arXiv subjects

Yefeng Zheng

Publications and source records attributed to Yefeng Zheng.

At least 73 records · Page 4Linked to original sources

arXiv2025

Rethinking Brain Tumor Segmentation from the Frequency Domain Perspective

Precise segmentation of brain tumors, particularly contrast-enhancing regions visible in post-contrast MRI (areas highlighted by contrast agent injection), is crucial for accurate clinical diagnosis and treatment planning but remains challenging. However, current methods exhibit notable performance degradation in segmenting these enhancing brain tumor areas, largely due to insufficient consideration of MRI-specific tumor features such as complex textures and directional variations. To address this, we propose the Harmonized Frequency Fusion Network (HFF-Net), which rethinks brain tumor segmentation from a frequency-domain perspective. To comprehensively characterize tumor regions, we develop a Frequency Domain Decomposition (FDD) module that separates MRI images into low-frequency components, capturing smooth tumor contours and high-frequency components, highlighting detailed textures and directional edges. To further enhance sensitivity to tumor boundaries, we introduce an Adaptive Laplacian Convolution (ALC) module that adaptively emphasizes critical high-frequency details using dynamically updated convolution kernels. To effectively fuse tumor features across multiple scales, we design a Frequency Domain Cross-Attention (FDCA) integrating semantic, positional, and slice-specific information. We further validate and interpret frequency-domain improvements through visualization, theoretical reasoning, and experimental analyses. Extensive experiments on four public datasets demonstrate that HFF-Net achieves an average relative improvement of 4.48\% (ranging from 2.39\% to 7.72\%) in the mean Dice scores across the three major subregions, and an average relative improvement of 7.33% (ranging from 5.96% to 8.64%) in the segmentation of contrast-enhancing tumor regions, while maintaining favorable computational efficiency and clinical applicability. Code: https://github.com/VinyehShaw/HFF.

eess.IV↗

arXiv2025

AutoPal: Autonomous Adaptation to Users for Personal AI Companionship

Previous research has demonstrated the potential of AI agents to act as companions that can provide constant emotional support for humans. In this paper, we emphasize the necessity of autonomous adaptation in personal AI companionship, an underexplored yet promising direction. Such adaptability is crucial as it can facilitate more tailored interactions with users and allow the agent to evolve in response to users' changing needs. However, imbuing agents with autonomous adaptability presents unique challenges, including identifying optimal adaptations to meet users' expectations and ensuring a smooth transition during the adaptation process. To address them, we devise a hierarchical framework, AutoPal, that enables controllable and authentic adjustments to the agent's persona based on user interactions. A personamatching dataset is constructed to facilitate the learning of optimal persona adaptations. Extensive experiments demonstrate the effectiveness of AutoPal and highlight the importance of autonomous adaptability in AI companionship.

cs.CL↗

arXiv2025

Sliding Window Attention Training for Efficient Large Language Models

Recent advances in transformer-based Large Language Models (LLMs) have demonstrated remarkable capabilities across various tasks. However, their quadratic computational complexity concerning sequence length remains a significant bottleneck for processing long documents. As a result, many efforts like sparse attention and state space models have been proposed to improve the efficiency of LLMs over long sequences. Though effective, these approaches compromise the performance or introduce structural complexity. This calls for a simple yet efficient model that preserves the fundamental Transformer architecture. To this end, we introduce SWAT, which enables efficient long-context handling via Sliding Window Attention Training. This paper first attributes the inefficiency of Transformers to the attention sink phenomenon resulting from the high variance of softmax operation. Then, we replace softmax with the sigmoid function and utilize a balanced ALiBi and Rotary Position Embedding for efficient information compression and retention. Experiments demonstrate that SWAT achieves SOTA performance compared with state-of-the-art linear recurrent architectures on eight benchmarks. Code is available at https://github.com/Fzkuji/swat-attention.

