arXiv subjects

Yasin Yilmaz

Publications and source records attributed to Yasin Yilmaz.

At least 37 records · Page 2Linked to original sources

arXiv2025

LLM-Guided Agentic Object Detection for Open-World Understanding

Object detection traditionally relies on fixed category sets, requiring costly re-training to handle novel objects. While Open-World and Open-Vocabulary Object Detection (OWOD and OVOD) improve flexibility, OWOD lacks semantic labels for unknowns, and OVOD depends on user prompts, limiting autonomy. We propose an LLM-guided agentic object detection (LAOD) framework that enables fully label-free, zero-shot detection by prompting a Large Language Model (LLM) to generate scene-specific object names. These are passed to an open-vocabulary detector for localization, allowing the system to adapt its goals dynamically. We introduce two new metrics, Class-Agnostic Average Precision (CAAP) and Semantic Naming Average Precision (SNAP), to separately evaluate localization and naming. Experiments on LVIS, COCO, and COCO-OOD validate our approach, showing strong performance in detecting and naming novel objects. Our method offers enhanced autonomy and adaptability for open-world understanding.

cs.CV↗

arXiv2025

Universal and Efficient Detection of Adversarial Data through Nonuniform Impact on Network Layers

Deep Neural Networks (DNNs) are notoriously vulnerable to adversarial input designs with limited noise budgets. While numerous successful attacks with subtle modifications to original input have been proposed, defense techniques against these attacks are relatively understudied. Existing defense approaches either focus on improving DNN robustness by negating the effects of perturbations or use a secondary model to detect adversarial data. Although equally important, the attack detection approach, which is studied in this work, provides a more practical defense compared to the robustness approach. We show that the existing detection methods are either ineffective against the state-of-the-art attack techniques or computationally inefficient for real-time processing. We propose a novel universal and efficient method to detect adversarial examples by analyzing the varying degrees of impact of attacks on different DNN layers. {Our method trains a lightweight regression model that predicts deeper-layer features from early-layer features, and uses the prediction error to detect adversarial samples.} Through theoretical arguments and extensive experiments, we demonstrate that our detection method is highly effective, computationally efficient for real-time processing, compatible with any DNN architecture, and applicable across different domains, such as image, video, and audio.

cs.LG↗

arXiv2025

Detecting Adversarial Examples

Deep Neural Networks (DNNs) have been shown to be vulnerable to adversarial examples. While numerous successful adversarial attacks have been proposed, defenses against these attacks remain relatively understudied. Existing defense approaches either focus on negating the effects of perturbations caused by the attacks to restore the DNNs' original predictions or use a secondary model to detect adversarial examples. However, these methods often become ineffective due to the continuous advancements in attack techniques. We propose a novel universal and lightweight method to detect adversarial examples by analyzing the layer outputs of DNNs. Our method trains a lightweight regression model that predicts deeper-layer features from early-layer features, and uses the prediction error to detect adversarial samples. Through theoretical justification and extensive experiments, we demonstrate that our detection method is highly effective, compatible with any DNN architecture, and applicable across different domains, such as image, video, and audio.

cs.LG↗

arXiv2025

EAGLE: Efficient Alignment of Generalized Latent Embeddings for Multimodal Survival Prediction with Interpretable Attribution Analysis

Accurate cancer survival prediction requires integration of diverse data modalities that reflect the complex interplay between imaging, clinical parameters, and textual reports. However, existing multimodal approaches suffer from simplistic fusion strategies, massive computational requirements, and lack of interpretability-critical barriers to clinical adoption. We present EAGLE (Efficient Alignment of Generalized Latent Embeddings), a novel deep learning framework that addresses these limitations through attention-based multimodal fusion with comprehensive attribution analysis. EAGLE introduces four key innovations: (1) dynamic cross-modal attention mechanisms that learn hierarchical relationships between modalities, (2) massive dimensionality reduction (99.96%) while maintaining predictive performance, (3) three complementary attribution methods providing patient-level interpretability, and (4) a unified pipeline enabling seamless adaptation across cancer types. We evaluated EAGLE on 911 patients across three distinct malignancies: glioblastoma (GBM, n=160), intraductal papillary mucinous neoplasms (IPMN, n=171), and non-small cell lung cancer (NSCLC, n=580). Patient-level analysis showed high-risk individuals relied more heavily on adverse imaging features, while low-risk patients demonstrated balanced modality contributions. Risk stratification identified clinically meaningful groups with 4-fold (GBM) to 5-fold (NSCLC) differences in median survival, directly informing treatment intensity decisions. By combining state-of-the-art performance with clinical interpretability, EAGLE bridges the gap between advanced AI capabilities and practical healthcare deployment, offering a scalable solution for multimodal survival prediction that enhances both prognostic accuracy and physician trust in automated predictions.

