arXiv subjects

Yasuho Yamashita

Publications and source records attributed to Yasuho Yamashita.

6 recordsLinked to original sources

arXiv2022

Deep learning generates custom-made logistic regression models for explaining how breast cancer subtypes are classified

Differentiating the intrinsic subtypes of breast cancer is crucial for deciding the best treatment strategy. Deep learning can predict the subtypes from genetic information more accurately than conventional statistical methods, but to date, deep learning has not been directly utilized to examine which genes are associated with which subtypes. To clarify the mechanisms embedded in the intrinsic subtypes, we developed an explainable deep learning model called a point-wise linear (PWL) model that generates a custom-made logistic regression for each patient. Logistic regression, which is familiar to both physicians and medical informatics researchers, allows us to analyze the importance of the feature variables, and the PWL model harnesses these practical abilities of logistic regression. In this study, we show that analyzing breast cancer subtypes is clinically beneficial for patients and one of the best ways to validate the capability of the PWL model. First, we trained the PWL model with RNA-seq data to predict PAM50 intrinsic subtypes and applied it to the 41/50 genes of PAM50 through the subtype prediction task. Second, we developed a deep enrichment analysis method to reveal the relationships between the PAM50 subtypes and the copy numbers of breast cancer. Our findings showed that the PWL model utilized genes relevant to the cell cycle-related pathways. These preliminary successes in breast cancer subtype analysis demonstrate the potential of our analysis strategy to clarify the mechanisms underlying breast cancer and improve overall clinical outcomes.

cs.LG↗

arXiv2018

Pole inflation in Jordan frame supergravity

We investigate inflation models in Jordan frame supergravity, in which an inflaton non-minimally couples to the scalar curvature. By imposing the condition that an inflaton would have the canonical kinetic term in the Jordan frame, we construct inflation models with asymptotically flat potential through pole inflation technique and discuss their relation to the models based on Einstein frame supergravity. We also show that the model proposed by Ferrara et al. has special position and the relation between the Kähler potential and the frame function is uniquely determined by requiring that scalars take the canonical kinetic terms in the Jordan frame and that a frame function consists only of a holomorphic term (and its anti-holomorphic counterpart) for symmetry breaking terms. Our case corresponds to relaxing the latter condition.

hep-th↗

arXiv2016

Constraint on ghost-free bigravity from gravitational Cherenkov radiation

We investigate gravitational Cherenkov radiation in a healthy branch of background solutions in the ghost-free bigravity model. In this model, because of the modification of dispersion relations, each polarization mode can possess subluminal phase velocities, and the gravitational Cherenkov radiation could be potentially emitted from a relativistic particle. In the present paper, we derive conditions for the process of the gravitational Cherenkov radiation to occur and estimate the energy emission rate for each polarization mode. We found that the gravitational Cherenkov radiation emitted even from an ultrahigh energy cosmic ray is sufficiently suppressed for the graviton's effective mass less than $100\,{\rm eV}$, and the bigravity model with dark matter coupled to the hidden metric is therefore consistent with observations of high energy cosmic rays.

gr-qc↗

arXiv2016

Bigravity from gradient expansion

We discuss how the ghost-free bigravity coupled with a single scalar field can be derived from a braneworld setup. We consider DGP two-brane model without radion stabilization. The bulk configuration is solved for given boundary metrics, and it is substituted back into the action to obtain the effective four-dimensional action. In order to obtain the ghost-free bigravity, we consider the gradient expansion in which the brane separation is supposed to be sufficiently small so that two boundary metrics are almost identical. The obtained effective theory is shown to be ghost free as expected, however, the interaction between two gravitons takes the Fierz-Pauli form at the leading order of the gradient expansion, even though we do not use the approximation of linear perturbation. We also find that the radion remains as a scalar field in the four-dimensional effective theory, but its coupling to the metrics is non-trivial.

hep-th↗

arXiv2015

Appearance of Boulware-Deser ghost in bigravity with doubly coupled matter

We discuss the ghost freeness in the case when we add matter coupled to two metrics to the ghost-free bigravity. In this paper we show that the Boulware-Deser ghost generally revives in the presence of doubly coupled matter and that ghost freeness strongly restricts the model of kinetically doubly coupled matter. This result may anticipate difficulties in the attempt to derive the ghost-free bigravity as a low-energy effective theory, starting with a model applicable at high energies.

hep-th↗

arXiv2014

Mapping de Rham-Gabadadze-Tolley bigravity into braneworld setup

We discuss whether or not bigravity theory can be embedded into the braneworld setup. As a candidate, we consider Dvali-Gabadadze-Porrati two-brane model with the Goldberger-Wise radion stabilization. We will show that we can construct a ghost free model whose low energy spectrum is composed of a massless graviton and a massive graviton with a small mass. As is expected, the behavior of this effective theory is shown to be identical to de Rham-Gabadadze-Tolley bigravity. Unfortunately, this correspondence breaks down at a relatively low energy due to the limitation of the adopted stabilization mechanism.

hep-th↗