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Yash Rana

Publications and source records attributed to Yash Rana.

2 recordsLinked to original sources

Long-Range Repulsion Between Chromosomes in Mammalian Oocyte Spindles

During eukaryotic cell division, a microtubule-based structure called the spindle exerts forces on chromosomes, thereby organizing and segregating them Extensive work demonstrates that the forces acting parallel to the spindle axis, including those responsible for separating sister chromatids, are generated by microtubule polymerization and depolymerization, and molecular-motors. In contrast, little is known about the forces acting perpendicular to the spindle axis, which determine the configuration of chromosomes at the metaphase plate, and thus impact nuclear localization and rates of segregation errors. Here, we use quantitative live-cell microscopy to show that metaphase chromosomes are spatially anti-correlated in mouse oocyte spindles, indicating the existence of hitherto unknown long-range forces acting perpendicular to the spindle axis. We explain this observation by first demonstrating that the spindle's microtubule network behaves as a nematic liquid crystal, and then arguing that deformation of the nematic field around embedded chromosomes causes long-range repulsion between them. Our work highlights the surprising relevance of materials physics in understanding the structure, dynamics, and mechanics of cellular structures, and presents a novel and potentially generic mode of chromosome organization in large spindles.

physics.bio-ph

Selection of prebiotic oligonucleotides by cyclic phase separation

The emergence of functional oligonucleotides on early Earth required a molecular selection mechanism to screen for specific sequences with prebiotic functions. Cyclic processes such as daily temperature oscillations were ubiquitous in this environment and could trigger oligonucleotide phase separation. Here, we propose sequence selection based on phase separation cycles realized through sedimentation in a system subjected to the feeding of oligonucleotides. Using theory and experiments with DNA, we show sequence-specific enrichment in the sedimented dense phase, in particular of short 22-mer DNA sequences. The underlying mechanism selects for complementarity, as it enriches sequences that tightly interact in the condensed phase through base-pairing. Our mechanism also enables initially weakly biased pools to enhance their sequence bias or to replace the most abundant sequences as the cycles progress. Our findings provide an example of a selection mechanism that may have eased screening for the first auto-catalytic self-replicating oligonucleotides.

physics.chem-ph