arXiv subjects

Yang Song

Publications and source records attributed to Yang Song.

At least 109 records · Page 6Linked to original sources

arXiv2025

Spatially Gene Expression Prediction using Dual-Scale Contrastive Learning

Spatial transcriptomics (ST) provides crucial insights into tissue micro-environments, but is limited to its high cost and complexity. As an alternative, predicting gene expression from pathology whole slide images (WSI) is gaining increasing attention. However, existing methods typically rely on single patches or a single pathology modality, neglecting the complex spatial and molecular interactions between target and neighboring information (e.g., gene co-expression). This leads to a failure in establishing connections among adjacent regions and capturing intricate cross-modal relationships. To address these issues, we propose NH2ST, a framework that integrates spatial context and both pathology and gene modalities for gene expression prediction. Our model comprises a query branch and a neighbor branch to process paired target patch and gene data and their neighboring regions, where cross-attention and contrastive learning are employed to capture intrinsic associations and ensure alignments between pathology and gene expression. Extensive experiments on six datasets demonstrate that our model consistently outperforms existing methods, achieving over 20% in PCC metrics. Codes are available at https://github.com/MCPathology/NH2ST

cs.CV↗

arXiv2025

MockLLM: A Multi-Agent Behavior Collaboration Framework for Online Job Seeking and Recruiting

Online recruitment platforms have reshaped job-seeking and recruiting processes, driving increased demand for applications that enhance person-job matching. Traditional methods generally rely on analyzing textual data from resumes and job descriptions, limiting the dynamic, interactive aspects crucial to effective recruitment. Recent advances in Large Language Models (LLMs) have revealed remarkable potential in simulating adaptive, role-based dialogues, making them well-suited for recruitment scenarios. In this paper, we propose \textbf{MockLLM}, a novel framework to generate and evaluate mock interview interactions. The system consists of two key components: mock interview generation and two-sided evaluation in handshake protocol. By simulating both interviewer and candidate roles, MockLLM enables consistent and collaborative interactions for real-time and two-sided matching. To further improve the matching quality, MockLLM further incorporates reflection memory generation and dynamic strategy modification, refining behaviors based on previous experience. We evaluate MockLLM on real-world data Boss Zhipin, a major Chinese recruitment platform. The experimental results indicate that MockLLM outperforms existing methods in matching accuracy, scalability, and adaptability across job domains, highlighting its potential to advance candidate assessment and online recruitment.

cs.CL↗

arXiv2025

Memory-Augmented Incomplete Multimodal Survival Prediction via Cross-Slide and Gene-Attentive Hypergraph Learning

Multimodal pathology-genomic analysis is critical for cancer survival prediction. However, existing approaches predominantly integrate formalin-fixed paraffin-embedded (FFPE) slides with genomic data, while neglecting the availability of other preservation slides, such as Fresh Froze (FF) slides. Moreover, as the high-resolution spatial nature of pathology data tends to dominate the cross-modality fusion process, it hinders effective multimodal fusion and leads to modality imbalance challenges between pathology and genomics. These methods also typically require complete data modalities, limiting their clinical applicability with incomplete modalities, such as missing either pathology or genomic data. In this paper, we propose a multimodal survival prediction framework that leverages hypergraph learning to effectively integrate multi-WSI information and cross-modality interactions between pathology slides and genomics data while addressing modality imbalance. In addition, we introduce a memory mechanism that stores previously learned paired pathology-genomic features and dynamically compensates for incomplete modalities. Experiments on five TCGA datasets demonstrate that our model outperforms advanced methods by over 2.3% in C-Index. Under incomplete modality scenarios, our approach surpasses pathology-only (3.3%) and gene-only models (7.9%). Code: https://github.com/MCPathology/M2Surv

cs.CV↗

arXiv2025

BiCo-Fusion: Bidirectional Complementary LiDAR-Camera Fusion for Semantic- and Spatial-Aware 3D Object Detection

