arXiv subjects

Yasmine S. Al-Hamdani

Publications and source records attributed to Yasmine S. Al-Hamdani.

14 recordsLinked to original sources

arXiv2026

Towards viable H$_2$ storage in Ca decorated low-dimensional materials with insights from reference quantum Monte Carlo

Hydrogen technology is set to be a key energy alternative for mitigating pollution and reducing CO$_2$ emissions. However, the current storage mechanism of hydrogen molecules in carbon fibre tanks detracts from the fuel economy of hydrogen in mobile applications, necessitating the development of alternative storage mechanisms. Adsorbing hydrogen in its molecular form (H$_2$) at typical operating conditions of proton exchange membranes can potentially meet storage requirements. However, H$_2$ is the smallest molecule with only two electrons and therefore it has very limited propensity to physisorb in a material within the binding energy window of $-0.2$ to $-0.4$ eV that is suitable for storage. Calcium atom decorators on graphene have previously shown promise for tunable H$_2$ binding, but the system is thermodynamically unstable toward the formation of calcium hydride. Moreover, the absolute adsorption of H$_2$ is challenging to predict accurately and is typically overestimated with van der Waals inclusive density functional approximations. In this work, we perform state-of-the-art fixed-node diffusion Monte Carlo alongside a selection of density functional approximations for two strategies of anchoring Ca: (i) Ca on boron doped graphene and (ii) Ca inside carbon nanotubes. We predict reliable Ca and H$_2$ binding energies, and establish that Ca is anchored inside carbon nanotubes and on boron doped graphene, while boosting the H$_2$ adsorption energy. Importantly, the H$_2$ adsorption energy is found to be improved by the anchoring strategies, with the energy inside a Ca decorated carbon nanotube reaching the viable storage window. The reference DMC binding energies provide much-needed benchmarks for developing data-driven methods and guiding experiment in the systematic design of hydrogen storage materials.

cond-mat.mtrl-sci↗

arXiv2025

Reproducibility of fixed-node diffusion Monte Carlo across diverse community codes: The case of water-methane dimer

Fixed-node diffusion quantum Monte Carlo (FN-DMC) is a widely-trusted many-body method for solving the Schrödinger equation, known for its reliable predictions of material and molecular properties. Furthermore, its excellent scalability with system complexity and near-perfect utilization of computational power makes FN-DMC ideally positioned to leverage new advances in computing to address increasingly complex scientific problems. Even though the method is widely used as a computational gold standard, reproducibility across the numerous FN-DMC code implementations has yet to be demonstrated. This difficulty stems from the diverse array of DMC algorithms and trial wave functions, compounded by the method's inherent stochastic nature. This study represents a community-wide effort to assess the reproducibility of the method, affirming that: Yes, FN-DMC is reproducible (when handled with care). Using the water-methane dimer as the canonical test case, we compare results from eleven different FN-DMC codes and show that the approximations to treat the non-locality of pseudopotentials are the primary source of the discrepancies between them. In particular, we demonstrate that, for the same choice of determinantal component in the trial wave function, reliable and reproducible predictions can be achieved by employing the T-move (TM), the determinant locality approximation (DLA), or the determinant T-move (DTM) schemes, while the older locality approximation (LA) leads to considerable variability in results. These findings demonstrate that, with appropriate choices of algorithmic details, fixed-node DMC is reproducible across diverse community codes-highlighting the maturity and robustness of the method as a tool for open and reliable computational science.

physics.comp-ph↗

arXiv2025

Systematic discrepancies between reference methods for non-covalent interactions within the S66 dataset

The accurate treatment of non-covalent interactions is necessary to model a wide range of applications, from molecular crystals to surface catalysts to aqueous solutions and many more. Quantum diffusion Monte Carlo (DMC) and coupled cluster theory with single, double and perturbative triple excitations [CCSD(T)] are considered two widely-trusted methods for treating non-covalent interactions. However, while they have been well-validated for small molecules, recent work has indicated that these two methods can disagree by more than 7.5 kcal/mol for larger systems. The origin of this discrepancy remains unknown. Moreover, the lack of systematic comparisons, particularly for medium-sized complexes, has made it difficult to identify which systems may be prone to such disagreements and the potential scale of these differences. In this work, we leverage the latest developments in DMC to compute interaction energies for the entire S66 dataset, containing 66 medium-sized complexes with a balanced representation of dispersion and electrostatic interactions. Comparison to previous CCSD(T) references reveals systematic trends, with DMC predicting stronger binding than CCSD(T) for electrostatic-dominated systems, while the binding becomes weaker for dispersion-dominated systems. We show that the relative strength of this discrepancy is correlated to the ratio of electrostatic and dispersion interactions, as obtained from energy decomposition analysis methods. Finally, we have pinpointed model systems: the hydrogen-bonded acetic acid dimer (ID 20) and dispersion-dominated uracil-cyclopentane dimer (ID 42), where these discrepancies are particularly prominent. These systems offer cost-effective benchmarks to guide future developments in DMC, CCSD(T) as well as the wider electronic structure theory community.