cs.CL↗

arXiv2025

T$^2$: An Adaptive Test-Time Scaling Strategy for Contextual Question Answering

Recent advances in Large Language Models (LLMs) have demonstrated remarkable performance in Contextual Question Answering (CQA). However, prior approaches typically employ elaborate reasoning strategies regardless of question complexity, leading to low adaptability. Recent efficient test-time scaling methods introduce budget constraints or early stop mechanisms to avoid overthinking for straightforward questions. But they add human bias to the reasoning process and fail to leverage models' inherent reasoning capabilities. To address these limitations, we present T$^2$: Think-to-Think, a novel framework that dynamically adapts reasoning depth based on question complexity. T$^2$ leverages the insight that if an LLM can effectively solve similar questions using specific reasoning strategies, it can apply the same strategy to the original question. This insight enables to adoption of concise reasoning for straightforward questions while maintaining detailed analysis for complex problems. T$^2$ works through four key steps: decomposing questions into structural elements, generating similar examples with candidate reasoning strategies, evaluating these strategies against multiple criteria, and applying the most appropriate strategy to the original question. Experimental evaluation across seven diverse CQA benchmarks demonstrates that T$^2$ not only achieves higher accuracy than baseline methods but also reduces computational overhead by up to 25.2\%.

cs.CL↗

arXiv2025

MemeReaCon: Probing Contextual Meme Understanding in Large Vision-Language Models

Memes have emerged as a popular form of multimodal online communication, where their interpretation heavily depends on the specific context in which they appear. Current approaches predominantly focus on isolated meme analysis, either for harmful content detection or standalone interpretation, overlooking a fundamental challenge: the same meme can express different intents depending on its conversational context. This oversight creates an evaluation gap: although humans intuitively recognize how context shapes meme interpretation, Large Vision Language Models (LVLMs) can hardly understand context-dependent meme intent. To address this critical limitation, we introduce MemeReaCon, a novel benchmark specifically designed to evaluate how LVLMs understand memes in their original context. We collected memes from five different Reddit communities, keeping each meme's image, the post text, and user comments together. We carefully labeled how the text and meme work together, what the poster intended, how the meme is structured, and how the community responded. Our tests with leading LVLMs show a clear weakness: models either fail to interpret critical information in the contexts, or overly focus on visual details while overlooking communicative purpose. MemeReaCon thus serves both as a diagnostic tool exposing current limitations and as a challenging benchmark to drive development toward more sophisticated LVLMs of the context-aware understanding.

cs.AI↗

arXiv2025

The Butterfly Effect in Pathology: Exploring Security in Pathology Foundation Models

With the widespread adoption of pathology foundation models in both research and clinical decision support systems, exploring their security has become a critical concern. However, despite their growing impact, the vulnerability of these models to adversarial attacks remains largely unexplored. In this work, we present the first systematic investigation into the security of pathology foundation models for whole slide image~(WSI) analysis against adversarial attacks. Specifically, we introduce the principle of \textit{local perturbation with global impact} and propose a label-free attack framework that operates without requiring access to downstream task labels. Under this attack framework, we revise four classical white-box attack methods and redefine the perturbation budget based on the characteristics of WSI. We conduct comprehensive experiments on three representative pathology foundation models across five datasets and six downstream tasks. Despite modifying only 0.1\% of patches per slide with imperceptible noise, our attack leads to downstream accuracy degradation that can reach up to 20\% in the worst cases. Furthermore, we analyze key factors that influence attack success, explore the relationship between patch-level vulnerability and semantic content, and conduct a preliminary investigation into potential defence strategies. These findings lay the groundwork for future research on the adversarial robustness and reliable deployment of pathology foundation models. Our code is publicly available at: https://github.com/Jiashuai-Liu-hmos/Attack-WSI-pathology-foundation-models.