3D object detection is an important task that has been widely applied in autonomous driving. To perform this task, a new trend is to fuse multi-modal inputs, i.e., LiDAR and camera. Under such a trend, recent methods fuse these two modalities by unifying them in the same 3D space. However, during direct fusion in a unified space, the drawbacks of both modalities (LiDAR features struggle with detailed semantic information and the camera lacks accurate 3D spatial information) are also preserved, diluting semantic and spatial awareness of the final unified representation. To address the issue, this letter proposes a novel bidirectional complementary LiDAR-camera fusion framework, called BiCo-Fusion that can achieve robust semantic- and spatial-aware 3D object detection. The key insight is to fuse LiDAR and camera features in a bidirectional complementary way to enhance the semantic awareness of the LiDAR and the 3D spatial awareness of the camera. The enhanced features from both modalities are then adaptively fused to build a semantic- and spatial-aware unified representation. Specifically, we introduce Pre-Fusion consisting of a Voxel Enhancement Module (VEM) to enhance the semantic awareness of voxel features from 2D camera features and Image Enhancement Module (IEM) to enhance the 3D spatial awareness of camera features from 3D voxel features. We then introduce Unified Fusion (U-Fusion) to adaptively fuse the enhanced features from the last stage to build a unified representation. Extensive experiments demonstrate the superiority of our BiCo-Fusion against the prior arts. Project page: https://t-ys.github.io/BiCo-Fusion/.

cs.CV↗

arXiv2025

STeP: A Framework for Solving Scientific Video Inverse Problems with Spatiotemporal Diffusion Priors

Reconstructing spatially and temporally coherent videos from time-varying measurements is a fundamental challenge in many scientific domains. A major difficulty arises from the sparsity of measurements, which hinders accurate recovery of temporal dynamics. Existing image diffusion-based methods rely on extracting temporal consistency directly from measurements, limiting their effectiveness on scientific tasks with high spatiotemporal uncertainty. We address this difficulty by proposing a plug-and-play framework that incorporates a learned spatiotemporal diffusion prior. Due to its plug-and-play nature, our framework can be flexibly applied to different video inverse problems without the need for task-specific design and temporal heuristics. We further demonstrate that a spatiotemporal diffusion model can be trained efficiently with limited video data. We validate our approach on two challenging scientific video reconstruction tasks: black hole video reconstruction and dynamic MRI. While baseline methods struggle to provide temporally coherent reconstructions, our approach achieves significantly improved recovery of the spatiotemporal structure of the underlying ground truth videos.

cs.CV↗

arXiv2025

Hypergraph Tversky-Aware Domain Incremental Learning for Brain Tumor Segmentation with Missing Modalities

Existing methods for multimodal MRI segmentation with missing modalities typically assume that all MRI modalities are available during training. However, in clinical practice, some modalities may be missing due to the sequential nature of MRI acquisition, leading to performance degradation. Furthermore, retraining models to accommodate newly available modalities can be inefficient and may cause overfitting, potentially compromising previously learned knowledge. To address these challenges, we propose Replay-based Hypergraph Domain Incremental Learning (ReHyDIL) for brain tumor segmentation with missing modalities. ReHyDIL leverages Domain Incremental Learning (DIL) to enable the segmentation model to learn from newly acquired MRI modalities without forgetting previously learned information. To enhance segmentation performance across diverse patient scenarios, we introduce the Cross-Patient Hypergraph Segmentation Network (CHSNet), which utilizes hypergraphs to capture high-order associations between patients. Additionally, we incorporate Tversky-Aware Contrastive (TAC) loss to effectively mitigate information imbalance both across and within different modalities. Extensive experiments on the BraTS2019 dataset demonstrate that ReHyDIL outperforms state-of-the-art methods, achieving an improvement of over 2% in the Dice Similarity Coefficient across various tumor regions. Our code is available at https://github.com/reeive/ReHyDIL.

cs.CV↗

arXiv2025

Multimodal Cancer Survival Analysis via Hypergraph Learning with Cross-Modality Rebalance

Multimodal pathology-genomic analysis has become increasingly prominent in cancer survival prediction. However, existing studies mainly utilize multi-instance learning to aggregate patch-level features, neglecting the information loss of contextual and hierarchical details within pathology images. Furthermore, the disparity in data granularity and dimensionality between pathology and genomics leads to a significant modality imbalance. The high spatial resolution inherent in pathology data renders it a dominant role while overshadowing genomics in multimodal integration. In this paper, we propose a multimodal survival prediction framework that incorporates hypergraph learning to effectively capture both contextual and hierarchical details from pathology images. Moreover, it employs a modality rebalance mechanism and an interactive alignment fusion strategy to dynamically reweight the contributions of the two modalities, thereby mitigating the pathology-genomics imbalance. Quantitative and qualitative experiments are conducted on five TCGA datasets, demonstrating that our model outperforms advanced methods by over 3.4\% in C-Index performance.

