arXiv subjects

Yanqiao Zhu

Publications and source records attributed to Yanqiao Zhu.

At least 55 records · Page 3Linked to original sources

arXiv2022

Data-Efficient Brain Connectome Analysis via Multi-Task Meta-Learning

Brain networks characterize complex connectivities among brain regions as graph structures, which provide a powerful means to study brain connectomes. In recent years, graph neural networks have emerged as a prevalent paradigm of learning with structured data. However, most brain network datasets are limited in sample sizes due to the relatively high cost of data acquisition, which hinders the deep learning models from sufficient training. Inspired by meta-learning that learns new concepts fast with limited training examples, this paper studies data-efficient training strategies for analyzing brain connectomes in a cross-dataset setting. Specifically, we propose to meta-train the model on datasets of large sample sizes and transfer the knowledge to small datasets. In addition, we also explore two brain-network-oriented designs, including atlas transformation and adaptive task reweighing. Compared to other pre-training strategies, our meta-learning-based approach achieves higher and stabler performance, which demonstrates the effectiveness of our proposed solutions. The framework is also able to derive new insights regarding the similarities among datasets and diseases in a data-driven fashion.

cs.LG↗

arXiv2022

Joint Embedding of Structural and Functional Brain Networks with Graph Neural Networks for Mental Illness Diagnosis

Multimodal brain networks characterize complex connectivities among different brain regions from both structural and functional aspects and provide a new means for mental disease analysis. Recently, Graph Neural Networks (GNNs) have become a de facto model for analyzing graph-structured data. However, how to employ GNNs to extract effective representations from brain networks in multiple modalities remains rarely explored. Moreover, as brain networks provide no initial node features, how to design informative node attributes and leverage edge weights for GNNs to learn is left unsolved. To this end, we develop a novel multiview GNN for multimodal brain networks. In particular, we regard each modality as a view for brain networks and employ contrastive learning for multimodal fusion. Then, we propose a GNN model which takes advantage of the message passing scheme by propagating messages based on degree statistics and brain region connectivities. Extensive experiments on two real-world disease datasets (HIV and Bipolar) demonstrate the effectiveness of our proposed method over state-of-the-art baselines.

q-bio.NC↗

arXiv2022

A Survey of Pretraining on Graphs: Taxonomy, Methods, and Applications

Pretrained Language Models (PLMs) such as BERT have revolutionized the landscape of Natural Language Processing (NLP). Inspired by their proliferation, tremendous efforts have been devoted to Pretrained Graph Models (PGMs). Owing to the powerful model architectures of PGMs, abundant knowledge from massive labeled and unlabeled graph data can be captured. The knowledge implicitly encoded in model parameters can benefit various downstream tasks and help to alleviate several fundamental issues of learning on graphs. In this paper, we provide the first comprehensive survey for PGMs. We firstly present the limitations of graph representation learning and thus introduce the motivation for graph pre-training. Then, we systematically categorize existing PGMs based on a taxonomy from four different perspectives. Next, we present the applications of PGMs in social recommendation and drug discovery. Finally, we outline several promising research directions that can serve as a guideline for future research.

cs.LG↗

arXiv2022

Latent Structure Mining with Contrastive Modality Fusion for Multimedia Recommendation

Recent years have witnessed growing interests in multimedia recommendation, which aims to predict whether a user will interact with an item with multimodal contents. Previous studies focus on modeling user-item interactions with multimodal features included as side information. However, this scheme is not well-designed for multimedia recommendation. Firstly, only collaborative item-item relationships are implicitly modeled through high-order item-user-item co-occurrences. We argue that the latent semantic item-item structures underlying these multimodal contents could be beneficial for learning better item representations and assist the recommender models to comprehensively discover candidate items. Secondly, previous studies disregard the fine-grained multimodal fusion. Although having access to multiple modalities might allow us to capture rich information, we argue that the simple coarse-grained fusion by linear combination or concatenation in previous work is insufficient to fully understand content information and item relationships.To this end, we propose a latent structure MIning with ContRastive mOdality fusion method (MICRO for brevity). To be specific, we devise a novel modality-aware structure learning module, which learns item-item relationships for each modality. Based on the learned modality-aware latent item relationships, we perform graph convolutions that explicitly inject item affinities to modality-aware item representations. Then, we design a novel contrastive method to fuse multimodal features. These enriched item representations can be plugged into existing collaborative filtering methods to make more accurate recommendations. Extensive experiments on real-world datasets demonstrate the superiority of our method over state-of-the-art baselines.

