arXiv subjects

Yeye He

Publications and source records attributed to Yeye He.

At least 19 recordsLinked to original sources

arXiv2026

Auto-Fill: Learning to Predict Missing Values Accurately with Specialist Language Models

Predicting missing cell values in tabular data is a fundamental problem in data cleaning. While state-of-the-art reasoning models show great promise in predicting missing values in tables, by reasoning holistically across rows and columns, they are costly to deploy at scale and tend to be overconfident, often generating hallucinated or false-positive predictions. In this paper, we observe that achieving high-precision missing-value prediction in tables requires a distinct combination of three capabilities: (1) world knowledge, (2) text-based reasoning, and (3) code-based reasoning. We systematically explore design choices for combining these capabilities, and propose an Auto-Fill approach that post-trains three specialist small language models (SLMs), each optimized for one capability. We develop a calibrated ensemble mechanism that either dynamically selects the most confident specialist or abstains, ensuring high accuracy. Extensive experiments on 11 benchmarks with 2200 real tables drawn from diverse domains show that Auto-Fill achieves superior accuracy compared to state-of-the-art reasoning models (e.g., o3-pro, Gemini 3 Pro, and DeepSeek R1), while operating at a fraction (less than 1%) of the cost of these frontier models. Our results highlight the effectiveness of specialization and calibrated abstention in the important domain of tabular data. Auto-Fill is publicly available at https://github.com/lyrain2001/auto-fill.

cs.LG↗

arXiv2026

Auto-Relate: A Unified Approach to Discovering Reliable Functional Relationships Leveraging Statistical Tests

Tables in spreadsheets, computational notebooks, and databases often contain rich inter-column relationships. Yet these relationships are typically implicit and are often lost when tables are exported to standard formats. Recovering them can benefit downstream tasks, including table understanding, data quality improvement, and provenance analysis. However, simply mining relationships that hold on an observed table is insufficient, as many are spurious due to coincidence, redundancy, or limited data diversity. In this paper, we introduce functional relationships (FRs) as a unified notion for inter-column relationships in tables, subsuming arithmetic relationships, string transformations, and functional dependencies. We characterize FR reliability through four complementary criteria: accuracy, atomicity, stability, and integrity. Guided by these criteria, we propose Auto-Relate, a mine-then-verify framework that first generates accurate candidate FRs and then verifies the remaining reliability criteria through a Minimality Test, a Perturbation Test, and an Independence Test, respectively. To further improve efficiency, we develop three optimization strategies, including a group-by lower bound for early rejection, a closed-form speedup for arithmetic FRs, and a binomial bound for statistically guided early termination. We construct a large-scale benchmark suite from 58,679 real-world spreadsheets and relational tables, containing 6,414 ground-truth FRs spanning all three FR types. Extensive experiments against 18 baselines show that Auto-Relate consistently achieves the best performance, with an average PR-AUC of 0.87, 59% higher than the best competing baseline across all settings.

cs.DB↗

arXiv2026

The Price Reversal Phenomenon: When Cheaper Reasoning Models Cost More

Developers and consumers increasingly choose reasoning models (RMs) based on their listed API prices. However, how accurately do these prices reflect actual inference costs? We conduct the first systematic study of this question, evaluating 8 frontier RMs across 12 diverse tasks covering competition math, science QA, code generation, and multi-domain agents. We uncover the pricing reversal phenomenon: in 32% of model-pair comparisons, the model with a lower listed price actually incurs a higher total cost, with reversal magnitude reaching up to 28x. For example, Gemini 3 Flash's listed price is 80% cheaper than GPT-5.4's, yet its actual cost across all tasks is 38% higher. We build a formal cost attribution framework based on Shapley value, and leverage it to trace the dominating contributors to vast heterogeneity in thinking token consumption and number of interaction turns: on the same query, one model may use 900% more thinking tokens than another, or 10x more turns of environment interactions. We further show that per-query cost prediction is fundamentally difficult: repeated runs of the same query yield thinking token variation up to 9.7x, establishing an irreducible noise floor for any predictor. Thus, we propose cost distribution prediction as an open challenge. Our findings demonstrate that listed API pricing is an unreliable proxy for actual cost, calling for cost-aware model selection and transparent per-request cost monitoring.

