arXiv subjects

Ye Shen

Publications and source records attributed to Ye Shen.

At least 19 recordsLinked to original sources

arXiv2026

SciMIF: Understanding Multimodal Instruction Following in Scientific Domains

Understanding instruction-following capabilities in scientific domains is essential for effectively leveraging Multimodal Large Language Models (MLLMs) to advance the development of scientific fields. In this work, we introduce SciMIF, a novel benchmark designed to evaluate the capability of MLLMs in following complex scientific instructions. Specifically, based on an extensive analysis of 22 distinct tasks across 5 representative scientific disciplines, we propose a comprehensive taxonomy comprising 10 constraint groups that captures both general functional requirements and discipline-specific characteristics. Guided by this taxonomy, we develop a high-fidelity instruction injection pipeline to systematically augment existing scientific datasets. We conduct comprehensive experiments on multiple state-of-the-art closed-source and open-source MLLMs. Our findings reveal significant performance disparities across different scientific disciplines, with chemistry posing greater challenges for current MLLMs. Furthermore, we observe that increasing the model scale does not yield corresponding improvements in constraint adherence, and current models still struggle severely with fine-grained constraints and instructions requiring the deep application of disciplinary knowledge. SciMIF fills the current void in evaluating multimodal instruction adherence within scientific domains, laying a crucial foundation for future enhancements of MLLMs in rigorous scientific applications. Data and code will be released at https://github.com/shenye7436/SciMIF .

cs.AI↗

arXiv2026

General Grad-Shafranov Equation

To effectively describe the plasma with strong magnetic field, the force-free electrodynamics was introduced, within which the Grad-Shafranov equation plays the key role. The Grad-Shafranov equation governs the global structure of a electromagnetic field in equilibrium with symmetries. It is widely applicable in an amount of scenarios, such as the tokamak, the solar corona, the magnetosphere of Earth, neutron star and black hole, etc. However, in different situations, the Grad-Shafranov equation is expressed differently, and the derivations might be complicated. In this work, via the language of differential form, we provide a general expression of Grad-Shafranov equation, from which the expression in any specific situation can be quickly obtained. Additionally, we present a Lagrangian density for a scalar field whose on-shell condition is precisely the Grad-Shafranov equation.

gr-qc↗

arXiv2026

UniDial-EvalKit: A Unified Toolkit for Evaluating Multi-Faceted Conversational Abilities

Benchmarking large language models (LLMs) and agents in multi-turn interactive scenarios is essential for understanding their practical capabilities. However, existing evaluation protocols are highly heterogeneous, differing significantly in dataset formats, model interfaces, and evaluation pipelines, which severely impedes systematic comparison. In this work, we present UniDial-EvalKit (UDE), a unified evaluation toolkit for assessing interactive AI systems. The core contribution of UDE lies in its holistic unification: it standardizes heterogeneous data formats into a universal schema, streamlines complex evaluation pipelines through a modular architecture, and aligns metric calculations under a hierarchical scoring aggregation. It also supports efficient large-scale evaluation through parallel generation and scoring, as well as checkpoint resume to eliminate redundant computation. Leveraging UDE, we conduct an extensive evaluation across diverse multi-dimensional benchmarks. Our empirical analysis shows that no single system consistently outperforms others across all benchmarks, while current memory agents often fail to surpass full-context baselines. Further analyses highlight several future directions, including benchmark deduplication and more adaptive memory architectures.

cs.CL↗

arXiv2026

Bridging the Skill Gap in Clinical CBCT Interpretation with CBCTRepD

Generative AI has advanced rapidly in medical report generation; however, its application to oral and maxillofacial CBCT reporting remains limited, largely because of the scarcity of high-quality paired CBCT-report data and the intrinsic complexity of volumetric CBCT interpretation. To address this, we introduce CBCTRepD, a bilingual oral and maxillofacial CBCT report-generation system designed for integration into routine radiologist-AI co-authoring workflows. We curated a large-scale, high-quality paired CBCT-report dataset comprising approximately 7,408 studies, covering 55 oral disease entities across diverse acquisition settings, and used it to develop the system. We further established a clinically grounded, multi-level evaluation framework that assesses both direct AI-generated drafts and radiologist-edited collaboration reports using automatic metrics together with radiologist- and clinician-centered evaluation. Using this framework, we show that CBCTRepD achieves superior report-generation performance and produces drafts with writing quality and standardization comparable to those of intermediate radiologists. More importantly, in radiologist-AI collaboration, CBCTRepD provides consistent and clinically meaningful benefits across experience levels: it helps novice radiologists improve toward intermediate-level reporting, enables intermediate radiologists to approach senior-level performance, and even assists senior radiologists by reducing omission-related errors, including clinically important missed lesions. By improving report structure, reducing omissions, and promoting attention to co-existing lesions across anatomical regions, CBCTRepD shows strong and reliable potential as a practical assistant for real-world CBCT reporting across multi-level care settings.