cs.LG↗

arXiv2025

Reliable Radiologic Skeletal Muscle Area Assessment -- A Biomarker for Cancer Cachexia Diagnosis

Cancer cachexia is a common metabolic disorder characterized by severe muscle atrophy which is associated with poor prognosis and quality of life. Monitoring skeletal muscle area (SMA) longitudinally through computed tomography (CT) scans, an imaging modality routinely acquired in cancer care, is an effective way to identify and track this condition. However, existing tools often lack full automation and exhibit inconsistent accuracy, limiting their potential for integration into clinical workflows. To address these challenges, we developed SMAART-AI (Skeletal Muscle Assessment-Automated and Reliable Tool-based on AI), an end-to-end automated pipeline powered by deep learning models (nnU-Net 2D) trained on mid-third lumbar level CT images with 5-fold cross-validation, ensuring generalizability and robustness. SMAART-AI incorporates an uncertainty-based mechanism to flag high-error SMA predictions for expert review, enhancing reliability. We combined the SMA, skeletal muscle index, BMI, and clinical data to train a multi-layer perceptron (MLP) model designed to predict cachexia at the time of cancer diagnosis. Tested on the gastroesophageal cancer dataset, SMAART-AI achieved a Dice score of 97.80% +/- 0.93%, with SMA estimated across all four datasets in this study at a median absolute error of 2.48% compared to manual annotations with SliceOmatic. Uncertainty metrics-variance, entropy, and coefficient of variation-strongly correlated with SMA prediction errors (0.83, 0.76, and 0.73 respectively). The MLP model predicts cachexia with 79% precision, providing clinicians with a reliable tool for early diagnosis and intervention. By combining automation, accuracy, and uncertainty awareness, SMAART-AI bridges the gap between research and clinical application, offering a transformative approach to managing cancer cachexia.

eess.IV↗

arXiv2025

Multimodal AI-driven Biomarker for Early Detection of Cancer Cachexia

Cancer cachexia is a multifactorial syndrome characterized by progressive muscle wasting, metabolic dysfunction, and systemic inflammation, leading to reduced quality of life and increased mortality. Despite extensive research, no single definitive biomarker exists, as cachexia-related indicators such as serum biomarkers, skeletal muscle measurements, and metabolic abnormalities often overlap with other conditions. Existing composite indices, including the Cancer Cachexia Index (CXI), Modified CXI (mCXI), and Cachexia Score (CASCO), integrate multiple biomarkers but lack standardized thresholds, limiting their clinical utility. This study proposes a multimodal AI-based biomarker for early cancer cachexia detection, leveraging open-source large language models (LLMs) and foundation models trained on medical data. The approach integrates heterogeneous patient data, including demographics, disease status, lab reports, radiological imaging (CT scans), and clinical notes, using a machine learning framework that can handle missing data. Unlike previous AI-based models trained on curated datasets, this method utilizes routinely collected clinical data, enhancing real-world applicability. Additionally, the model incorporates confidence estimation, allowing the identification of cases requiring expert review for precise clinical interpretation. Preliminary findings demonstrate that integrating multiple data modalities improves cachexia prediction accuracy at the time of cancer diagnosis. The AI-based biomarker dynamically adapts to patient-specific factors such as age, race, ethnicity, weight, cancer type, and stage, avoiding the limitations of fixed-threshold biomarkers. This multimodal AI biomarker provides a scalable and clinically viable solution for early cancer cachexia detection, facilitating personalized interventions and potentially improving treatment outcomes and patient survival.