physics.chem-ph↗

arXiv2024

Cooperative CO$_2$ capture via oxalate formation on metal-decorated graphene

CO$_2$ capture using carbon-based materials, particularly graphene and graphene-like materials, is a promising strategy to deal with CO$_2$ emissions. However, significant gaps remain in our understanding of the molecular-level interaction between CO$_2$ molecules and graphene, particularly, in terms of chemical bonding and electron transfer. In this work, we employ random structure search and density functional theory to understand the adsorption of CO$_2$ molecules on Ca, Sr, Na, K, and Ti decorated graphene surfaces. Compared to the pristine material, we observe enhanced CO$_2$ adsorption on the decorated graphene surfaces. Particularly on group 2 metals and titanium decorated graphene, CO$_2$ can be strongly chemisorbed as a bent CO$_2$ anion or as an oxalate, depending on the number of CO$_2$ molecules. Electronic structure analysis reveals the adsorption mechanism to involve an ionic charge transfer from the metal adatom to the adsorbed CO$_2$. Overall, this study suggests that reducing CO$_2$ to oxalate on group 2 metals and titanium metal-decorated graphene surfaces is a potential strategy for CO$_2$ storage.

cond-mat.mtrl-sci↗

arXiv2023

Unravelling H$_2$ chemisorption and physisorption on metal decorated graphene using quantum Monte Carlo

Molecular hydrogen is at the core of hydrogen energy applications and has the potential to significantly reduce the use of carbon dioxide emitting energy processes. However, hydrogen gas storage is a major bottleneck for its large-scale use as current storage methods are energy intensive. Among different storage methods, physisorbing molecular hydrogen at ambient pressure and temperatures is a promising alternative - particularly thanks to tuneable lightweight nanomaterials and high throughput screening methods. Nonetheless, understanding hydrogen adsorption in well-defined nanomaterials remains experimentally challenging and reference information is scarce despite the proliferation of works predicting hydrogen adsorption. In this work, we focus on Li, Na, Ca, and K, decorated graphene sheets as substrates for hydrogen adsorption and compute the most accurate adsorption energies available to date using quantum diffusion Monte Carlo (DMC). Building on our previous insights at the density functional theory (DFT) level, we find that a weak covalent chemisorption of molecular hydrogen, known as Kubas binding, is feasible on Ca decorated graphene according to DMC, in agreement with DFT. This finding is in contrast to previous DMC predictions of the 4H$_2$/Ca$^+$ gas cluster where chemisorption is not favoured. However, we find that the adsorption energy of hydrogen on metal decorated graphene according to a widely-used DFT method is not fully consistent with DMC and the discrepancies are not systematic. The reference adsorption energies reported herein can be used to find better work-horse methods for application in large-scale modelling of hydrogen adsorption. Furthermore, the implications of this work affect strategies for finding suitable hydrogen storage materials and high-throughput methods.

cond-mat.mtrl-sci↗

arXiv2022

Mechanisms of adsorbing hydrogen gas on metal decorated graphene

Hydrogen is a key player in global strategies to reduce greenhouse gas emissions. In order to make hydrogen a widely-used fuel, we require more efficient methods of storing it than the current standard of pressurized cylinders. An alternative method is to adsorb H$_2$ in a material and avoid the use of high pressures. Among many potential materials, layered materials such as graphene present a practical advantage as they are lightweight. However, graphene and other 2D materials typically bind H$_2$ too weakly to store it at the typical operating conditions of a hydrogen fuel cell. Modifying the material, for example by decorating graphene with adatoms, can strengthen the adsorption energy of H$_2$ molecules, but the underlying mechanisms are still not well understood. In this work, we systematically screen alkali and alkaline earth metal decorated graphene sheets for the adsorption of hydrogen gas from first principles, and focus on the mechanisms of binding. We show that there are three mechanisms of adsorption on metal decorated graphene and each leads to distinctly different hydrogen adsorption structures. The three mechanisms can be described as weak van der Waals physisorption, metal adatom facilitated polarization, and Kubas adsorption. Among these mechanisms, we find that Kubas adsorption is easily perturbed by an external electric field, providing a way to tune H$_2$ adsorption.

cond-mat.mtrl-sci↗

arXiv2020

Interactions between Large Molecules: Puzzle for Reference Quantum-Mechanical Methods