cs.CL↗

arXiv2026

MoDora: Tree-Based Semi-Structured Document Analysis System

Semi-structured documents integrate diverse interleaved data elements (e.g., tables, charts, hierarchical paragraphs) arranged in various and often irregular layouts. These documents are widely observed across domains and account for a large portion of real-world data. However, existing methods struggle to support natural language question answering over these documents due to three main technical challenges: (1) The elements extracted by techniques like OCR are often fragmented and stripped of their original semantic context, making them inadequate for analysis. (2) Existing approaches lack effective representations to capture hierarchical structures within documents (e.g., associating tables with nested chapter titles) and to preserve layout-specific distinctions (e.g., differentiating sidebars from main content). (3) Answering questions often requires retrieving and aligning relevant information scattered across multiple regions or pages, such as linking a descriptive paragraph to table cells located elsewhere in the document. To address these issues, we propose MoDora, an LLM-powered system for semi-structured document analysis. First, we adopt a local-alignment aggregation strategy to convert OCR-parsed elements into layout-aware components, and conduct type-specific information extraction for components with hierarchical titles or non-text elements. Second, we design the Component-Correlation Tree (CCTree) to hierarchically organize components, explicitly modeling inter-component relations and layout distinctions through a bottom-up cascade summarization process. Finally, we propose a question-type-aware retrieval strategy that supports (1) layout-based grid partitioning for location-based retrieval and (2) LLM-guided pruning for semantic-based retrieval. Experiments show MoDora outperforms baselines by 5.97%-61.07% in accuracy. The code is at https://github.com/weAIDB/MoDora.

cs.IR↗

arXiv2026

Qute: Towards Quantum-Native Database

This paper envisions a quantum database (Qute) that treats quantum computation as a first-class execution option. Unlike prior simulation-based methods that either run quantum algorithms on classical machines or adapt existing databases for quantum simulation, Qute instead (i) compiles an extended form of SQL into gate-efficient quantum circuits, (ii) employs a hybrid optimizer to dynamically select between quantum and classical execution plans, (iii) introduces selective quantum indexing, and (iv) designs fidelity-preserving storage to mitigate current qubit constraints. We also present a three-stage evolution roadmap toward quantum-native database. Finally, by deploying Qute on a real quantum processor (origin_wukong), we show that it outperforms a classical baseline at scale, and we release an open-source prototype at https://github.com/weAIDB/Qute.

cs.DB↗

arXiv2026

Nexus: Inferring Join Graphs from Metadata Alone via Iterative Low-Rank Matrix Completion

Automatically inferring join relationships is a critical task for effective data discovery, integration, querying and reuse. However, accurately and efficiently identifying these relationships in large and complex schemas can be challenging, especially in enterprise settings where access to data values is constrained. In this paper, we introduce the problem of join graph inference when only metadata is available. We conduct an empirical study on a large number of real-world schemas and observe that join graphs when represented as adjacency matrices exhibit two key properties: high sparsity and low-rank structure. Based on these novel observations, we formulate join graph inference as a low-rank matrix completion problem and propose Nexus, an end-to-end solution using only metadata. To further enhance accuracy, we propose a novel Expectation-Maximization algorithm that alternates between low-rank matrix completion and refining join candidate probabilities by leveraging Large Language Models. Our extensive experiments demonstrate that Nexus outperforms existing methods by a significant margin on four datasets including a real-world production dataset. Additionally, Nexus can operate in a fast mode, providing comparable results with up to 6x speedup, offering a practical and efficient solution for real-world deployments.

cs.DB↗

arXiv2026

Can LLMs Clean Up Your Mess? A Survey of Application-Ready Data Preparation with LLMs

Data preparation aims to denoise raw datasets, uncover cross-dataset relationships, and extract valuable insights from them, which is essential for a wide range of data-centric applications. Driven by (i) rising demands for application-ready data (e.g., for analytics, visualization, decision-making), (ii) increasingly powerful LLM techniques, and (iii) the emergence of infrastructures that facilitate flexible agent construction (e.g., using Databricks Unity Catalog), LLM-enhanced methods are rapidly becoming a transformative and potentially dominant paradigm for data preparation. By investigating hundreds of recent literature works, this paper presents a systematic review of this evolving landscape, focusing on the use of LLM techniques to prepare data for diverse downstream tasks. First, we characterize the fundamental paradigm shift, from rule-based, model-specific pipelines to prompt-driven, context-aware, and agentic preparation workflows. Next, we introduce a task-centric taxonomy that organizes the field into three major tasks: data cleaning (e.g., standardization, error processing, imputation), data integration (e.g., entity matching, schema matching), and data enrichment (e.g., data annotation, profiling). For each task, we survey representative techniques, and highlight their respective strengths (e.g., improved generalization, semantic understanding) and limitations (e.g., the prohibitive cost of scaling LLMs, persistent hallucinations even in advanced agents, the mismatch between advanced methods and weak evaluation). Moreover, we analyze commonly used datasets and evaluation metrics (the empirical part). Finally, we discuss open research challenges and outline a forward-looking roadmap that emphasizes scalable LLM-data systems, principled designs for reliable agentic workflows, and robust evaluation protocols.

