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Yi Shi

Publications and source records attributed to Yi Shi.

At least 109 records · Page 6Linked to original sources
arXiv2021

A novel framework to quantify uncertainty in peptide-tandem mass spectrum matches with application to nanobody peptide identification

Nanobodies are small antibody fragments derived from camelids that selectively bind to antigens. These proteins have marked physicochemical properties that support advanced therapeutics, including treatments for SARS-CoV-2. To realize their potential, bottom-up proteomics via liquid chromatography-tandem mass spectrometry (LC-MS/MS) has been proposed to identify antigen-specific nanobodies at the proteome scale, where a critical component of this pipeline is matching nanobody peptides to their begotten tandem mass spectra. While peptide-spectrum matching is a well-studied problem, we show the sequence similarity between nanobody peptides violates key assumptions necessary to infer nanobody peptide-spectrum matches (PSMs) with the standard target-decoy paradigm, and prove these violations beget inflated error rates. To address these issues, we then develop a novel framework and method that treats peptide-spectrum matching as a Bayesian model selection problem with an incomplete model space, which are, to our knowledge, the first to account for all sources of PSM error without relying on the aforementioned assumptions. In addition to illustrating our method's improved performance on simulated and real nanobody data, our work demonstrates how to leverage novel retention time and spectrum prediction tools to develop accurate and discriminating data-generating models, and, to our knowledge, provides the first rigorous description of MS/MS spectrum noise.

q-bio.QM↗
arXiv2021

Adversarial Attacks against Deep Learning Based Power Control in Wireless Communications

We consider adversarial machine learning based attacks on power allocation where the base station (BS) allocates its transmit power to multiple orthogonal subcarriers by using a deep neural network (DNN) to serve multiple user equipments (UEs). The DNN that corresponds to a regression model is trained with channel gains as the input and returns transmit powers as the output. While the BS allocates the transmit powers to the UEs to maximize rates for all UEs, there is an adversary that aims to minimize these rates. The adversary may be an external transmitter that aims to manipulate the inputs to the DNN by interfering with the pilot signals that are transmitted to measure the channel gain. Alternatively, the adversary may be a rogue UE that transmits fabricated channel estimates to the BS. In both cases, the adversary carefully crafts adversarial perturbations to manipulate the inputs to the DNN of the BS subject to an upper bound on the strengths of these perturbations. We consider the attacks targeted on a single UE or all UEs. We compare these attacks with a benchmark, where the adversary scales down the input to the DNN. We show that the adversarial attacks are much more effective than the benchmark attack in terms of reducing the rate of communications. We also show that adversarial attacks are robust to the uncertainty at the adversary including the erroneous knowledge of channel gains and the potential errors in exercising the attacks exactly as specified.

eess.SP↗
arXiv2021

$C^r$-Closing lemma for partially hyperbolic diffeomorphisms with 1D-center bundle

For every $r\in\mathbb{N}_{\geq2}\cup\{\infty\}$, we prove the $C^r$-closing lemma for general and conservative partially hyperbolic diffeomorphisms with one-dimensional center bundle. In particular, it implies periodic points are dense for $C^r$-generic conservative partially hyperbolic diffeomorphisms with one-dimensional center bundle.

math.DS↗
arXiv2021

High power Figure-of-Merit, 10.6-kV AlGaN/GaN lateral Schottky barrier diode with single channel and sub-100-μm anode-to-cathode spacing

GaN-based lateral Schottky diodes (SBDs) have attracted great attention for high-power applications due to its combined high electron mobility and large critical breakdown field. However, the breakdown voltage (BV) of the SBDs are far from exploiting the material advantages of GaN at present, limiting the desire to use GaN for ultra-high voltage (UHV) applications. Then, a golden question is whether the excellent properties of GaN-based materials can be practically used in the UHV field? Here we demonstrate UHV AlGaN/GaN SBDs on sapphire with a BV of 10.6 kV, a specific on-resistance of 25.8 mΩ.cm2, yielding a power figure of merit of more than 3.8 GW/cm2. These devices are designed with single channel and 85-μm anode-to-cathode spacing, without other additional electric field management, demonstrating its great potential for the UHV application in power electronics.

cond-mat.mtrl-sci↗
arXiv2021

Membership Inference Attack and Defense for Wireless Signal Classifiers with Deep Learning

