arXiv subjects

Yannick A. D. Omar

Publications and source records attributed to Yannick A. D. Omar.

7 recordsLinked to original sources

arXiv2026

Thickness effects in the electromechanical stability of charged biological membranes

Understanding how electric fields destabilize biological membranes is important for electroporation-based technologies and bioelectronic interfaces. However, theoretical descriptions of this phenomenon remain fragmented. Existing theories treat either electrostatics in membranes of finite thickness or electrohydrodynamic flows at idealized zero-thickness interfaces, leaving unresolved a unified description that simultaneously incorporates finite membrane thickness, surface charge, and bulk electrohydrodynamics. Here, we apply a recently-developed, dimension-reduction framework that captures the coupled electrohydrodynamic and mechanical effects governing height fluctuations of a charged lipid bilayer of thickness $δ$ in an electrolyte characterized by Debye screening length $λ$. We derive voltage- and charge-dependent renormalizations of the effective surface tension and bending rigidity, along with a dispersion relation governing undulatory instabilities. A wide range of prior theoretical results arise as limiting cases of our more general theory when finite-thickness effects are neglected or screening is asymptotically strong. The key new contribution arises from traction moments generated across the finite membrane thickness, which are absent in zero-thickness descriptions. Under physiological screening ($δ/λ\sim 4$), these contributions account for more than $>70\%$ of the total electrostatic correction to both surface tension and bending rigidity. The theory further reveals that surface charges can stabilize the membrane at physiological ionic strengths, increasing the effective tension and shifting electroporation thresholds in a manner that depends on charge asymmetry between the leaflets.

cond-mat.soft↗

arXiv2025

Translational diffusion coefficients of membrane protein aggregates in free and supported lipid membranes

There is increasing evidence that numerous membrane proteins can assemble into aggregates that modulate their function and affect many cellular processes such as signal transduction and endocytosis. Here, we present a theoretical description of the instantaneous translational diffusion coefficients of transmembrane protein aggregates on free and supported lipid membranes using Kirkwood-Riseman theory. We find that hydrodynamic interactions within protein aggregates must be accounted for, as neglecting them yields several times lower diffusion coefficients. By deriving hydrodynamic radii for free and supported lipid membranes, we identify effective length scales that accurately characterize aggregate diffusivities in the presence of hydrodynamic interactions. These findings motivate the approximation of an aggregate by its outline and a random particle distribution inside it. We show that this approach provides a practical method to accurately determine aggregate diffusion coefficients when the particle locations cannot be resolved. The results presented in this article have immediate implications for the formation and function of membrane protein aggregates.

cond-mat.soft↗

arXiv2025

Finite Membrane Thickness Influences Hydrodynamics on the Nanoscale

Many lipid membrane-mediated transport processes--such as mechanically-gated channel activation and solute transport--involve structural and dynamical features on membrane thickness length scales. Most existing membrane models, however, tend to adopt (quasi-)two-dimensional descriptions that neglect thickness-dependent phenomena relevant to internal membrane mechanics, and thus do not fully account for the complex coupling of lipid membranes with their surrounding fluid media. Therefore, explicitly incorporating membrane thickness effects in lipid membrane models will enable a more accurate description of the influence of membrane/fluid coupling on transport phenomena in the vicinity of the bilayer surfaces. Here, we present a continuum model for membrane fluctuations that accounts for finite membrane thickness and resolves hydrodynamic interactions between the bilayer and its surrounding fluid. By applying linear response analysis, we observe that membrane thickness-mediated effects, such as bending-induced lipid reorientations, can generate shear flows close to the membrane surface that slow down the relaxation of nanometer scale shape fluctuations. Additionally, we reveal the emergence of pressure inversion and flow reversal near the membrane interfaces, accompanied by localized stagnation points. Among these, extensional stagnation points give rise to a novel mode of bulk dissipation, originating from bending-induced compression and expansion of the membrane surfaces and their coupling to shear stresses in the fluid. Our findings identify membrane thickness as a key factor in nanoscale hydrodynamics and suggest that its effects may be detectable in fluctuation spectra and can be relevant to interfacial processes such as solute permeability and contact with solid boundaries or other membranes.

cond-mat.soft↗

arXiv2025

The $(2+δ)$-dimensional theory of the electromechanics of lipid membranes: II. Balance laws

This article is the second of a three-part series that derives a self-consistent theoretical framework of the electromechanics of arbitrarily curved lipid membranes. Existing continuum theories commonly treat lipid membranes as strictly two-dimensional surfaces. While this approach is successful in many purely mechanical applications, strict surface theories fail to capture the electric potential drop across lipid membranes, the effects of surface charges, and electric fields within the membrane. Consequently, they do not accurately resolve Maxwell stresses in the interior of the membrane and its proximity. Furthermore, surface theories are generally unable to capture the effects of distinct velocities and tractions at the interfaces between lipid membranes and their surrounding bulk fluids. To address these shortcomings, we apply a recently proposed dimension reduction method to the three-dimensional, electromechanical balance laws. This approach allows us to derive an effective surface theory without taking the limit of vanishing thickness, thus incorporating effects arising from the finite thickness of lipid membranes. We refer to this effective surface theory as $(2 + δ)$-dimensional, where $δ$ indicates the thickness. The resulting $(2 + δ)$-dimensional equations of motion satisfy velocity and traction continuity conditions at the membrane-bulk interfaces, capture the effects of Maxwell stresses, and can directly incorporate three-dimensional constitutive models.