cs.CV↗

arXiv2026

SIQA: Toward Reliable Scientific Image Quality Assessment

Scientific images fundamentally differ from natural and AI-generated images in that they encode structured domain knowledge rather than merely depict visual scenes. Assessing their quality therefore requires evaluating not only perceptual fidelity but also scientific correctness and logical completeness. However, existing image quality assessment (IQA) paradigms primarily focus on perceptual distortions or image-text alignment, implicitly assuming that depicted content is factually valid. This assumption breaks down in scientific contexts, where visually plausible figures may still contain conceptual errors or incomplete reasoning. To address this gap, we introduce Scientific Image Quality Assessment (SIQA), a framework that models scientific image quality along two complementary dimensions: Knowledge (Scientific Validity and Scientific Completeness) and Perception (Cognitive Clarity and Disciplinary Conformity). To operationalize this formulation, we design two evaluation protocols: SIQA-U (Understanding), which measures semantic comprehension of scientific content through multiple-choice tasks, and SIQA-S (Scoring), which evaluates alignment with expert quality judgments. We further construct the SIQA Challenge, consisting of an expert-annotated benchmark and a large-scale training set. Experiments across representative multimodal large language models (MLLMs) reveal a consistent discrepancy between scoring alignment and scientific understanding. While models can achieve strong agreement with expert ratings under SIQA-S, their performance on SIQA-U remains substantially lower. Fine-tuning improves both metrics, yet gains in scoring consistently outpace improvements in understanding. These results suggest that rating consistency alone may not reliably reflect scientific comprehension, underscoring the necessity of multidimensional evaluation for scientific image quality assessment.

cs.CV↗

arXiv2026

EvolMem: A Cognitive-Driven Benchmark for Multi-Session Dialogue Memory

Despite recent advances in understanding and leveraging long-range conversational memory, existing benchmarks still lack systematic evaluation of large language models(LLMs) across diverse memory dimensions, particularly in multi-session settings. In this work, we propose EvolMem, a new benchmark for assessing multi-session memory capabilities of LLMs and agent systems. EvolMem is grounded in cognitive psychology and encompasses both declarative and non-declarative memory, further decomposed into multiple fine-grained abilities. To construct the benchmark, we introduce a hybrid data synthesis framework that consists of topic-initiated generation and narrative-inspired transformations. This framework enables scalable generation of multi-session conversations with controllable complexity, accompanied by sample-specific evaluation guidelines. Extensive evaluation reveals that no LLM consistently outperforms others across all memory dimensions. Moreover, agent memory mechanisms do not necessarily enhance LLMs' capabilities and often exhibit notable efficiency limitations. Data and code will be released at https://github.com/shenye7436/EvolMem.

cs.CL↗

arXiv2025

Coexistence of near-EF van Hove singularity and in-gap topological Dirac surface states in superconducting electrides

Superconducting electrides have attracted growing attention for their potential to achieve high superconducting transition temperatures (TC) under pressure. However, many known electrides are chemically reactive and unstable, making high-quality single-crystal growth, characterization, and measurements difficult, and most do not exhibit superconductivity at ambient pressure. In contrast, La3In stands out for its ambient-pressure superconductivity (TC ~ 9.4 K) and the availability of high-quality single crystals. Here, we investigate its low-energy electronic structure using angle-resolved photoemission spectroscopy and first-principles calculations. The bands near the Fermi energy are mainly derived from La 5d and In 5p orbitals. A saddle point is directly observed at the Brillouin zone (BZ) boundary, while a three-dimensional van Hove singularity crosses EF at the BZ corner. First-principles calculations further reveal topological Dirac surface states within the bulk energy gap above EF. The coexistence of a high density of states and in-gap topological surface states near EF suggests that La3In offers a promising platform for tuning superconductivity and exploring possible topological superconducting phases through doping or external pressure.