cs.IR↗

arXiv2022

A Survey on Graph Structure Learning: Progress and Opportunities

Graphs are widely used to describe real-world objects and their interactions. Graph Neural Networks (GNNs) as a de facto model for analyzing graphstructured data, are highly sensitive to the quality of the given graph structures. Therefore, noisy or incomplete graphs often lead to unsatisfactory representations and prevent us from fully understanding the mechanism underlying the system. In pursuit of an optimal graph structure for downstream tasks, recent studies have sparked an effort around the central theme of Graph Structure Learning (GSL), which aims to jointly learn an optimized graph structure and corresponding graph representations. In the presented survey, we broadly review recent progress in GSL methods. Specifically, we first formulate a general pipeline of GSL and review state-of-the-art methods classified by the way of modeling graph structures, followed by applications of GSL across domains. Finally, we point out some issues in current studies and discuss future directions.

cs.LG↗

arXiv2021

An Empirical Study of Graph Contrastive Learning

Graph Contrastive Learning (GCL) establishes a new paradigm for learning graph representations without human annotations. Although remarkable progress has been witnessed recently, the success behind GCL is still left somewhat mysterious. In this work, we first identify several critical design considerations within a general GCL paradigm, including augmentation functions, contrasting modes, contrastive objectives, and negative mining techniques. Then, to understand the interplay of different GCL components, we conduct extensive, controlled experiments over a set of benchmark tasks on datasets across various domains. Our empirical studies suggest a set of general receipts for effective GCL, e.g., simple topology augmentations that produce sparse graph views bring promising performance improvements; contrasting modes should be aligned with the granularities of end tasks. In addition, to foster future research and ease the implementation of GCL algorithms, we develop an easy-to-use library PyGCL, featuring modularized CL components, standardized evaluation, and experiment management. We envision this work to provide useful empirical evidence of effective GCL algorithms and offer several insights for future research.

cs.LG↗

arXiv2021

Structure-Aware Hard Negative Mining for Heterogeneous Graph Contrastive Learning

Recently, heterogeneous Graph Neural Networks (GNNs) have become a de facto model for analyzing HGs, while most of them rely on a relative large number of labeled data. In this work, we investigate Contrastive Learning (CL), a key component in self-supervised approaches, on HGs to alleviate the label scarcity problem. We first generate multiple semantic views according to metapaths and network schemas. Then, by pushing node embeddings corresponding to different semantic views close to each other (positives) and pulling other embeddings apart (negatives), one can obtain informative representations without human annotations. However, this CL approach ignores the relative hardness of negative samples, which may lead to suboptimal performance. Considering the complex graph structure and the smoothing nature of GNNs, we propose a structure-aware hard negative mining scheme that measures hardness by structural characteristics for HGs. By synthesizing more negative nodes, we give larger weights to harder negatives with limited computational overhead to further boost the performance. Empirical studies on three real-world datasets show the effectiveness of our proposed method. The proposed method consistently outperforms existing state-of-the-art methods and notably, even surpasses several supervised counterparts.

cs.LG↗

arXiv2021

Disentangled Self-Attentive Neural Networks for Click-Through Rate Prediction

Click-Through Rate (CTR) prediction, whose aim is to predict the probability of whether a user will click on an item, is an essential task for many online applications. Due to the nature of data sparsity and high dimensionality of CTR prediction, a key to making effective prediction is to model high-order feature interaction. An efficient way to do this is to perform inner product of feature embeddings with self-attentive neural networks. To better model complex feature interaction, in this paper we propose a novel DisentanglEd Self-atTentIve NEtwork (DESTINE) framework for CTR prediction that explicitly decouples the computation of unary feature importance from pairwise interaction. Specifically, the unary term models the general importance of one feature on all other features, whereas the pairwise interaction term contributes to learning the pure impact for each feature pair. We conduct extensive experiments using two real-world benchmark datasets. The results show that DESTINE not only maintains computational efficiency but achieves consistent improvements over state-of-the-art baselines.

cs.IR↗

arXiv2021

Deep Active Learning for Text Classification with Diverse Interpretations

Recently, Deep Neural Networks (DNNs) have made remarkable progress for text classification, which, however, still require a large number of labeled data. To train high-performing models with the minimal annotation cost, active learning is proposed to select and label the most informative samples, yet it is still challenging to measure informativeness of samples used in DNNs. In this paper, inspired by piece-wise linear interpretability of DNNs, we propose a novel Active Learning with DivErse iNterpretations (ALDEN) approach. With local interpretations in DNNs, ALDEN identifies linearly separable regions of samples. Then, it selects samples according to their diversity of local interpretations and queries their labels. To tackle the text classification problem, we choose the word with the most diverse interpretations to represent the whole sentence. Extensive experiments demonstrate that ALDEN consistently outperforms several state-of-the-art deep active learning methods.