Quantum-mechanical methods are widely used for understanding molecular interactions throughout biology, chemistry, and materials science. Quantum diffusion Monte Carlo (DMC) and coupled cluster with single, double, and perturbative triple excitations [CCSD(T)] are two state-of-the-art and trusted wavefunction methods that have been categorically shown to yield accurate interaction energies for small organic molecules. These methods provide valuable reference information for widely-used semi-empirical and machine learning potentials, especially where experimental information is scarce. However, agreement for systems beyond small molecules is a crucial remaining milestone for cementing the benchmark accuracy of these methods. Approaching such well-converged predictive power in larger molecules has motivated major developments in CCSD(T) as well as DMC algorithms in the past years, resulting in orders of magnitude time-to-solution reductions. Here, we show that CCSD(T) and DMC interaction energies are not in consistent agreement for a set of polarizable supramolecules. Whilst agreement is found for some of the complexes, in a few key systems disagreements of up to 8 kcal/mol remained. This leads to differences of up to 6 orders of magnitude in the corresponding binding association constant at room temperature for systems which are well within the accustomed domain of applicability for both methods. These findings thus indicate that more caution is required when aiming at reproducible non-covalent interactions between extended molecules. Our data contradicts the expectation that the most comprehensive and robust wavefunction methods predict identical non-covalent interactions and indicate an unsolved challenge for benchmark approaches.

physics.chem-ph↗

arXiv2020

Coulomb Interactions between Dipolar Quantum Fluctuations in van der Waals Bound Molecules and Materials

Mutual Coulomb interactions between electrons lead to a plethora of interesting physical and chemical effects, especially if those interactions involve many fluctuating electrons over large spatial scales. Here, we identify and study in detail the Coulomb interaction between dipolar quantum fluctuations in the context of van der Waals complexes and materials. Up to now, the interaction arising from the modification of the electron density due to quantum van der Waals interactions was considered to be vanishingly small. We demonstrate that in supramolecular systems and for molecules embedded in nanostructures, such contributions can amount to up to 6 kJ/mol and can even lead to qualitative changes in the long-range vdW interaction. Taking into account these broad implications, we advocate for the systematic assessment of so-called Coulomb singles in large molecular systems and discuss their relevance for explaining several recent puzzling experimental observations of collective behavior in nanostructured materials.

physics.chem-ph↗

arXiv2017

Properties of the water to boron nitride interaction: from zero to two dimensions with benchmark accuracy

Molecular adsorption on surfaces plays an important part in catalysis, corrosion, desalination, and various other processes that are relevant to industry and in nature. As a complement to experiments, accurate adsorption energies can be obtained using various sophisticated electronic structure methods that can now be applied to periodic systems. The adsorption energy of water on boron nitride substrates, going from zero to 2-dimensional periodicity, is particularly interesting as it calls for an accurate treatment of polarizable electrostatics and dispersion interactions, as well as posing a practical challenge to experiments and electronic structure methods. Here, we present reference adsorption energies, static polarizabilities, and dynamic polarizabilities, for water on BN substrates of varying size and dimension. Adsorption energies are computed with coupled cluster theory, fixed-node quantum Monte Carlo (FNQMC), the random phase approximation (RPA), and second order Møller-Plesset (MP2) theory. These explicitly correlated methods are found to agree in molecular as well as periodic systems. The best estimate of the water/h-BN adsorption energy is $-107\pm7$ meV from FNQMC. In addition, the water adsorption energy on the BN substrates could be expected to grow monotonically with the size of the substrate due to increased dispersion interactions but interestingly, this is not the case here. This peculiar finding is explained using the static polarizabilities and molecular dispersion coefficients of the systems, as computed from time-dependent density functional theory (DFT). Dynamic as well as static polarizabilities are found to be highly anisotropic in these systems. In addition, the many-body dispersion method in DFT emerges as a particularly useful estimation of finite size effects for other expensive, many-body wavefunction based methods.

cond-mat.mtrl-sci↗

arXiv2017

Exploring water adsorption on isoelectronically doped graphene using alchemical derivatives

The design and production of novel 2-dimensional materials has seen great progress in the last decade, prompting further exploration of the chemistry of such materials. Doping and hydrogenating graphene is an experimentally realised method of changing its surface chemistry, but there is still a great deal to be understood on how doping impacts on the adsorption of molecules. Developing this understanding is key to unlocking the potential applications of these materials. High throughput screening methods can provide particularly effective ways to explore vast chemical compositions of materials. Here, alchemical derivatives are used as a method to screen the dissociative adsorption energy of water molecules on various BN doped topologies of hydrogenated graphene. The predictions from alchemical derivatives are assessed by comparison to density functional theory. This screening method is found to predict dissociative adsorption energies that span a range of more than 2 eV, with a mean absolute error $<0.1$ eV. In addition, we show that the quality of such predictions can be readily assessed by examination of the Kohn-Sham highest occupied molecular orbital in the initial states. In this way, the root mean square error in the dissociative adsorption energies of water is reduced by almost an order of magnitude (down to $\sim0.02$ eV) after filtering out poor predictions. The findings point the way towards a reliable use of first order alchemical derivatives for efficient screening procedures.

physics.chem-ph↗

arXiv2017

How strongly do hydrogen and water molecules stick to carbon nanomaterials?