cs.CV↗

arXiv2025

Temporal Alignment of Time Sensitive Facts with Activation Engineering

Large Language Models (LLMs) are trained on diverse and often conflicting knowledge spanning multiple domains and time periods. Some of this knowledge is only valid within specific temporal contexts, such as answering the question, "Who is the President of the United States in 2022?" Ensuring LLMs generate time appropriate responses is crucial for maintaining relevance and accuracy. In this work we explore activation engineering as a method for temporally aligning LLMs to improve factual recall without any training or dataset creation. In this research we explore an activation engineering technique to ground three versions of LLaMA 2 to specific points in time and examine the effects of varying injection layers and prompting strategies. Our experiments demonstrate up to a 44% and 16% improvement in relative and explicit prompting respectively, achieving comparable performance to the fine-tuning method proposed by Zhao et al. (2024) . Notably, our approach achieves similar results to the fine-tuning baseline while being significantly more computationally efficient and requiring no pre-aligned datasets.

cs.CL↗

arXiv2025

Analyzing Consumer IoT Traffic from Security and Privacy Perspectives: a Comprehensive Survey

The Consumer Internet of Things (CIoT), a notable segment within the IoT domain, involves the integration of IoT technology into consumer electronics and devices, such as smart homes and smart wearables. Compared to traditional IoT fields, CIoT differs notably in target users, product types, and design approaches. While offering convenience to users, it also raises new security and privacy concerns. Network traffic analysis, a widely used technique in the security community, has been extensively applied to investigate these concerns about CIoT. Compared to traditional network traffic analysis in fields like mobile apps and websites, CIoT introduces unique characteristics that pose new challenges and research opportunities. Researchers have made significant contributions in this area. To aid researchers in understanding the application of traffic analysis tools for assessing CIoT security and privacy risks, this survey reviews 310 publications on traffic analysis within the CIoT security and privacy domain from January 2018 to June 2024, focusing on three research questions. Our work: 1) outlines the CIoT traffic analysis process and highlights its differences from general network traffic analysis. 2) summarizes and classifies existing research into four categories according to its application objectives: device fingerprinting, user activity inference, malicious traffic detection, and measurement. 3) explores emerging challenges and potential future research directions based on each step of the CIoT traffic analysis process. This will provide new insights to the community and guide the industry towards safer product designs.

cs.CR↗

arXiv2025

A Self-organizing Interval Type-2 Fuzzy Neural Network for Multi-Step Time Series Prediction

Data uncertainty is inherent in many real-world applications and poses significant challenges for accurate time series predictions. The interval type 2 fuzzy neural network (IT2FNN) has shown exceptional performance in uncertainty modelling for single-step prediction tasks. However, extending it for multi-step ahead predictions introduces further issues in uncertainty handling as well as model interpretability and accuracy. To address these issues, this paper proposes a new selforganizing interval type-2 fuzzy neural network with multiple outputs (SOIT2FNN-MO). Differing from the traditional six-layer IT2FNN, a nine-layer network architecture is developed. First, a new co-antecedent layer and a modified consequent layer are devised to improve the interpretability of the fuzzy model for multi-step time series prediction problems. Second, a new link layer is created to improve the accuracy by building temporal connections between multi-step predictions. Third, a new transformation layer is designed to address the problem of the vanishing rule strength caused by high-dimensional inputs. Furthermore, a two-stage, self-organizing learning mechanism is developed to automatically extract fuzzy rules from data and optimize network parameters. Experimental results on chaotic and microgrid prediction problems demonstrate that SOIT2FNN-MO outperforms state-of-the-art methods, by achieving a better accuracy ranging from 1.6% to 30% depending on the level of noises in data. Additionally, the proposed model is more interpretable, offering deeper insights into the prediction process.

cs.LG↗

arXiv2025

Bearing-Only Tracking and Circumnavigation of a Fast Time-Varied Velocity Target Utilising an LSTM

