arXiv subjects

Yasmine Meroz

Publications and source records attributed to Yasmine Meroz.

9 recordsLinked to original sources

arXiv2026

Physics of Computation and Behavior in Plants

Plants solve complex problems without centralized control, relying instead on growth-driven dynamics to sense, navigate, and optimize resource acquisition. This review presents a unified physical framework for understanding plant behavior through three complementary principles: distributed physical computation, embodied mechanical intelligence, and functional stochasticity. Tropic responses and circumnutations are interpreted as spatio-temporal dynamical systems in which information is encoded in biochemical and mechanical fields, integrated over space and time, and translated into differential growth. Mechanical interactions couple morphology to environmental constraints, enabling computation through material properties. Stochastic fluctuations, from molecular to organismal scales, act as functional resources that enhance sensing, exploration, and collective organization. Together, these processes position plants as a model system for decentralized computation in active matter, where behavior and structure emerge from the interplay of growth, transport, mechanics, and noise.

cond-mat.other↗

arXiv2023

Noisy circumnutations facilitate self-organized shade avoidance in sunflowers

Circumnutations are widespread in plants and typically associated with exploratory movements, however a quantitative understanding of their role remains elusive. In this study we report, for the first time, the role of noisy circumnutations in facilitating an optimal growth pattern within a crowded group of mutually shading plants. We revisit the problem of self-organization observed for sunflowers, mediated by shade response interactions. Our analysis reveals that circumnutation movements conform to a bounded random walk characterized by a remarkably broad distribution of velocities, covering three orders of magnitude. In motile animal systems such wide distributions of movement velocities are frequently identified with enhancement of behavioral processes, suggesting that circumnutations may serve as a source of functional noise. To test our hypothesis, we developed a parsimonious model of interacting growing disks, informed by experiments, successfully capturing the characteristic dynamics of individual and multiple interacting plants. Employing our simulation framework we examine the role of circumnutations in the system, and find that the observed breadth of the velocity distribution confers advantageous effects by facilitating exploration of potential configurations, leading to an optimized arrangement with minimal shading. These findings represent the first report of functional noise in plant movements, and establishes a theoretical foundation for investigating how plants navigate their environment by employing computational processes such as task-oriented processes, optimization, and active sensing.

q-bio.TO↗

arXiv2017

Intermittent Granular Dynamics at a Seismogenic Plate Boundary

Earthquakes at seismogenic plate boundaries are a response to the differential motions of tectonic blocks embedded within a geometrically complex network of branching and coalescing faults. Elastic strain is accumulated at a slow strain rate of the order of $10^{-15}$ s$^{-1}$, and released intermittently at intervals $>100$ years, in the form of rapid (seconds to minutes) coseismic ruptures. The development of macroscopic models of quasi-static planar tectonic dynamics at these plate boundaries has remained challenging due to uncertainty with regard to the spatial and kinematic complexity of fault system behaviors. In particular, the characteristic length scale of kinematically distinct tectonic structures is poorly constrained. Here we analyze fluctuations in GPS recordings of interseismic velocities from the southern California plate boundary, identifying heavy-tailed scaling behavior. This suggests that the plate boundary can be understood as a densely packed granular medium near the jamming transition, with a characteristic length scale of $91 \pm 20$ km. In this picture fault and block systems may rapidly rearrange the distribution of forces within them, driving a mixture of transient and intermittent fault slip behaviors over tectonic time scales.

physics.geo-ph↗

arXiv2016

The Kinematics of Plant Nutation Reveals a Simple Relation Between Curvature and the Orientation of Differential Growth

Nutation is an oscillatory movement that plants display during their development. Despite its ubiquity among plants movements, the relation between the observed movement and the underlying biological mechanisms remains unclear. Here we show that the kinematics of the full organ in 3D gives a simple picture of plant nutation, where the orientation of the curvature along the main axis of the organ aligns with the direction of maximal differential growth. Within this framework we reexamine the validity of widely used experimental measurements of the apical tip as markers of growth dynamics. We show that though this relation is correct under certain conditions, it does not generally hold, and is not sufficient to uncover the specific role of each mechanism. As an example we re-interpret previously measured experimental observations using our model.