cond-mat.supr-con↗

arXiv2025

One Battle After Another: Probing LLMs' Limits on Multi-Turn Instruction Following with a Benchmark Evolving Framework

Evaluating LLMs' instruction-following ability in multi-topic dialogues is essential yet challenging. Existing benchmarks are limited to a fixed number of turns, susceptible to saturation and failing to account for users' interactive experience. In this work, we propose a novel framework featuring a three-layer tracking mechanism and a query synthesis agent to mimic sequential user behaviors. Grounded in Flow Theory, we introduce process-centric metrics and terminate a conversational evaluation only upon exhausting user patience. Leveraging this framework, we present EvolIF, an evolving benchmark covering 12 constraint groups. Our analysis reveals deficiencies in failure recovery and fine-grained instruction following, with performance stratification becoming evident as conversational depth increases. GPT-5 demonstrates the most sustained resilience, maintaining a 66.40% robustness score, outperforming Gemini-3-Pro by 5.59%, while other models lag behind. Data and code will be released at https://github.com/JiaQiSJTU/EvolIF.

cs.CL↗

arXiv2025

Energy extraction from a rotating black hole via magnetic reconnection: Bumblebee gravity

Many efforts were made in order to better understand the energy extraction via magnetic reconnection from a rotating black hole, following the work of Comisso and Asenjo in 2021. We also tried to make some progress in our previous works, in which we discussed differences between bulk plasma with different streamlines and also defined the covering factor as an internal property of an accretion system to quantify its capability on extracting energy via magnetic reconnection from its central black hole. In this study, we aim to explore this topic within the framework of a Kerr-Sen-like spacetime induced from Bumblebee gravity, which, among various alternative theories of gravity beyond pure Einstein gravity, stands out as a promising candidate for explaining certain high energy astrophysical phenomena. More specifically, we would like to analyze the influence of the rate of Lorentz symmetry breaking and the Bumblebee charge, the two additional parameters in Bumblebee gravity except for the black hole mass and spin, on the energy extraction via magnetic reconnection. By analyzing the allowed regions for energy extraction and the variations of covering factor, we find that energy extraction becomes more likely to succeed and tends to occur closer to the central region when the spacetime carries bigger rate of Lorentz symmetry breaking and Bumblebee charge. Furthermore, our results indicate that the most favorable spacetime configuration for energy extraction via magnetic reconnection, when the extractable energy of the central black hole is determined, corresponds to the scenario in which the cosmic censorship hypothesis is marginally not violated.

gr-qc↗

arXiv2025

Efficiently Learning Synthetic Control Models for High-dimensional Disaggregated Data

The Synthetic Control method (SC) has become a valuable tool for estimating causal effects. Originally designed for single-treated unit scenarios, it has recently found applications in high-dimensional disaggregated settings with multiple treated units. However, challenges in practical implementation and computational efficiency arise in such scenarios. To tackle these challenges, we propose a novel approach that integrates the Multivariate Square-root Lasso method into the synthetic control framework. We rigorously establish the estimation error bounds for fitting the Synthetic Control weights using Multivariate Square-root Lasso, accommodating high-dimensionality and time series dependencies. Additionally, we quantify the estimation error for the Average Treatment Effect on the Treated (ATT). Through simulation studies, we demonstrate that our method offers superior computational efficiency without compromising estimation accuracy. We apply our method to assess the causal impact of COVID-19 Stay-at-Home Orders on the monthly unemployment rate in the United States at the county level.