cs.DB↗

arXiv2025

LLM/Agent-as-Data-Analyst: A Survey

Large language models (LLMs) and agent techniques have brought a fundamental shift in the functionality and development paradigm of data analysis tasks (a.k.a LLM/Agent-as-Data-Analyst), demonstrating substantial impact across both academia and industry. In comparison with traditional rule or small-model based approaches, (agentic) LLMs enable complex data understanding, natural language interfaces, semantic analysis functions, and autonomous pipeline orchestration. From a modality perspective, we review LLM-based techniques for (i) structured data (e.g., NL2SQL, NL2GQL, ModelQA), (ii) semi-structured data (e.g., markup languages understanding, semi-structured table question answering), (iii) unstructured data (e.g., chart understanding, text/image document understanding), and (iv) heterogeneous data (e.g., data retrieval and modality alignment in data lakes). The technical evolution further distills four key design goals for intelligent data analysis agents, namely semantic-aware design, autonomous pipelines, tool-augmented workflows, and support for open-world tasks. Finally, we outline the remaining challenges and propose several insights and practical directions for advancing LLM/Agent-powered data analysis.

cs.AI↗

arXiv2025

Jupiter: Enhancing LLM Data Analysis Capabilities via Notebook and Inference-Time Value-Guided Search

Large language models (LLMs) have shown great promise in automating data science workflows, but existing models still struggle with multi-step reasoning and tool use, which limits their effectiveness on complex data analysis tasks. To address this, we propose a scalable pipeline that extracts high-quality, tool-based data analysis tasks and their executable multi-step solutions from real-world Jupyter notebooks and associated data files. Using this pipeline, we introduce NbQA, a large-scale dataset of standardized task-solution pairs that reflect authentic tool-use patterns in practical data science scenarios. To further enhance multi-step reasoning, we present Jupiter, a framework that formulates data analysis as a search problem and applies Monte Carlo Tree Search (MCTS) to generate diverse solution trajectories for value model learning. During inference, Jupiter combines the value model and node visit counts to efficiently collect executable multi-step plans with minimal search steps. Experimental results show that Qwen2.5-7B and 14B-Instruct models on NbQA solve 77.82% and 86.38% of tasks on InfiAgent-DABench, respectively-matching or surpassing GPT-4o and advanced agent frameworks. Further evaluations demonstrate improved generalization and stronger tool-use reasoning across diverse multi-step reasoning tasks. Code and data are available at https://github.com/microsoft/Jupiter.

cs.AI↗

arXiv2025

MMTU: A Massive Multi-Task Table Understanding and Reasoning Benchmark

Tables and table-based use cases play a crucial role in many important real-world applications, such as spreadsheets, databases, and computational notebooks, which traditionally require expert-level users like data engineers, data analysts, and database administrators to operate. Although LLMs have shown remarkable progress in working with tables (e.g., in spreadsheet and database copilot scenarios), comprehensive benchmarking of such capabilities remains limited. In contrast to an extensive and growing list of NLP benchmarks, evaluations of table-related tasks are scarce, and narrowly focus on tasks like NL-to-SQL and Table-QA, overlooking the broader spectrum of real-world tasks that professional users face. This gap limits our understanding and model progress in this important area. In this work, we introduce MMTU, a large-scale benchmark with over 28K questions across 25 real-world table tasks, designed to comprehensively evaluate models ability to understand, reason, and manipulate real tables at the expert-level. These tasks are drawn from decades' worth of computer science research on tabular data, with a focus on complex table tasks faced by professional users. We show that MMTU require a combination of skills -- including table understanding, reasoning, and coding -- that remain challenging for today's frontier models, where even frontier reasoning models like OpenAI GPT-5 and DeepSeek R1 score only around 69\% and 57\% respectively, suggesting significant room for improvement. We highlight key findings in our evaluation using MMTU and hope that this benchmark drives further advances in understanding and developing foundation models for structured data processing and analysis. Our code and data are available at https://github.com/MMTU-Benchmark/MMTU and https://huggingface.co/datasets/MMTU-benchmark/MMTU.

cs.AI↗

arXiv2025

Auto-Prep: Holistic Prediction of Data Preparation Steps for Self-Service Business Intelligence