eess.IV↗

arXiv2025

ComplexVAD: Detecting Interaction Anomalies in Video

Existing video anomaly detection datasets are inadequate for representing complex anomalies that occur due to the interactions between objects. The absence of complex anomalies in previous video anomaly detection datasets affects research by shifting the focus onto simple anomalies. To address this problem, we introduce a new large-scale dataset: ComplexVAD. In addition, we propose a novel method to detect complex anomalies via modeling the interactions between objects using a scene graph with spatio-temporal attributes. With our proposed method and two other state-of-the-art video anomaly detection methods, we obtain baseline scores on ComplexVAD and demonstrate that our new method outperforms existing works.

cs.CV↗

arXiv2024

WPMixer: Efficient Multi-Resolution Mixing for Long-Term Time Series Forecasting

Time series forecasting is crucial for various applications, such as weather forecasting, power load forecasting, and financial analysis. In recent studies, MLP-mixer models for time series forecasting have been shown as a promising alternative to transformer-based models. However, the performance of these models is still yet to reach its potential. In this paper, we propose Wavelet Patch Mixer (WPMixer), a novel MLP-based model, for long-term time series forecasting, which leverages the benefits of patching, multi-resolution wavelet decomposition, and mixing. Our model is based on three key components: (i) multi-resolution wavelet decomposition, (ii) patching and embedding, and (iii) MLP mixing. Multi-resolution wavelet decomposition efficiently extracts information in both the frequency and time domains. Patching allows the model to capture an extended history with a look-back window and enhances capturing local information while MLP mixing incorporates global information. Our model significantly outperforms state-of-the-art MLP-based and transformer-based models for long-term time series forecasting in a computationally efficient way, demonstrating its efficacy and potential for practical applications.

cs.LG↗

arXiv2024

Future-Proofing Medical Imaging with Privacy-Preserving Federated Learning and Uncertainty Quantification: A Review

Artificial Intelligence (AI) has demonstrated significant potential in automating various medical imaging tasks, which could soon become routine in clinical practice for disease diagnosis, prognosis, treatment planning, and post-treatment surveillance. However, the privacy concerns surrounding patient data present a major barrier to the widespread adoption of AI in medical imaging, as large, diverse training datasets are essential for developing accurate, generalizable, and robust Artificial intelligence models. Federated Learning (FL) offers a solution that enables organizations to train AI models collaboratively without sharing sensitive data. federated learning exchanges model training information, such as gradients, between the participating sites. Despite its promise, federated learning is still in its developmental stages and faces several challenges. Notably, sensitive information can still be inferred from the gradients shared during model training. Quantifying AI models' uncertainty is vital due to potential data distribution shifts post-deployment, which can affect model performance. Uncertainty quantification (UQ) in FL is particularly challenging due to data heterogeneity across participating sites. This review provides a comprehensive examination of FL, privacy-preserving FL (PPFL), and UQ in FL. We identify key gaps in current FL methodologies and propose future research directions to enhance data privacy and trustworthiness in medical imaging applications.

eess.IV↗

arXiv2024

Privacy Preserving Federated Learning in Medical Imaging with Uncertainty Estimation

Machine learning (ML) and Artificial Intelligence (AI) have fueled remarkable advancements, particularly in healthcare. Within medical imaging, ML models hold the promise of improving disease diagnoses, treatment planning, and post-treatment monitoring. Various computer vision tasks like image classification, object detection, and image segmentation are poised to become routine in clinical analysis. However, privacy concerns surrounding patient data hinder the assembly of large training datasets needed for developing and training accurate, robust, and generalizable models. Federated Learning (FL) emerges as a compelling solution, enabling organizations to collaborate on ML model training by sharing model training information (gradients) rather than data (e.g., medical images). FL's distributed learning framework facilitates inter-institutional collaboration while preserving patient privacy. However, FL, while robust in privacy preservation, faces several challenges. Sensitive information can still be gleaned from shared gradients that are passed on between organizations during model training. Additionally, in medical imaging, quantifying model confidence\uncertainty accurately is crucial due to the noise and artifacts present in the data. Uncertainty estimation in FL encounters unique hurdles due to data heterogeneity across organizations. This paper offers a comprehensive review of FL, privacy preservation, and uncertainty estimation, with a focus on medical imaging. Alongside a survey of current research, we identify gaps in the field and suggest future directions for FL research to enhance privacy and address noisy medical imaging data challenges.