cs.CV↗

arXiv2025

Progressive Language-guided Visual Learning for Multi-Task Visual Grounding

Multi-task visual grounding (MTVG) includes two sub-tasks, i.e., Referring Expression Comprehension (REC) and Referring Expression Segmentation (RES). The existing representative approaches generally follow the research pipeline which mainly consists of three core procedures, including independent feature extraction for visual and linguistic modalities, respectively, cross-modal interaction module, and independent prediction heads for different sub-tasks. Albeit achieving remarkable performance, this research line has two limitations: 1) The linguistic content has not been fully injected into the entire visual backbone for boosting more effective visual feature extraction and it needs an extra cross-modal interaction module; 2) The relationship between REC and RES tasks is not effectively exploited to help the collaborative prediction for more accurate output. To deal with these problems, in this paper, we propose a Progressive Language-guided Visual Learning framework for multi-task visual grounding, called PLVL, which not only finely mine the inherent feature expression of the visual modality itself but also progressively inject the language information to help learn linguistic-related visual features. In this manner, our PLVL does not need additional cross-modal fusion module while fully introducing the language guidance. Furthermore, we analyze that the localization center for REC would help identify the to-be-segmented object region for RES to some extent. Inspired by this investigation, we design a multi-task head to accomplish collaborative predictions for these two sub-tasks. Extensive experiments conducted on several benchmark datasets comprehensively substantiate that our PLVL obviously outperforms the representative methods in both REC and RES tasks. https://github.com/jcwang0602/PLVL

cs.CV↗

arXiv2025

Think or Not? Exploring Thinking Efficiency in Large Reasoning Models via an Information-Theoretic Lens

The recent rise of Large Reasoning Models (LRMs) has significantly improved multi-step reasoning performance, but often at the cost of generating excessively long reasoning chains. This paper revisits the efficiency of such reasoning processes through an information-theoretic lens, revealing a fundamental trade-off between reasoning length and semantic efficiency. We propose two metrics, InfoBias and InfoGain, to quantify divergence from ideal reasoning paths and stepwise information contribution, respectively. Empirical analyses show that longer reasoning chains tend to exhibit higher information bias and diminishing information gain, especially for incorrect answers. Motivated by these findings, we introduce an entropy-based Adaptive Think strategy that dynamically halts reasoning once confidence is sufficiently high, improving efficiency while maintaining competitive accuracy. Compared to the Vanilla Think approach (default mode), our strategy yields a 1.10% improvement in average accuracy and a 50.80% reduction in token usage on QwQ-32B across six benchmark tasks spanning diverse reasoning types and difficulty levels, demonstrating superior efficiency and reasoning performance. These results underscore the promise of entropy-based methods for enhancing both accuracy and cost-effiiciency in large language model deployment.

cs.CL↗

arXiv2025

CellVerse: Do Large Language Models Really Understand Cell Biology?

Recent studies have demonstrated the feasibility of modeling single-cell data as natural languages and the potential of leveraging powerful large language models (LLMs) for understanding cell biology. However, a comprehensive evaluation of LLMs' performance on language-driven single-cell analysis tasks still remains unexplored. Motivated by this challenge, we introduce CellVerse, a unified language-centric question-answering benchmark that integrates four types of single-cell multi-omics data and encompasses three hierarchical levels of single-cell analysis tasks: cell type annotation (cell-level), drug response prediction (drug-level), and perturbation analysis (gene-level). Going beyond this, we systematically evaluate the performance across 14 open-source and closed-source LLMs ranging from 160M to 671B on CellVerse. Remarkably, the experimental results reveal: (1) Existing specialist models (C2S-Pythia) fail to make reasonable decisions across all sub-tasks within CellVerse, while generalist models such as Qwen, Llama, GPT, and DeepSeek family models exhibit preliminary understanding capabilities within the realm of cell biology. (2) The performance of current LLMs falls short of expectations and has substantial room for improvement. Notably, in the widely studied drug response prediction task, none of the evaluated LLMs demonstrate significant performance improvement over random guessing. CellVerse offers the first large-scale empirical demonstration that significant challenges still remain in applying LLMs to cell biology. By introducing CellVerse, we lay the foundation for advancing cell biology through natural languages and hope this paradigm could facilitate next-generation single-cell analysis.

q-bio.QM↗

arXiv2025

An Explainable Biomedical Foundation Model via Large-Scale Concept-Enhanced Vision-Language Pre-training