cs.CL↗

arXiv2021

Mining Latent Structures for Multimedia Recommendation

Multimedia content is of predominance in the modern Web era. Investigating how users interact with multimodal items is a continuing concern within the rapid development of recommender systems. The majority of previous work focuses on modeling user-item interactions with multimodal features included as side information. However, this scheme is not well-designed for multimedia recommendation. Specifically, only collaborative item-item relationships are implicitly modeled through high-order item-user-item relations. Considering that items are associated with rich contents in multiple modalities, we argue that the latent semantic item-item structures underlying these multimodal contents could be beneficial for learning better item representations and further boosting recommendation. To this end, we propose a LATent sTructure mining method for multImodal reCommEndation, which we term LATTICE for brevity. To be specific, in the proposed LATTICE model, we devise a novel modality-aware structure learning layer, which learns item-item structures for each modality and aggregates multiple modalities to obtain latent item graphs. Based on the learned latent graphs, we perform graph convolutions to explicitly inject high-order item affinities into item representations. These enriched item representations can then be plugged into existing collaborative filtering methods to make more accurate recommendations. Extensive experiments on three real-world datasets demonstrate the superiority of our method over state-of-the-art multimedia recommendation methods and validate the efficacy of mining latent item-item relationships from multimodal features.

cs.IR↗

arXiv2021

BrainNNExplainer: An Interpretable Graph Neural Network Framework for Brain Network based Disease Analysis

Interpretable brain network models for disease prediction are of great value for the advancement of neuroscience. GNNs are promising to model complicated network data, but they are prone to overfitting and suffer from poor interpretability, which prevents their usage in decision-critical scenarios like healthcare. To bridge this gap, we propose BrainNNExplainer, an interpretable GNN framework for brain network analysis. It is mainly composed of two jointly learned modules: a backbone prediction model that is specifically designed for brain networks and an explanation generator that highlights disease-specific prominent brain network connections. Extensive experimental results with visualizations on two challenging disease prediction datasets demonstrate the unique interpretability and outstanding performance of BrainNNExplainer.

cs.LG↗

arXiv2021

When Contrastive Learning Meets Active Learning: A Novel Graph Active Learning Paradigm with Self-Supervision

This paper studies active learning (AL) on graphs, whose purpose is to discover the most informative nodes to maximize the performance of graph neural networks (GNNs). Previously, most graph AL methods focus on learning node representations from a carefully selected labeled dataset with large amount of unlabeled data neglected. Motivated by the success of contrastive learning (CL), we propose a novel paradigm that seamlessly integrates graph AL with CL. While being able to leverage the power of abundant unlabeled data in a self-supervised manner, nodes selected by AL further provide semantic information that can better guide representation learning. Besides, previous work measures the informativeness of nodes without considering the neighborhood propagation scheme of GNNs, so that noisy nodes may be selected. We argue that due to the smoothing nature of GNNs, the central nodes from homophilous subgraphs should benefit the model training most. To this end, we present a minimax selection scheme that explicitly harnesses neighborhood information and discover homophilous subgraphs to facilitate active selection. Comprehensive, confounding-free experiments on five public datasets demonstrate the superiority of our method over state-of-the-arts.

cs.LG↗

arXiv2021

Graph Contrastive Learning with Adaptive Augmentation

Recently, contrastive learning (CL) has emerged as a successful method for unsupervised graph representation learning. Most graph CL methods first perform stochastic augmentation on the input graph to obtain two graph views and maximize the agreement of representations in the two views. Despite the prosperous development of graph CL methods, the design of graph augmentation schemes -- a crucial component in CL -- remains rarely explored. We argue that the data augmentation schemes should preserve intrinsic structures and attributes of graphs, which will force the model to learn representations that are insensitive to perturbation on unimportant nodes and edges. However, most existing methods adopt uniform data augmentation schemes, like uniformly dropping edges and uniformly shuffling features, leading to suboptimal performance. In this paper, we propose a novel graph contrastive representation learning method with adaptive augmentation that incorporates various priors for topological and semantic aspects of the graph. Specifically, on the topology level, we design augmentation schemes based on node centrality measures to highlight important connective structures. On the node attribute level, we corrupt node features by adding more noise to unimportant node features, to enforce the model to recognize underlying semantic information. We perform extensive experiments of node classification on a variety of real-world datasets. Experimental results demonstrate that our proposed method consistently outperforms existing state-of-the-art baselines and even surpasses some supervised counterparts, which validates the effectiveness of the proposed contrastive framework with adaptive augmentation.

cs.LG↗

arXiv2020

GraphAIR: Graph Representation Learning with Neighborhood Aggregation and Interaction