The interaction strength of molecular hydrogen and water to carbon nanomaterials is relevant to, among many applications, hydrogen storage, water treatment, and water flow. However, accurate interaction energies for hydrogen and water with carbon nanotubes(CNTs) remain scarce despite the importance of having reliable benchmark data to inform experiments and to validate computational models. Here, benchmark fixed-node diffusion Monte Carlo (DMC) interaction energies are provided for hydrogen and water monomers, inside and outside a typical zigzag CNT. The DMC interaction energies provide valuable insight into molecular interactions with CNTs in general, and are also expected to be particularly relevant to gas uptake studies on CNTs. In addition, a selection of density functional theory (DFT) exchangecorrelation(xc) functionals and force field potentials that ought to be suitable for these systems, is compared. An unexpected variation is found in the performance of DFT van der Waals (vdW) models in particular. An analysis of the peculiar discrepancy between different vdW models indicates that medium-range correlation (at circa 3 to 5 Å) plays a key role inside CNTs, and is poorly predicted by some vdW models. Using accurate reference information, this work reveals which xc functionals and force fields perform well for molecules interacting with CNTs. The findings will be valuable to future work on these and related systems, that involve molecules interacting with low-dimensional systems.

cond-mat.mtrl-sci↗

arXiv2016

Water on BN doped benzene: A hard test for exchange-correlation functionals and the impact of exact exchange on weak binding

Density functional theory (DFT) studies of weakly interacting complexes have recently focused on the importance of van der Waals dispersion forces whereas, the role of exchange has received far less attention. Here, by exploiting the subtle binding between water and a boron and nitrogen doped benzene derivative (1,2-azaborine) we show how exact exchange can alter the binding conformation within a complex. Benchmark values have been calculated for three orientations of the water monomer on 1,2-azaborine from explicitly correlated quantum chemical methods, and we have also used diffusion quantum Monte Carlo. For a host of popular DFT exchange-correlation functionals we show that the lack of exact exchange leads to the wrong lowest energy orientation of water on 1,2-azaborine. As such, we suggest that a high proportion of exact exchange and the associated improvement in the electronic structure could be needed for the accurate prediction of physisorption sites on doped surfaces and in complex organic molecules. Meanwhile to predict correct absolute interaction energies an accurate description of exchange needs to be augmented by dispersion inclusive functionals, and certain non-local van der Waals functionals (optB88- and optB86b-vdW) perform very well for absolute interaction energies. Through a comparison with water on benzene and borazine (B$_3$N$_3$H$_6$) we show that these results could have implications for the interaction of water with doped graphene surfaces, and suggest a possible way of tuning the interaction energy.

physics.chem-ph↗

arXiv2016

Tuning dissociation using isoelectronically doped graphene and hexagonal boron nitride: water and other small molecules

Novel uses for 2-dimensional materials like graphene and hexagonal boron nitride (h-BN) are being frequently discovered especially for membrane and catalysis applications. Still however, a great deal remains to be understood about the interaction of environmentally and industrially elevant molecules such as water with these materials. Taking inspiration from advances in hybridising graphene and h-BN, we explore using density functional theory, the dissociation of water, hydrogen, methane, and methanol on graphene, h-BN, and their isoelectronic doped counterparts: BN doped graphene and C doped h-BN. We find that doped surfaces are considerably more reactive than their pristine counterparts and by comparing the reactivity of several small molecules we develop a general framework for dissociative adsorption. From this a particularly attractive consequence of isoelectronic doping emerges: substrates can be doped to enhance their reactivity specifically towards either polar or non-polar adsorbates. As such, these substrates are potentially viable candidates for selective catalysts and membranes, with the implication that a range of tuneable materials can be designed.

cond-mat.mtrl-sci↗

arXiv2015

Water on hexagonal boron nitride from diffusion Monte Carlo

Despite a recent flurry of experimental and simulation studies, an accurate estimate of the interaction strength of water molecules with hexagonal boron nitride is lacking. Here we report quantum Monte Carlo results for the adsorption of a water monomer on a periodic hexagonal boron nitride sheet, which yield a water monomer interaction energy of -84 +/- 5 meV. We use the results to evaluate the performance of several widely used density functional theory (DFT) exchange correlation functionals, and find that they all deviate substantially. Differences in interaction energies between different adsorption sites are however better reproduced by DFT.

cond-mat.mtrl-sci↗