The clinical adoption of artificial intelligence (AI) in medical imaging requires models that are both diagnostically accurate and interpretable to clinicians. While current multimodal biomedical foundation models prioritize performance, their black-box nature hinders explaining the decision-making process in clinically meaningful concepts. Here, we present ConceptCLIP, the first explainable biomedical foundation model that achieves state-of-the-art diagnostic accuracy while delivering human-interpretable explanations across diverse imaging modalities. We curate MedConcept-23M, the largest pre-training dataset comprising 23 million image-text-concept triplets across diverse medical modalities, where clinical concepts are derived from the Unified Medical Language System. Leveraging this dataset, we develop ConceptCLIP through a novel dual-alignment approach that simultaneously learns global image-text representations and fine-grained region-concept associations for precise and interpretable medical image analysis. We curate the most extensive evaluation benchmark for multimodal biomedical foundation models, covering 52 clinical tasks spanning 10 imaging modalities. Extensive experiments demonstrate that ConceptCLIP outperforms existing state-of-the-art multimodal biomedical foundation models. Importantly, ConceptCLIP demonstrates superior diagnostic performance while providing human-understandable explanations validated by clinical experts. As the first precise and interpretable biomedical foundation model, ConceptCLIP represents a critical milestone toward the widespread clinical adoption of AI, thereby advancing trustworthy AI in medicine.

cs.CV↗

arXiv2025

NTIRE 2025 Challenge on Day and Night Raindrop Removal for Dual-Focused Images: Methods and Results

This paper reviews the NTIRE 2025 Challenge on Day and Night Raindrop Removal for Dual-Focused Images. This challenge received a wide range of impressive solutions, which are developed and evaluated using our collected real-world Raindrop Clarity dataset. Unlike existing deraining datasets, our Raindrop Clarity dataset is more diverse and challenging in degradation types and contents, which includes day raindrop-focused, day background-focused, night raindrop-focused, and night background-focused degradations. This dataset is divided into three subsets for competition: 14,139 images for training, 240 images for validation, and 731 images for testing. The primary objective of this challenge is to establish a new and powerful benchmark for the task of removing raindrops under varying lighting and focus conditions. There are a total of 361 participants in the competition, and 32 teams submitting valid solutions and fact sheets for the final testing phase. These submissions achieved state-of-the-art (SOTA) performance on the Raindrop Clarity dataset. The project can be found at https://lixinustc.github.io/CVPR-NTIRE2025-RainDrop-Competition.github.io/.

cs.CV↗

arXiv2025

ViLa-MIL: Dual-scale Vision-Language Multiple Instance Learning for Whole Slide Image Classification

Multiple instance learning (MIL)-based framework has become the mainstream for processing the whole slide image (WSI) with giga-pixel size and hierarchical image context in digital pathology. However, these methods heavily depend on a substantial number of bag-level labels and solely learn from the original slides, which are easily affected by variations in data distribution. Recently, vision language model (VLM)-based methods introduced the language prior by pre-training on large-scale pathological image-text pairs. However, the previous text prompt lacks the consideration of pathological prior knowledge, therefore does not substantially boost the model's performance. Moreover, the collection of such pairs and the pre-training process are very time-consuming and source-intensive.To solve the above problems, we propose a dual-scale vision-language multiple instance learning (ViLa-MIL) framework for whole slide image classification. Specifically, we propose a dual-scale visual descriptive text prompt based on the frozen large language model (LLM) to boost the performance of VLM effectively. To transfer the VLM to process WSI efficiently, for the image branch, we propose a prototype-guided patch decoder to aggregate the patch features progressively by grouping similar patches into the same prototype; for the text branch, we introduce a context-guided text decoder to enhance the text features by incorporating the multi-granular image contexts. Extensive studies on three multi-cancer and multi-center subtyping datasets demonstrate the superiority of ViLa-MIL.