cs.LG↗

arXiv2024

Multimodal Attack Detection for Action Recognition Models

Adversarial machine learning attacks on video action recognition models is a growing research area and many effective attacks were introduced in recent years. These attacks show that action recognition models can be breached in many ways. Hence using these models in practice raises significant security concerns. However, there are very few works which focus on defending against or detecting attacks. In this work, we propose a novel universal detection method which is compatible with any action recognition model. In our extensive experiments, we show that our method consistently detects various attacks against different target models with high true positive rates while satisfying very low false positive rates. Tested against four state-of-the-art attacks targeting four action recognition models, the proposed detector achieves an average AUC of 0.911 over 16 test cases while the best performance achieved by the existing detectors is 0.645 average AUC. This 41.2% improvement is enabled by the robustness of the proposed detector to varying attack methods and target models. The lowest AUC achieved by our detector across the 16 test cases is 0.837 while the competing detector's performance drops as low as 0.211. We also show that the proposed detector is robust to varying attack strengths. In addition, we analyze our method's real-time performance with different hardware setups to demonstrate its potential as a practical defense mechanism.

cs.CR↗

arXiv2023

Building Flexible, Scalable, and Machine Learning-ready Multimodal Oncology Datasets

The advancements in data acquisition, storage, and processing techniques have resulted in the rapid growth of heterogeneous medical data. Integrating radiological scans, histopathology images, and molecular information with clinical data is essential for developing a holistic understanding of the disease and optimizing treatment. The need for integrating data from multiple sources is further pronounced in complex diseases such as cancer for enabling precision medicine and personalized treatments. This work proposes Multimodal Integration of Oncology Data System (MINDS) - a flexible, scalable, and cost-effective metadata framework for efficiently fusing disparate data from public sources such as the Cancer Research Data Commons (CRDC) into an interconnected, patient-centric framework. MINDS offers an interface for exploring relationships across data types and building cohorts for developing large-scale multimodal machine learning models. By harmonizing multimodal data, MINDS aims to potentially empower researchers with greater analytical ability to uncover diagnostic and prognostic insights and enable evidence-based personalized care. MINDS tracks granular end-to-end data provenance, ensuring reproducibility and transparency. The cloud-native architecture of MINDS can handle exponential data growth in a secure, cost-optimized manner while ensuring substantial storage optimization, replication avoidance, and dynamic access capabilities. Auto-scaling, access controls, and other mechanisms guarantee pipelines' scalability and security. MINDS overcomes the limitations of existing biomedical data silos via an interoperable metadata-driven approach that represents a pivotal step toward the future of oncology data integration.

cs.LG↗

arXiv2023

Deep Learning-based RF Fingerprint Authentication with Chaotic Antenna Arrays

Radio frequency (RF) fingerprinting is a tool which allows for authentication by utilizing distinct and random distortions in a received signal based on characteristics of the transmitter. We introduce a deep learning-based authentication method for a novel RF fingerprinting system called Physically Unclonable Wireless Systems (PUWS). An element of PUWS is based on the concept of Chaotic Antenna Arrays (CAAs) that can be cost effectively manufactured by utilizing mask-free laser-enhanced direct print additive manufacturing (LE-DPAM). In our experiments, using simulation data of 300 CAAs each exhibiting 4 antenna elements, we test 3 different convolutional neural network (CNN) architectures under different channel conditions and compare their authentication performance to the current state-of-the-art RF fingerprinting authentication methods.

eess.SP↗

arXiv2022

End-to-End Semantic Video Transformer for Zero-Shot Action Recognition

While video action recognition has been an active area of research for several years, zero-shot action recognition has only recently started gaining traction. In this work, we propose a novel end-to-end trained transformer model which is capable of capturing long range spatiotemporal dependencies efficiently, contrary to existing approaches which use 3D-CNNs. Moreover, to address a common ambiguity in the existing works about classes that can be considered as previously unseen, we propose a new experimentation setup that satisfies the zero-shot learning premise for action recognition by avoiding overlap between the training and testing classes. The proposed approach significantly outperforms the state of the arts in zero-shot action recognition in terms of the the top-1 accuracy on UCF-101, HMDB-51 and ActivityNet datasets. The code and proposed experimentation setup are available in GitHub: https://github.com/Secure-and-Intelligent-Systems-Lab/SemanticVideoTransformer