An over-the-air membership inference attack (MIA) is presented to leak private information from a wireless signal classifier. Machine learning (ML) provides powerful means to classify wireless signals, e.g., for PHY-layer authentication. As an adversarial machine learning attack, the MIA infers whether a signal of interest has been used in the training data of a target classifier. This private information incorporates waveform, channel, and device characteristics, and if leaked, can be exploited by an adversary to identify vulnerabilities of the underlying ML model (e.g., to infiltrate the PHY-layer authentication). One challenge for the over-the-air MIA is that the received signals and consequently the RF fingerprints at the adversary and the intended receiver differ due to the discrepancy in channel conditions. Therefore, the adversary first builds a surrogate classifier by observing the spectrum and then launches the black-box MIA on this classifier. The MIA results show that the adversary can reliably infer signals (and potentially the radio and channel information) used to build the target classifier. Therefore, a proactive defense is developed against the MIA by building a shadow MIA model and fooling the adversary. This defense can successfully reduce the MIA accuracy and prevent information leakage from the wireless signal classifier.

cs.CR↗
arXiv2021

Localized surface plasmon enhanced InGaN-based light-emitting diodes with polygonal Au/Al nanoparticles

Localized surface plasmons (LSPs) have played a significant role in improving the light emission efficiency of light emitting diodes (LEDs). In this report, polygonal nanoholes have been fabricated in the p-GaN layer of InGaN-based LEDs by using Ni nanoporous film as the etching mask, and then Au/Al metal nanoparticles are embedded in the nanoholes to form the LSP structure. The coupling between the LSP and the LED has been clearly observed. The results show that the light output of the LEDs has been increased by 46% at higher current injection condition, and together with a shift of the gain peak position to the LSP peak resonance energy. As the coupling distance is decreased from 60 nm to 30 nm, the maximum enhancement factor increases to 2.38. The above results indicate that the LSP from the polygonal metal nanoparticles is a kind of very promising structure to enhance the lighting performance of the InGaN-based LEDs.

physics.optics↗
arXiv2021

Improve GAN-based Neural Vocoder using Pointwise Relativistic LeastSquare GAN

GAN-based neural vocoders, such as Parallel WaveGAN and MelGAN have attracted great interest due to their lightweight and parallel structures, enabling them to generate high fidelity waveform in a real-time manner. In this paper, inspired by Relativistic GAN, we introduce a novel variant of the LSGAN framework under the context of waveform synthesis, named Pointwise Relativistic LSGAN (PRLSGAN). In this approach, we take the truism score distribution into consideration and combine the original MSE loss with the proposed pointwise relative discrepancy loss to increase the difficulty of the generator to fool the discriminator, leading to improved generation quality. Moreover, PRLSGAN is a general-purposed framework that can be combined with any GAN-based neural vocoder to enhance its generation quality. Experiments have shown a consistent performance boost based on Parallel WaveGAN and MelGAN, demonstrating the effectiveness and strong generalization ability of our proposed PRLSGAN neural vocoders.

cs.SD↗
arXiv2021

Horizontal diameter of unit spheres with polar foliations and infinitesimally polar actions

For a singular Riemannian foliation $\mathcal{F}$ on a Riemannian manifold, a curve is called horizontal if it meets the leaves of $\mathcal{F}$ perpendicularly. For a singular Riemannian foliation $\mathcal{F}$ on a unit sphere $\mathbb{S}^{n}$, we show that if $\mathcal{F}$ is a polar foliation or if $\mathcal{F}$ is given by the orbits of an infinitesimally polar action, then the horizontal diameter of $\mathbb{S}^{n}$ is $π$, i.e., any two points in $\mathbb{S}^{n}$ can be connected by a horizontal curve of length $\leqπ$.

math.DG↗
arXiv2021

Controlling relaxation dynamics of excitonic states in monolayer transition metal dichalcogenides WS2 through interface engineering

Transition metal dichalcogenides (TMDs) are known to support complex excitonic states. Revealing the differences in relaxation dynamics among different excitonic species and elucidating the transition dynamics between them may provide important guidelines for designing TMD-based excitonic devices. Combining photoluminescence (PL) and reflectance contrast measurements with ultrafast pump-probe spectroscopy under cryogenic temperatures, we herein study the relaxation dynamics of neutral and charged excitons in a back-gate-controlled monolayer device. Pump-probe results reveal quite different relaxation dynamics of excitonic states under different interfacial conditions: while neutral excitons experience much longer lifetime than trions in monolayer WS2, the opposite is true in the WS2/h-BN heterostructure. It is found that the insertion of h-BN layer between the TMD monolayer and the substrate has a great influence on the lifetimes of different excitonic states. The h-BN flakes can not only screen the effects of impurities and defects at the interface, but also help establish a non-radiative transition from neutral excitons to trions to be the dominant relaxation pathway, under cryogenic temperature. Our findings highlight the important role interface may play in governing the transient properties of carriers in 2D semiconductors, and may also have implications for designing light-emitting and photo-detecting devices based on TMDs.

cond-mat.mes-hall↗
arXiv2021

Adversarial Machine Learning for Flooding Attacks on 5G Radio Access Network Slicing