cs.CV↗

arXiv2025

A Refreshed Similarity-based Upsampler for Direct High-Ratio Feature Upsampling

Feature upsampling is a fundamental and indispensable ingredient of almost all current network structures for dense prediction tasks. Recently, a popular similarity-based feature upsampling pipeline has been proposed, which utilizes a high-resolution feature as guidance to help upsample the low-resolution deep feature based on their local similarity. Albeit achieving promising performance, this pipeline has specific limitations: 1) HR query and LR key features are not well aligned; 2) the similarity between query-key features is computed based on the fixed inner product form; 3) neighbor selection is coarsely operated on LR features, resulting in mosaic artifacts. These shortcomings make the existing methods along this pipeline primarily applicable to hierarchical network architectures with iterative features as guidance and they are not readily extended to a broader range of structures, especially for a direct high-ratio upsampling. Against the issues, we meticulously optimize every methodological design. Specifically, we firstly propose an explicitly controllable query-key feature alignment from both semantic-aware and detail-aware perspectives, and then construct a parameterized paired central difference convolution block for flexibly calculating the similarity between the well-aligned query-key features. Besides, we develop a fine-grained neighbor selection strategy on HR features, which is simple yet effective for alleviating mosaic artifacts. Based on these careful designs, we systematically construct a refreshed similarity-based feature upsampling framework named ReSFU. Extensive experiments substantiate that our proposed ReSFU is finely applicable to various types of architectures in a direct high-ratio upsampling manner, and consistently achieves satisfactory performance on different dense prediction applications, showing superior generality and ease of deployment.

cs.CV↗

arXiv2025

Large Language Model Distilling Medication Recommendation Model

The recommendation of medication is a vital aspect of intelligent healthcare systems, as it involves prescribing the most suitable drugs based on a patient's specific health needs. Unfortunately, many sophisticated models currently in use tend to overlook the nuanced semantics of medical data, while only relying heavily on identities. Furthermore, these models face significant challenges in handling cases involving patients who are visiting the hospital for the first time, as they lack prior prescription histories to draw upon. To tackle these issues, we harness the powerful semantic comprehension and input-agnostic characteristics of Large Language Models (LLMs). Our research aims to transform existing medication recommendation methodologies using LLMs. In this paper, we introduce a novel approach called Large Language Model Distilling Medication Recommendation (LEADER). We begin by creating appropriate prompt templates that enable LLMs to suggest medications effectively. However, the straightforward integration of LLMs into recommender systems leads to an out-of-corpus issue specific to drugs. We handle it by adapting the LLMs with a novel output layer and a refined tuning loss function. Although LLM-based models exhibit remarkable capabilities, they are plagued by high computational costs during inference, which is impractical for the healthcare sector. To mitigate this, we have developed a feature-level knowledge distillation technique, which transfers the LLM's proficiency to a more compact model. Extensive experiments conducted on two real-world datasets, MIMIC-III and MIMIC-IV, demonstrate that our proposed model not only delivers effective results but also is efficient. To ease the reproducibility of our experiments, we release the implementation code online.

cs.IR↗

arXiv2025

SP-SLAM: Neural Real-Time Dense SLAM With Scene Priors

Neural implicit representations have recently shown promising progress in dense Simultaneous Localization And Mapping (SLAM). However, existing works have shortcomings in terms of reconstruction quality and real-time performance, mainly due to inflexible scene representation strategy without leveraging any prior information. In this paper, we introduce SP-SLAM, a novel neural RGB-D SLAM system that performs tracking and mapping in real-time. SP-SLAM computes depth images and establishes sparse voxel-encoded scene priors near the surfaces to achieve rapid convergence of the model. Subsequently, the encoding voxels computed from single-frame depth image are fused into a global volume, which facilitates high-fidelity surface reconstruction. Simultaneously, we employ tri-planes to store scene appearance information, striking a balance between achieving high-quality geometric texture mapping and minimizing memory consumption. Furthermore, in SP-SLAM, we introduce an effective optimization strategy for mapping, allowing the system to continuously optimize the poses of all historical input frames during runtime without increasing computational overhead. We conduct extensive evaluations on five benchmark datasets (Replica, ScanNet, TUM RGB-D, Synthetic RGB-D, 7-Scenes). The results demonstrate that, compared to existing methods, we achieve superior tracking accuracy and reconstruction quality, while running at a significantly faster speed.