cs.CV↗

arXiv2022

RSU-Based Online Intrusion Detection and Mitigation for VANET

Secure vehicular communication is a critical factor for secure traffic management. Effective security in intelligent transportation systems (ITS) requires effective and timely intrusion detection systems (IDS). In this paper, we consider false data injection attacks and distributed denial-of-service (DDoS) attacks, especially the stealthy DDoS attacks, targeting the integrity and availability, respectively, in vehicular ad-hoc networks (VANET). Novel statistical intrusion detection and mitigation techniques based on centralized communications through roadside units (RSU) are proposed for the considered attacks. The performance of the proposed methods are evaluated using a traffic simulator and a real traffic dataset. Comparisons with the state-of-the-art solutions clearly demonstrate the superior performance of the proposed methods in terms of quick and accurate detection and localization of cyberattacks.

cs.CR↗

arXiv2022

Adversarial Machine Learning Attacks Against Video Anomaly Detection Systems

Anomaly detection in videos is an important computer vision problem with various applications including automated video surveillance. Although adversarial attacks on image understanding models have been heavily investigated, there is not much work on adversarial machine learning targeting video understanding models and no previous work which focuses on video anomaly detection. To this end, we investigate an adversarial machine learning attack against video anomaly detection systems, that can be implemented via an easy-to-perform cyber-attack. Since surveillance cameras are usually connected to the server running the anomaly detection model through a wireless network, they are prone to cyber-attacks targeting the wireless connection. We demonstrate how Wi-Fi deauthentication attack, a notoriously easy-to-perform and effective denial-of-service (DoS) attack, can be utilized to generate adversarial data for video anomaly detection systems. Specifically, we apply several effects caused by the Wi-Fi deauthentication attack on video quality (e.g., slow down, freeze, fast forward, low resolution) to the popular benchmark datasets for video anomaly detection. Our experiments with several state-of-the-art anomaly detection models show that the attackers can significantly undermine the reliability of video anomaly detection systems by causing frequent false alarms and hiding physical anomalies from the surveillance system.

cs.CV↗

arXiv2022

TiSAT: Time Series Anomaly Transformer

While anomaly detection in time series has been an active area of research for several years, most recent approaches employ an inadequate evaluation criterion leading to an inflated F1 score. We show that a rudimentary Random Guess method can outperform state-of-the-art detectors in terms of this popular but faulty evaluation criterion. In this work, we propose a proper evaluation metric that measures the timeliness and precision of detecting sequential anomalies. Moreover, most existing approaches are unable to capture temporal features from long sequences. Self-attention based approaches, such as transformers, have been demonstrated to be particularly efficient in capturing long-range dependencies while being computationally efficient during training and inference. We also propose an efficient transformer approach for anomaly detection in time series and extensively evaluate our proposed approach on several popular benchmark datasets.

cs.LG↗

arXiv2021

Multimodal Data Fusion in High-Dimensional Heterogeneous Datasets via Generative Models

The commonly used latent space embedding techniques, such as Principal Component Analysis, Factor Analysis, and manifold learning techniques, are typically used for learning effective representations of homogeneous data. However, they do not readily extend to heterogeneous data that are a combination of numerical and categorical variables, e.g., arising from linked GPS and text data. In this paper, we are interested in learning probabilistic generative models from high-dimensional heterogeneous data in an unsupervised fashion. The learned generative model provides latent unified representations that capture the factors common to the multiple dimensions of the data, and thus enable fusing multimodal data for various machine learning tasks. Following a Bayesian approach, we propose a general framework that combines disparate data types through the natural parameterization of the exponential family of distributions. To scale the model inference to millions of instances with thousands of features, we use the Laplace-Bernstein approximation for posterior computations involving nonlinear link functions. The proposed algorithm is presented in detail for the commonly encountered heterogeneous datasets with real-valued (Gaussian) and categorical (multinomial) features. Experiments on two high-dimensional and heterogeneous datasets (NYC Taxi and MovieLens-10M) demonstrate the scalability and competitive performance of the proposed algorithm on different machine learning tasks such as anomaly detection, data imputation, and recommender systems.

cs.LG↗