Business Intelligence (BI) plays a critical role in empowering modern enterprises to make informed data-driven decisions, and has grown into a billion-dollar business. Self-service BI tools like Power BI and Tableau have democratized the ``dashboarding'' phase of BI, by offering user-friendly, drag-and-drop interfaces that are tailored to non-technical enterprise users. However, despite these advances, we observe that the ``data preparation'' phase of BI continues to be a key pain point for BI users today. In this work, we systematically study around 2K real BI projects harvested from public sources, focusing on the data-preparation phase of the BI workflows. We observe that users often have to program both (1) data transformation steps and (2) table joins steps, before their raw data can be ready for dashboarding and analysis. A careful study of the BI workflows reveals that transformation and join steps are often intertwined in the same BI project, such that considering both holistically is crucial to accurately predict these steps. Leveraging this observation, we develop an Auto-Prep system to holistically predict transformations and joins, using a principled graph-based algorithm inspired by Steiner-tree, with provable quality guarantees. Extensive evaluations using real BI projects suggest that Auto-Prep can correctly predict over 70\% transformation and join steps, significantly more accurate than existing algorithms as well as language-models such as GPT-4.

cs.DB↗

arXiv2025

Auto-Test: Learning Semantic-Domain Constraints for Unsupervised Error Detection in Tables

Data cleaning is a long-standing challenge in data management. While powerful logic and statistical algorithms have been developed to detect and repair data errors in tables, existing algorithms predominantly rely on domain-experts to first manually specify data-quality constraints specific to a given table, before data cleaning algorithms can be applied. In this work, we propose a new class of data-quality constraints that we call Semantic-Domain Constraints, which can be reliably inferred and automatically applied to any tables, without requiring domain-experts to manually specify on a per-table basis. We develop a principled framework to systematically learn such constraints from table corpora using large-scale statistical tests, which can further be distilled into a core set of constraints using our optimization framework, with provable quality guarantees. Extensive evaluations show that this new class of constraints can be used to both (1) directly detect errors on real tables in the wild, and (2) augment existing expert-driven data-cleaning techniques as a new class of complementary constraints. Our extensively labeled benchmark dataset with 2400 real data columns, as well as our code are available at https://github.com/qixuchen/AutoTest to facilitate future research.

cs.DB↗

arXiv2025

TableLoRA: Low-rank Adaptation on Table Structure Understanding for Large Language Models

Tabular data are crucial in many fields and their understanding by large language models (LLMs) under high parameter efficiency paradigm is important. However, directly applying parameter-efficient fine-tuning (PEFT) techniques to tabular tasks presents significant challenges, particularly in terms of better table serialization and the representation of two-dimensional structured information within a one-dimensional sequence. To address this, we propose TableLoRA, a module designed to improve LLMs' understanding of table structure during PEFT. It incorporates special tokens for serializing tables with special token encoder and uses 2D LoRA to encode low-rank information on cell positions. Experiments on four tabular-related datasets demonstrate that TableLoRA consistently outperforms vanilla LoRA and surpasses various table encoding methods tested in control experiments. These findings reveal that TableLoRA, as a table-specific LoRA, enhances the ability of LLMs to process tabular data effectively, especially in low-parameter settings, demonstrating its potential as a robust solution for handling table-related tasks.

cs.CL↗

arXiv2024

Table-LLM-Specialist: Language Model Specialists for Tables using Iterative Generator-Validator Fine-tuning

Language models such as GPT and Llama have shown remarkable ability on diverse natural language tasks, yet their performance on complex table tasks (e.g., NL-to-Code and data cleaning) remains suboptimal. Improving performance typically requires task-specific fine-tuning, which depends on expensive human labeling and is prone to overfitting. In this work, we propose Table-LLM-Specialist, a self-trained fine-tuning paradigm designed for table tasks. Our key insight is that many table tasks admit two dual formulations: a generative version and a classification version. Leveraging this duality, we introduce a Generator-Validator paradigm that iteratively generates and validates training data using language models, enabling effective fine-tuning without manually labeled data. Extensive evaluations on Llama, GPT-3.5, and GPT-4 show that Table-LLM-Specialist achieves (1) strong performance across diverse tasks compared to base models, for example, models fine-tuned on GPT-3.5 often surpass GPT-4 level quality; (2) lower deployment cost by enabling smaller models to reach high quality with reduced latency and cost; and (3) better generalization across multiple benchmarks, due to training on diverse, systematically generated data from real-world tables. Our code is available at https://github.com/microsoft/Table-Specialist. Models fine-tuned with Table-LLM-Specialist have been integrated into Microsoft Excel and are deployed in production for automated table data cleaning.