cs.CV↗

arXiv2024

Semi-supervised Credit Card Fraud Detection via Attribute-Driven Graph Representation

Credit card fraud incurs a considerable cost for both cardholders and issuing banks. Contemporary methods apply machine learning-based classifiers to detect fraudulent behavior from labeled transaction records. But labeled data are usually a small proportion of billions of real transactions due to expensive labeling costs, which implies that they do not well exploit many natural features from unlabeled data. Therefore, we propose a semi-supervised graph neural network for fraud detection. Specifically, we leverage transaction records to construct a temporal transaction graph, which is composed of temporal transactions (nodes) and interactions (edges) among them. Then we pass messages among the nodes through a Gated Temporal Attention Network (GTAN) to learn the transaction representation. We further model the fraud patterns through risk propagation among transactions. The extensive experiments are conducted on a real-world transaction dataset and two publicly available fraud detection datasets. The result shows that our proposed method, namely GTAN, outperforms other state-of-the-art baselines on three fraud detection datasets. Semi-supervised experiments demonstrate the excellent fraud detection performance of our model with only a tiny proportion of labeled data.

cs.LG↗

arXiv2024

URoadNet: Dual Sparse Attentive U-Net for Multiscale Road Network Extraction

The challenges of road network segmentation demand an algorithm capable of adapting to the sparse and irregular shapes, as well as the diverse context, which often leads traditional encoding-decoding methods and simple Transformer embeddings to failure. We introduce a computationally efficient and powerful framework for elegant road-aware segmentation. Our method, called URoadNet, effectively encodes fine-grained local road connectivity and holistic global topological semantics while decoding multiscale road network information. URoadNet offers a novel alternative to the U-Net architecture by integrating connectivity attention, which can exploit intra-road interactions across multi-level sampling features with reduced computational complexity. This local interaction serves as valuable prior information for learning global interactions between road networks and the background through another integrality attention mechanism. The two forms of sparse attention are arranged alternatively and complementarily, and trained jointly, resulting in performance improvements without significant increases in computational complexity. Extensive experiments on various datasets with different resolutions, including Massachusetts, DeepGlobe, SpaceNet, and Large-Scale remote sensing images, demonstrate that URoadNet outperforms state-of-the-art techniques. Our approach represents a significant advancement in the field of road network extraction, providing a computationally feasible solution that achieves high-quality segmentation results.

cs.CV↗

arXiv2024

LLMEmb: Large Language Model Can Be a Good Embedding Generator for Sequential Recommendation

Sequential Recommender Systems (SRS), which model a user's interaction history to predict the next item of interest, are widely used in various applications. However, existing SRS often struggle with low-popularity items, a challenge known as the long-tail problem. This issue leads to reduced serendipity for users and diminished profits for sellers, ultimately harming the overall system. Large Language Model (LLM) has the ability to capture semantic relationships between items, independent of their popularity, making it a promising solution to this problem. In this paper, we introduce LLMEmb, a novel method leveraging LLM to generate item embeddings that enhance SRS performance. To bridge the gap between general-purpose LLM and the recommendation domain, we propose a Supervised Contrastive Fine-Tuning (SCFT) approach. This approach includes attribute-level data augmentation and a tailored contrastive loss to make LLM more recommendation-friendly. Additionally, we emphasize the importance of integrating collaborative signals into LLM-generated embeddings, for which we propose Recommendation Adaptation Training (RAT). This further refines the embeddings for optimal use in SRS. The LLMEmb-derived embeddings can be seamlessly integrated with any SRS models, underscoring the practical value. Comprehensive experiments conducted on three real-world datasets demonstrate that LLMEmb significantly outperforms existing methods across multiple SRS models. The code for our method is released online https://github.com/Applied-Machine-Learning-Lab/LLMEmb.

cs.IR↗