Graph representation learning is of paramount importance for a variety of graph analytical tasks, ranging from node classification to community detection. Recently, graph convolutional networks (GCNs) have been successfully applied for graph representation learning. These GCNs generate node representation by aggregating features from the neighborhoods, which follows the "neighborhood aggregation" scheme. In spite of having achieved promising performance on various tasks, existing GCN-based models have difficulty in well capturing complicated non-linearity of graph data. In this paper, we first theoretically prove that coefficients of the neighborhood interacting terms are relatively small in current models, which explains why GCNs barely outperforms linear models. Then, in order to better capture the complicated non-linearity of graph data, we present a novel GraphAIR framework which models the neighborhood interaction in addition to neighborhood aggregation. Comprehensive experiments conducted on benchmark tasks including node classification and link prediction using public datasets demonstrate the effectiveness of the proposed method.

cs.LG↗

arXiv2020

CAGNN: Cluster-Aware Graph Neural Networks for Unsupervised Graph Representation Learning

Unsupervised graph representation learning aims to learn low-dimensional node embeddings without supervision while preserving graph topological structures and node attributive features. Previous graph neural networks (GNN) require a large number of labeled nodes, which may not be accessible in real-world graph data. In this paper, we present a novel cluster-aware graph neural network (CAGNN) model for unsupervised graph representation learning using self-supervised techniques. In CAGNN, we perform clustering on the node embeddings and update the model parameters by predicting the cluster assignments. Moreover, we observe that graphs often contain inter-class edges, which mislead the GNN model to aggregate noisy information from neighborhood nodes. We further refine the graph topology by strengthening intra-class edges and reducing node connections between different classes based on cluster labels, which better preserves cluster structures in the embedding space. We conduct comprehensive experiments on two benchmark tasks using real-world datasets. The results demonstrate the superior performance of the proposed model over existing baseline methods. Notably, our model gains over 7% improvements in terms of accuracy on node clustering over state-of-the-arts.

cs.LG↗

arXiv2020

Deep Graph Contrastive Representation Learning

Graph representation learning nowadays becomes fundamental in analyzing graph-structured data. Inspired by recent success of contrastive methods, in this paper, we propose a novel framework for unsupervised graph representation learning by leveraging a contrastive objective at the node level. Specifically, we generate two graph views by corruption and learn node representations by maximizing the agreement of node representations in these two views. To provide diverse node contexts for the contrastive objective, we propose a hybrid scheme for generating graph views on both structure and attribute levels. Besides, we provide theoretical justification behind our motivation from two perspectives, mutual information and the classical triplet loss. We perform empirical experiments on both transductive and inductive learning tasks using a variety of real-world datasets. Experimental experiments demonstrate that despite its simplicity, our proposed method consistently outperforms existing state-of-the-art methods by large margins. Moreover, our unsupervised method even surpasses its supervised counterparts on transductive tasks, demonstrating its great potential in real-world applications.

cs.LG↗

arXiv2020

TAGNN: Target Attentive Graph Neural Networks for Session-based Recommendation

Session-based recommendation nowadays plays a vital role in many websites, which aims to predict users' actions based on anonymous sessions. There have emerged many studies that model a session as a sequence or a graph via investigating temporal transitions of items in a session. However, these methods compress a session into one fixed representation vector without considering the target items to be predicted. The fixed vector will restrict the representation ability of the recommender model, considering the diversity of target items and users' interests. In this paper, we propose a novel target attentive graph neural network (TAGNN) model for session-based recommendation. In TAGNN, target-aware attention adaptively activates different user interests with respect to varied target items. The learned interest representation vector varies with different target items, greatly improving the expressiveness of the model. Moreover, TAGNN harnesses the power of graph neural networks to capture rich item transitions in sessions. Comprehensive experiments conducted on real-world datasets demonstrate its superiority over state-of-the-art methods.

cs.IR↗

arXiv2019

Hierarchical Graph Convolutional Networks for Semi-supervised Node Classification

Graph convolutional networks (GCNs) have been successfully applied in node classification tasks of network mining. However, most of these models based on neighborhood aggregation are usually shallow and lack the "graph pooling" mechanism, which prevents the model from obtaining adequate global information. In order to increase the receptive field, we propose a novel deep Hierarchical Graph Convolutional Network (H-GCN) for semi-supervised node classification. H-GCN first repeatedly aggregates structurally similar nodes to hyper-nodes and then refines the coarsened graph to the original to restore the representation for each node. Instead of merely aggregating one- or two-hop neighborhood information, the proposed coarsening procedure enlarges the receptive field for each node, hence more global information can be captured. The proposed H-GCN model shows strong empirical performance on various public benchmark graph datasets, outperforming state-of-the-art methods and acquiring up to 5.9% performance improvement in terms of accuracy. In addition, when only a few labeled samples are provided, our model gains substantial improvements.

cs.SI↗