cond-mat.soft↗

arXiv2025

The $(2+δ)$-dimensional theory of the electromechanics of lipid membranes: III. Constitutive models

This article concludes a three-part series developing a self-consistent theoretical framework of the electromechanics of lipid membranes at the continuum scale. Owing to their small thickness, lipid membranes are commonly modeled as two-dimensional surfaces. However, this approach breaks down when considering their electromechanical behavior as it requires accounting for their thickness. To address this, we developed a dimension reduction procedure in part 1 to derive effective surface theories explicitly capturing the thickness of lipid membranes. We applied this method to dimensionally reduce Gauss' law and the electromechanical balance laws and referred to the resulting theory as $(2+δ)$-dimensional, where $δ$ indicates the membrane thickness. However, the $(2+δ)$-dimensional balance laws derived in part 2 are general, and specific material models are required to specialize them to lipid membranes. In this work, we devise appropriate three-dimensional constitutive models that capture the in-plane fluid and out-of-plane elastic behavior of lipid membranes. The viscous behavior is recovered by a three-dimensional Newtonian fluid model, leading to the same viscous stresses as strictly two-dimensional models. The elastic resistance to bending is recovered by imposing a free energy penalty on local volume changes. While this gives rise to the characteristic bending resistance of lipid membranes, it differs in its higher-order curvature terms from the Canham-Helfrich-Evans theory. Furthermore, motivated by the small mid-surface stretch of lipid membranes, we introduce reactive stresses that enforce mid-surface incompressibility, resulting in an effective surface tension. Finally, we use the constitutive and reactive stresses to derive the equations of motion describing the electromechanics of lipid membranes.

cond-mat.soft↗

arXiv2023

The $(2 + δ)$-dimensional theory of the electromechanics of lipid membranes: I. Electrostatics

The coupling of electric fields to the mechanics of lipid membranes gives rise to intriguing electromechanical behavior, as, for example, evidenced by the deformation of lipid vesicles in external electric fields. Electromechanical effects are relevant for many biological processes, such as the propagation of action potentials in axons and the activation of mechanically-gated ion channels. Currently, a theoretical framework describing the electromechanical behavior of arbitrarily curved and deforming lipid membranes does not exist. Purely mechanical models commonly treat lipid membranes as two-dimensional surfaces, ignoring their finite thickness. While holding analytical and numerical merit, this approach cannot describe the coupling of lipid membranes to electric fields and is thus unsuitable for electromechanical models. In a sequence of articles, we derive an \textit{effective} surface theory of the electromechanics of lipid membranes, named a $(2+δ)$-dimensional theory, which has the advantages of surface descriptions while accounting for finite thickness effects. The present article proposes a new, generic dimension-reduction procedure relying on low-order spectral expansions. This procedure is applied to the electrostatics of lipid membranes to obtain a $(2+δ)$-dimensional theory that captures potential differences across and electric fields within lipid membranes. This new model is tested on different geometries relevant for lipid membranes, showing good agreement with the corresponding three-dimensional electrostatics theory.

cond-mat.soft↗

arXiv2020

Arbitrary Lagrangian--Eulerian finite element method for curved and deforming surfaces. I. General theory and application to fluid interfaces

An arbitrary Lagrangian--Eulerian (ALE) finite element method for arbitrarily curved and deforming two-dimensional materials and interfaces is presented here. An ALE theory is developed by endowing the surface with a mesh whose in-plane velocity need not depend on the in-plane material velocity, and can be specified arbitrarily. A finite element implementation of the theory is formulated and applied to curved and deforming surfaces with in-plane incompressible flows. Numerical inf--sup instabilities associated with in-plane incompressibility are removed by locally projecting the surface tension onto a discontinuous space of piecewise linear functions. The general isoparametric finite element method, based on an arbitrary surface parametrization with curvilinear coordinates, is tested and validated against several numerical benchmarks. A new physical insight is obtained by applying the ALE developments to cylindrical fluid films, which are computationally and analytically found to be stable to non-axisymmetric perturbations, and unstable with respect to long-wavelength axisymmetric perturbations when their length exceeds their circumference. A Lagrangian scheme is attained as a special case of the ALE formulation. Though unable to model fluid films with sustained shear flows, the Lagrangian scheme is validated by reproducing the cylindrical instability. However, relative to the ALE results, the Lagrangian simulations are found to have spatially unresolved regions with few nodes, and thus larger errors.

physics.comp-ph↗