stat.ME↗

arXiv2025

Q-Mirror: Unlocking the Multi-Modal Potential of Scientific Text-Only QA Pairs

High-quality, multi-modal benchmarks are crucial for advancing scientific reasoning in large models yet their manual creation is costly and unscalable. To address this bottleneck, we explore the potential for transforming Text-Only QA Pairs (TQAs) into high-quality Multi-Modal QA Pairs (MMQAs), which include three parts: 1) Task Definition \& Evaluation Rubric: We develop a TQA-to-MMQA framework and establish a comprehensive, multi-dimensional MMQA quality rubric that provides principles for the transformation. 2) Benchmark Construction: Then we construct two extensive benchmarks to rigorously evaluate state-of-the-art generation \& understanding models on the distinct tasks of MMQA generation \& MMQA quality evaluation. 3) Preliminary Solution: We develop an agentic system (Q-Mirror), which operationalizes our framework by integrating MMQA generation and evaluation into a closed loop for iterative refinement. Our experiments show that while state-of-the-art models can generate MMQAs, their outputs still leave substantial gaps, underscoring the need for reliable evaluation. We further demonstrate that top-tier understanding models align closely with human judgment in MMQA quality assessment. Leveraging both insights, the Q-Mirror agent raises average scores from 78.90 to 85.22 and pass rates from 72\% to 95\%, offering a practical path to large-scale scientific benchmarks.

cs.CL↗

arXiv2025

QoNext: Towards Next-generation QoE for Foundation Models

Existing evaluations of foundation models predominantly focus on output correctness, treating interaction as a static exchange of information. However, such perspectives overlook the essence of the LLM-driven conversational experience, which is determined not only by content quality but, crucially, by dynamic service attributes such as generation velocity and latency patterns. To address this gap, we introduce QoNext, the first framework that adapts Quality of Experience (QoE) principles from networking and multimedia to the holistic assessment of human-AI interaction. QoNext identifies experiential factors that shape user experience and incorporates them into controlled experiments in simulated interaction scenarios, where human ratings are collected under diverse configurations. From these studies we construct the QoNext Database and train the QoNext Model, a neural predictor that estimates user experience directly from measurable system parameters. Our results demonstrate that QoNext effectively decodes the underlying mechanisms of user satisfaction and enables precise prediction of human sentiment across varied service conditions.

cs.CL↗

arXiv2025

A Multi-To-One Interview Paradigm for Efficient MLLM Evaluation

The rapid progress of Multi-Modal Large Language Models (MLLMs) has spurred the creation of numerous benchmarks. However, conventional full-coverage Question-Answering evaluations suffer from high redundancy and low efficiency. Inspired by human interview processes, we propose a multi-to-one interview paradigm for efficient MLLM evaluation. Our framework consists of (i) a two-stage interview strategy with pre-interview and formal interview phases, (ii) dynamic adjustment of interviewer weights to ensure fairness, and (iii) an adaptive mechanism for question difficulty-level chosen. Experiments on different benchmarks show that the proposed paradigm achieves significantly higher correlation with full-coverage results than random sampling, with improvements of up to 17.6% in PLCC and 16.7% in SRCC, while reducing the number of required questions. These findings demonstrate that the proposed paradigm provides a reliable and efficient alternative for large-scale MLLM benchmarking.

cs.CL↗

arXiv2025

The Ever-Evolving Science Exam

As foundation models grow rapidly in capability and deployment, evaluating their scientific understanding becomes increasingly critical. Existing science benchmarks have made progress towards broad Range, wide Reach, and high Rigor, yet they often face two major challenges: data leakage risks that compromise benchmarking validity, and evaluation inefficiency due to large-scale testing. To address these issues, we introduce the Ever-Evolving Science Exam (EESE), a dynamic benchmark designed to reliably assess scientific capabilities in foundation models. Our approach consists of two components: 1) a non-public EESE-Pool with over 100K expertly constructed science instances (question-answer pairs) across 5 disciplines and 500+ subfields, built through a multi-stage pipeline ensuring Range, Reach, and Rigor, 2) a periodically updated 500-instance subset EESE, sampled and validated to enable leakage-resilient, low-overhead evaluations. Experiments on 32 open- and closed-source models demonstrate that EESE effectively differentiates the strengths and weaknesses of models in scientific fields and cognitive dimensions. Overall, EESE provides a robust, scalable, and forward-compatible solution for science benchmark design, offering a realistic measure of how well foundation models handle science questions. The project page is at: https://github.com/aiben-ch/EESE.

cs.CL↗

arXiv2025

When Life Gives You Samples: The Benefits of Scaling up Inference Compute for Multilingual LLMs