Bearing-only tracking, localisation, and circumnavigation is a problem in which a single or a group of agents attempts to track a target while circumnavigating it at a fixed distance using only bearing measurements. While previous studies have addressed scenarios involving stationary targets or those moving with an unknown constant velocity, the challenge of accurately tracking a target moving with a time-varying velocity remains open. This paper presents an approach utilising a Long Short-Term Memory (LSTM) based estimator for predicting the target's position and velocity. We also introduce a corresponding control strategy. When evaluated against previously proposed estimation and circumnavigation approaches, our approach demonstrates significantly lower control and estimation errors across various time-varying velocity scenarios. Additionally, we illustrate the effectiveness of the proposed method in tracking targets with a double integrator nonholonomic system dynamics that mimic real-world systems.

cs.RO↗

arXiv2025

Unified Generative Search and Recommendation

Modern commercial platforms typically offer both search and recommendation functionalities to serve diverse user needs, making joint modeling of these tasks an appealing direction. While prior work has shown that integrating search and recommendation can be mutually beneficial, it also reveals a performance trade-off: enhancements in one task often come at the expense of the other. This challenge arises from their distinct information requirements: search emphasizes semantic relevance between queries and items, whereas recommendation depends more on collaborative signals among users and items. Effectively addressing this trade-off requires tackling two key problems: (1) integrating both semantic and collaborative signals into item representations, and (2) guiding the model to distinguish and adapt to the unique demands of search and recommendation. The emergence of generative retrieval with Large Language Models (LLMs) presents new possibilities. This paradigm encodes items as identifiers and frames both search and recommendation as sequential generation tasks, offering the flexibility to leverage multiple identifiers and task-specific prompts. In light of this, we introduce GenSAR, a unified generative framework for balanced search and recommendation. Our approach designs dual-purpose identifiers and tailored training strategies to incorporate complementary signals and align with task-specific objectives. Experiments on both public and commercial datasets demonstrate that GenSAR effectively reduces the trade-off and achieves state-of-the-art performance on both tasks.

cs.IR↗

arXiv2025

Retrieval Augmented Generation with Collaborative Filtering for Personalized Text Generation

Recently, the personalization of Large Language Models (LLMs) to generate content that aligns with individual user preferences has garnered widespread attention. Personalized Retrieval-Augmented Generation (RAG), which retrieves relevant documents from the user's history to reflect their preferences and enhance LLM generation, is one commonly used approach for personalization. However, existing personalized RAG methods do not consider that the histories of similar users can also assist in personalized generation for the current user, meaning that collaborative information between users can also benefit personalized generation. Inspired by the application of collaborative filtering in recommender systems, we propose a method called CFRAG, which adapts Collaborative Filtering to RAG for personalized text generation. However, this presents two challenges: (1)~how to incorporate collaborative information without explicit user similarity labels? (2)~how to retrieve documents that support personalized LLM generation? For Challenge 1, we use contrastive learning to train user embeddings to retrieve similar users and introduce collaborative information. For Challenge 2, we design a personalized retriever and reranker to retrieve the top-$k$ documents from these users' histories. We take into account the user's preference during retrieval and reranking. Then we leverage feedback from the LLM to fine-tune the personalized retriever and reranker, enabling them to retrieve documents that meet the personalized generation needs of the LLM. Experimental results on the Language Model Personalization (LaMP) benchmark validate the effectiveness of CFRAG. Further analysis confirms the importance of incorporating collaborative information.

cs.IR↗

arXiv2025

QE-RAG: A Robust Retrieval-Augmented Generation Benchmark for Query Entry Errors

Retriever-augmented generation (RAG) has become a widely adopted approach for enhancing the factual accuracy of large language models (LLMs). While current benchmarks evaluate the performance of RAG methods from various perspectives, they share a common assumption that user queries used for retrieval are error-free. However, in real-world interactions between users and LLMs, query entry errors such as keyboard proximity errors, visual similarity errors, and spelling errors are frequent. The impact of these errors on current RAG methods against such errors remains largely unexplored. To bridge this gap, we propose QE-RAG, the first robust RAG benchmark designed specifically to evaluate performance against query entry errors. We augment six widely used datasets by injecting three common types of query entry errors into randomly selected user queries at rates of 20\% and 40\%, simulating typical user behavior in real-world scenarios. We analyze the impact of these errors on LLM outputs and find that corrupted queries degrade model performance, which can be mitigated through query correction and training a robust retriever for retrieving relevant documents. Based on these insights, we propose a contrastive learning-based robust retriever training method and a retrieval-augmented query correction method. Extensive in-domain and cross-domain experiments reveal that: (1) state-of-the-art RAG methods including sequential, branching, and iterative methods, exhibit poor robustness to query entry errors; (2) our method significantly enhances the robustness of RAG when handling query entry errors and it's compatible with existing RAG methods, further improving their robustness.

