cs.CV↗

arXiv2024

BlenderLLM: Training Large Language Models for Computer-Aided Design with Self-improvement

The application of Large Language Models (LLMs) in Computer-Aided Design (CAD) remains an underexplored area, despite their remarkable advancements in other domains. In this paper, we present BlenderLLM, a novel framework for training LLMs specifically for CAD tasks leveraging a self-improvement methodology. To support this, we developed a bespoke training dataset, BlendNet, and introduced a comprehensive evaluation suite, CADBench. Our results reveal that existing models demonstrate significant limitations in generating accurate CAD scripts. However, through minimal instruction-based fine-tuning and iterative self-improvement, BlenderLLM significantly surpasses these models in both functionality and accuracy of CAD script generation. This research establishes a strong foundation for the application of LLMs in CAD while demonstrating the transformative potential of self-improving models in advancing CAD automation. We encourage further exploration and adoption of these methodologies to drive innovation in the field. The dataset, model, benchmark, and source code are publicly available at https://github.com/FreedomIntelligence/BlenderLLM

cs.HC↗