q-bio.TO↗

arXiv2015

Collisional Statistics and Dynamics of 2D Hard-Disk Systems: From Fluid to Solid

We perform extensive MD simulations of two-dimensional systems of hard disks, focusing on the \emph{on}-collision statistical properties. We analyze the distribution functions of velocity, free flight time and free path length for packing fractions ranging from the fluid to the solid phase. The behaviors of the mean free flight time and path length between subsequent collisions are found to drastically change in the coexistence phase. We show that single particle dynamical properties behave analogously in collisional and continuous time representations, exhibiting apparent crossovers between the fluid and the solid phase. We find that, both in collisional and continuous time representation, the mean square displacement, velocity autocorrelation functions, intermediate scattering functions and self part of the van Hove function (propagator), closely reproduce the same behavior exhibited by the corresponding quantities in granular media, colloids and supercooled liquids close to the glass or jamming transition.

cond-mat.stat-mech↗

arXiv2014

Neuromimetic Circuits with Synaptic Devices based on Strongly Correlated Electron Systems

Strongly correlated electron systems such as the rare-earth nickelates (RNiO3, R = rare-earth element) can exhibit synapse-like continuous long term potentiation and depression when gated with ionic liquids; exploiting the extreme sensitivity of coupled charge, spin, orbital, and lattice degrees of freedom to stoichiometry. We present experimental real-time, device-level classical conditioning and unlearning using nickelate-based synaptic devices in an electronic circuit compatible with both excitatory and inhibitory neurons. We establish a physical model for the device behavior based on electric-field driven coupled ionic-electronic diffusion that can be utilized for design of more complex systems. We use the model to simulate a variety of associate and non-associative learning mechanisms, as well as a feedforward recurrent network for storing memory. Our circuit intuitively parallels biological neural architectures, and it can be readily generalized to other forms of cellular learning and extinction. The simulation of neural function with electronic device analogues may provide insight into biological processes such as decision making, learning and adaptation, while facilitating advanced parallel information processing in hardware.

cond-mat.str-el↗

arXiv2013

Memory Effects in the Electron Glass

We investigate theoretically the slow non-exponential relaxation dynamics of the electron glass out of equilibrium, where a sudden change in carrier density reveals interesting memory effects. The self-consistent model of the dynamics of the occupation numbers in the system successfully recovers the general behavior found in experiments. Our numerical analysis is consistent with both the expected logarithmic relaxation and our understanding of how increasing disorder or interaction slows down the relaxation process, thus yielding a consistent picture of the electron glass. We also present a novel finite size "domino" effect where the connection to the leads affects the relaxation process of the electron glass in mesoscopic systems. This effect speeds up the relaxation process, and even reverses the expected effect of interaction; stronger interaction then leading to a faster relaxation.

cond-mat.dis-nn↗

arXiv2012

A Test for Determining a Subdiffusive Model in Ergodic Systems from Single Trajectories

Experiments on particles' motion in living cells show that it is often subdiffusive. This subdiffusion may be due to trapping, percolation-like structures, or viscoelatic behavior of the medium. While the models based on trapping (leading to continuous-time random walks) can easily be distinguished from the rest by testing their non-ergodicity, the latter two cases are harder to distinguish. We propose a statistical test for distinguishing between these two based on the space-filling properties of trajectories, and prove its feasibility and specificity using synthetic data. We moreover present a flow-chart for making a decision on a type of subdiffusion for a broader class of models.

cond-mat.dis-nn↗

arXiv2011

The Unequal Twins - Probability Distributions Aren't Everything

It is the common lore to assume that knowing the equation for the probability distribution function (PDF) of a stochastic model as a function of time tells the whole picture defining all other characteristics of the model. We show that this is not the case by comparing two exactly solvable models of anomalous diffusion due to geometric constraints: The comb model and the random walk on a random walk (RWRW). We show that though the two models have exactly the same PDFs, they differ in other respects, like their first passage time (FPT) distributions, their autocorrelation functions and their aging properties.

cond-mat.stat-mech↗