cs.CL↗

arXiv2024

SpreadsheetLLM: Encoding Spreadsheets for Large Language Models

Spreadsheets are characterized by their extensive two-dimensional grids, flexible layouts, and varied formatting options, which pose significant challenges for large language models (LLMs). In response, we introduce SpreadsheetLLM, pioneering an efficient encoding method designed to unleash and optimize LLMs' powerful understanding and reasoning capability on spreadsheets. Initially, we propose a vanilla serialization approach that incorporates cell addresses, values, and formats. However, this approach was limited by LLMs' token constraints, making it impractical for most applications. To tackle this challenge, we develop SheetCompressor, an innovative encoding framework that compresses spreadsheets effectively for LLMs. It comprises three modules: structural-anchor-based compression, inverse index translation, and data-format-aware aggregation. It significantly improves performance in the spreadsheet table detection task, outperforming the vanilla approach by 25.6% in GPT4's in-context learning setting. Moreover, fine-tuned LLM with SheetCompressor has an average compression ratio of 25 times, and achieves a state-of-the-art 78.9% F1 score, surpassing the best existing models by 12.3%. Finally, we propose Chain of Spreadsheet for downstream tasks of spreadsheet understanding and validate it in a new and demanding spreadsheet QA task. We methodically leverage the inherent layout and structure of spreadsheets, demonstrating that SpreadsheetLLM is highly effective across a variety of spreadsheet tasks.

cs.AI↗

arXiv2024

Vision Language Models for Spreadsheet Understanding: Challenges and Opportunities

This paper explores capabilities of Vision Language Models on spreadsheet comprehension. We propose three self-supervised challenges with corresponding evaluation metrics to comprehensively evaluate VLMs on Optical Character Recognition (OCR), spatial perception, and visual format recognition. Additionally, we utilize the spreadsheet table detection task to assess the overall performance of VLMs by integrating these challenges. To probe VLMs more finely, we propose three spreadsheet-to-image settings: column width adjustment, style change, and address augmentation. We propose variants of prompts to address the above tasks in different settings. Notably, to leverage the strengths of VLMs in understanding text rather than two-dimensional positioning, we propose to decode cell values on the four boundaries of the table in spreadsheet boundary detection. Our findings reveal that VLMs demonstrate promising OCR capabilities but produce unsatisfactory results due to cell omission and misalignment, and they notably exhibit insufficient spatial and format recognition skills, motivating future work to enhance VLMs' spreadsheet data comprehension capabilities using our methods to generate extensive spreadsheet-image pairs in various settings.

cs.CV↗

arXiv2024

Auto-Formula: Recommend Formulas in Spreadsheets using Contrastive Learning for Table Representations

Spreadsheets are widely recognized as the most popular end-user programming tools, which blend the power of formula-based computation, with an intuitive table-based interface. Today, spreadsheets are used by billions of users to manipulate tables, most of whom are neither database experts nor professional programmers. Despite the success of spreadsheets, authoring complex formulas remains challenging, as non-technical users need to look up and understand non-trivial formula syntax. To address this pain point, we leverage the observation that there is often an abundance of similar-looking spreadsheets in the same organization, which not only have similar data, but also share similar computation logic encoded as formulas. We develop an Auto-Formula system that can accurately predict formulas that users want to author in a target spreadsheet cell, by learning and adapting formulas that already exist in similar spreadsheets, using contrastive-learning techniques inspired by "similar-face recognition" from compute vision. Extensive evaluations on over 2K test formulas extracted from real enterprise spreadsheets show the effectiveness of Auto-Formula over alternatives. Our benchmark data is available at https://github.com/microsoft/Auto-Formula to facilitate future research.

cs.DB↗

arXiv2023

Table-GPT: Table-tuned GPT for Diverse Table Tasks

Language models, such as GPT-3.5 and ChatGPT, demonstrate remarkable abilities to follow diverse human instructions and perform a wide range of tasks. However, when probing language models using a range of basic table-understanding tasks, we observe that today's language models are still sub-optimal in many table-related tasks, likely because they are pre-trained predominantly on \emph{one-dimensional} natural-language texts, whereas relational tables are \emph{two-dimensional} objects. In this work, we propose a new "\emph{table-tuning}" paradigm, where we continue to train/fine-tune language models like GPT-3.5 and ChatGPT, using diverse table-tasks synthesized from real tables as training data, with the goal of enhancing language models' ability to understand tables and perform table tasks. We show that our resulting Table-GPT models demonstrate (1) better \emph{table-understanding} capabilities, by consistently outperforming the vanilla GPT-3.5 and ChatGPT, on a wide-range of table tasks, including holdout unseen tasks, and (2) strong \emph{generalizability}, in its ability to respond to diverse human instructions to perform new table-tasks, in a manner similar to GPT-3.5 and ChatGPT.

cs.CL↗