cs.IR↗

arXiv2025

Vision-based Multi-future Trajectory Prediction: A Survey

Vision-based trajectory prediction is an important task that supports safe and intelligent behaviours in autonomous systems. Many advanced approaches have been proposed over the years with improved spatial and temporal feature extraction. However, human behaviour is naturally diverse and uncertain. Given the past trajectory and surrounding environment information, an agent can have multiple plausible trajectories in the future. To tackle this problem, an essential task named multi-future trajectory prediction (MTP) has recently been studied. This task aims to generate a diverse, acceptable and explainable distribution of future predictions for each agent. In this paper, we present the first survey for MTP with our unique taxonomies and a comprehensive analysis of frameworks, datasets and evaluation metrics. We also compare models on existing MTP datasets and conduct experiments on the ForkingPath dataset. Finally, we discuss multiple future directions that can help researchers develop novel multi-future trajectory prediction systems and other diverse learning tasks similar to MTP.

cs.RO↗

arXiv2025

Pyramidal Flow Matching for Efficient Video Generative Modeling

Video generation requires modeling a vast spatiotemporal space, which demands significant computational resources and data usage. To reduce the complexity, the prevailing approaches employ a cascaded architecture to avoid direct training with full resolution latent. Despite reducing computational demands, the separate optimization of each sub-stage hinders knowledge sharing and sacrifices flexibility. This work introduces a unified pyramidal flow matching algorithm. It reinterprets the original denoising trajectory as a series of pyramid stages, where only the final stage operates at the full resolution, thereby enabling more efficient video generative modeling. Through our sophisticated design, the flows of different pyramid stages can be interlinked to maintain continuity. Moreover, we craft autoregressive video generation with a temporal pyramid to compress the full-resolution history. The entire framework can be optimized in an end-to-end manner and with a single unified Diffusion Transformer (DiT). Extensive experiments demonstrate that our method supports generating high-quality 5-second (up to 10-second) videos at 768p resolution and 24 FPS within 20.7k A100 GPU training hours. All code and models are open-sourced at https://pyramid-flow.github.io.

cs.CV↗

arXiv2025

Prototype-Based Image Prompting for Weakly Supervised Histopathological Image Segmentation

Weakly supervised image segmentation with image-level labels has drawn attention due to the high cost of pixel-level annotations. Traditional methods using Class Activation Maps (CAMs) often highlight only the most discriminative regions, leading to incomplete masks. Recent approaches that introduce textual information struggle with histopathological images due to inter-class homogeneity and intra-class heterogeneity. In this paper, we propose a prototype-based image prompting framework for histopathological image segmentation. It constructs an image bank from the training set using clustering, extracting multiple prototype features per class to capture intra-class heterogeneity. By designing a matching loss between input features and class-specific prototypes using contrastive learning, our method addresses inter-class homogeneity and guides the model to generate more accurate CAMs. Experiments on four datasets (LUAD-HistoSeg, BCSS-WSSS, GCSS, and BCSS) show that our method outperforms existing weakly supervised segmentation approaches, setting new benchmarks in histopathological image segmentation.

cs.CV↗

arXiv2025

Interpretable Image Classification via Non-parametric Part Prototype Learning

Classifying images with an interpretable decision-making process is a long-standing problem in computer vision. In recent years, Prototypical Part Networks has gained traction as an approach for self-explainable neural networks, due to their ability to mimic human visual reasoning by providing explanations based on prototypical object parts. However, the quality of the explanations generated by these methods leaves room for improvement, as the prototypes usually focus on repetitive and redundant concepts. Leveraging recent advances in prototype learning, we present a framework for part-based interpretable image classification that learns a set of semantically distinctive object parts for each class, and provides diverse and comprehensive explanations. The core of our method is to learn the part-prototypes in a non-parametric fashion, through clustering deep features extracted from foundation vision models that encode robust semantic information. To quantitatively evaluate the quality of explanations provided by ProtoPNets, we introduce Distinctiveness Score and Comprehensiveness Score. Through evaluation on CUB-200-2011, Stanford Cars and Stanford Dogs datasets, we show that our framework compares favourably against existing ProtoPNets while achieving better interpretability. Code is available at: https://github.com/zijizhu/proto-non-param.

cs.CV↗