Recent advancements in large language models (LLMs) have shifted focus toward scaling inference-time compute, improving performance without retraining the model. A common approach is to sample multiple outputs in parallel, and select one of these as the final output. However, work to date has focused on English and a handful of domains such as math and code. In contrast, we are most interested in techniques that generalize across open-ended tasks, formally verifiable tasks, and across languages. In this work, we study how to robustly scale inference-time compute for open-ended generative tasks in a multilingual, multi-task setting. Our findings show that both sampling strategy based on temperature variation and selection strategy must be adapted to account for diverse domains and varied language settings. We evaluate existing selection methods, revealing that strategies effective in English often fail to generalize across languages. We propose novel sampling and selection strategies specifically adapted for multilingual and multi-task inference scenarios, and show they yield notable gains across languages and tasks. In particular, our combined sampling and selection methods lead to an average +6.8 jump in win-rates for our 8B models on m-ArenaHard-v2.0 prompts, against proprietary models such as Gemini. At larger scale, Command-A (111B model) equipped with our methods, shows +9.0 improvement in win-rates on the same benchmark with just five samples against single-sample decoding, a substantial increase at minimal cost. Our results underscore the need for language- and task-aware approaches to inference-time compute, aiming to democratize performance improvements in underrepresented languages.

cs.CL↗

arXiv2025

Improve MLLM Benchmark Efficiency through Interview

The rapid development of Multimodal Large Language Models (MLLM) has led to a wide range of MLLM applications, and a number of benchmark datasets have sprung up in order to assess MLLM abilities. However, full-coverage Q&A testing on large-scale data is resource-intensive and time-consuming. To address this issue, we propose the MLLM Interview (MITV) strategy, which aims to quickly obtain MLLM performance metrics by quizzing fewer question. First, First, we constructed the interview dataset, which was built on an existing MLLM assessment dataset, by adding difficulty labels based on the performance of some typical MLLMs in this dataset. Second, we propose an MLLM Interview strategy, which obtains an initial performance situation of the large model by quizzing a small number of topics and then continuously tries to test the model's limits. Through extensive experiments, the result shows that the MITV strategy proposed in this paper performs well on MLLM benchmark datasets, and it is able to obtain the model evaluation capability faster through a small number of questions and answers.

cs.CL↗

arXiv2025

Large Language Models for Bioinformatics

With the rapid advancements in large language model (LLM) technology and the emergence of bioinformatics-specific language models (BioLMs), there is a growing need for a comprehensive analysis of the current landscape, computational characteristics, and diverse applications. This survey aims to address this need by providing a thorough review of BioLMs, focusing on their evolution, classification, and distinguishing features, alongside a detailed examination of training methodologies, datasets, and evaluation frameworks. We explore the wide-ranging applications of BioLMs in critical areas such as disease diagnosis, drug discovery, and vaccine development, highlighting their impact and transformative potential in bioinformatics. We identify key challenges and limitations inherent in BioLMs, including data privacy and security concerns, interpretability issues, biases in training data and model outputs, and domain adaptation complexities. Finally, we highlight emerging trends and future directions, offering valuable insights to guide researchers and clinicians toward advancing BioLMs for increasingly sophisticated biological and clinical applications.

q-bio.QM↗

arXiv2024

Generally relativistic description of fast magnetic reconnection induced by thermal electromotive force

Many theoretical models were come up with to figure out the properties of magnetic reconnection process, among which the Sweet-Parker model is the most famous since it describes the magnetic reconnection in a concise way. However, the low reconnection rate expected by this model is generally not available in most astrophysical systems, which motivates people to seek fast reconnection models. Under the scheme of generalized magnetohydrodynamics (MHD) for pair plasma, a fast magnetic reconnection model was established, in which the thermal electromotive force plays a key role to remarkably increase the reconnection rate. In this work, I would like to extend the discussions in my previous work, about the generally relativistic description of Sweet-Parker model, to the description of fast magnetic reconnection induced by thermal electromotive force. I will revisit the fast reconnection model briefly to initialize my discussions and show how the thermal electromotive force impacts the reconnection rate. Next, some basic setups will be exhibited before discussing specific examples about how the properties of fast magnetic reconnection are modified by gravitational effect or in observations. Results in this work consolidate my opinion reiterated in my previous work that properties of magnetic reconnection would never be modified by gravitational effect significantly if the magnetic reconnection process occurs in a local scale while the modifications of properties could not be neglected when the process is detected by an observer who is moving with respect to the laboratory, in the rest frame of which the magnetic reconnection occurs.

physics.plasm-ph↗