Network slicing manages network resources as virtual resource blocks (RBs) for the 5G Radio Access Network (RAN). Each communication request comes with quality of experience (QoE) requirements such as throughput and latency/deadline, which can be met by assigning RBs, communication power, and processing power to the request. For a completed request, the achieved reward is measured by the weight (priority) of this request. Then, the reward is maximized over time by allocating resources, e.g., with reinforcement learning (RL). In this paper, we introduce a novel flooding attack on 5G network slicing, where an adversary generates fake network slicing requests to consume the 5G RAN resources that would be otherwise available to real requests. The adversary observes the spectrum and builds a surrogate model on the network slicing algorithm through RL that decides on how to craft fake requests to minimize the reward of real requests over time. We show that the portion of the reward achieved by real requests may be much less than the reward that would be achieved when there was no attack. We also show that this flooding attack is more effective than other benchmark attacks such as random fake requests and fake requests with the minimum resource requirement (lowest QoE requirement). Fake requests may be detected due to their fixed weight. As an attack enhancement, we present schemes to randomize weights of fake requests and show that it is still possible to reduce the reward of real requests while maintaining the balance on weight distributions.

cs.NI↗
arXiv2021

Adversarial Machine Learning for 5G Communications Security

Machine learning provides automated means to capture complex dynamics of wireless spectrum and support better understanding of spectrum resources and their efficient utilization. As communication systems become smarter with cognitive radio capabilities empowered by machine learning to perform critical tasks such as spectrum awareness and spectrum sharing, they also become susceptible to new vulnerabilities due to the attacks that target the machine learning applications. This paper identifies the emerging attack surface of adversarial machine learning and corresponding attacks launched against wireless communications in the context of 5G systems. The focus is on attacks against (i) spectrum sharing of 5G communications with incumbent users such as in the Citizens Broadband Radio Service (CBRS) band and (ii) physical layer authentication of 5G User Equipment (UE) to support network slicing. For the first attack, the adversary transmits during data transmission or spectrum sensing periods to manipulate the signal-level inputs to the deep learning classifier that is deployed at the Environmental Sensing Capability (ESC) to support the 5G system. For the second attack, the adversary spoofs wireless signals with the generative adversarial network (GAN) to infiltrate the physical layer authentication mechanism based on a deep learning classifier that is deployed at the 5G base station. Results indicate major vulnerabilities of 5G systems to adversarial machine learning. To sustain the 5G system operations in the presence of adversaries, a defense mechanism is presented to increase the uncertainty of the adversary in training the surrogate model used for launching its subsequent attacks.

cs.NI↗
arXiv2020

High order asymptotic preserving discontinuous Galerkin methods for gray radiative transfer equations

In this paper, we will develop a class of high order asymptotic preserving (AP) discontinuous Galerkin (DG) methods for nonlinear time-dependent gray radiative transfer equations (GRTEs). Inspired by the work \cite{Peng2020stability}, in which stability enhanced high order AP DG methods are proposed for linear transport equations, we propose to pernalize the nonlinear GRTEs under the micro-macro decomposition framework by adding a weighted linear diffusive term. In the diffusive limit, a hyperbolic, namely $Δt=\mathcal{O}(h)$ where $Δt$ and $h$ are the time step and mesh size respectively, instead of parabolic $Δt=\mathcal{O}(h^2)$ time step restriction is obtained, which is also free from the photon mean free path. The main new ingredient is that we further employ a Picard iteration with a predictor-corrector procedure, to decouple the resulting global nonlinear system to a linear system with local nonlinear algebraic equations from an outer iterative loop. Our scheme is shown to be asymptotic preserving and asymptotically accurate. Numerical tests for one and two spatial dimensional problems are performed to demonstrate that our scheme is of high order, effective and efficient.

math.NA↗
arXiv2020

Reinforcement Learning for Dynamic Resource Optimization in 5G Radio Access Network Slicing

The paper presents a reinforcement learning solution to dynamic resource allocation for 5G radio access network slicing. Available communication resources (frequency-time blocks and transmit powers) and computational resources (processor usage) are allocated to stochastic arrivals of network slice requests. Each request arrives with priority (weight), throughput, computational resource, and latency (deadline) requirements, and if feasible, it is served with available communication and computational resources allocated over its requested duration. As each decision of resource allocation makes some of the resources temporarily unavailable for future, the myopic solution that can optimize only the current resource allocation becomes ineffective for network slicing. Therefore, a Q-learning solution is presented to maximize the network utility in terms of the total weight of granted network slicing requests over a time horizon subject to communication and computational constraints. Results show that reinforcement learning provides major improvements in the 5G network utility relative to myopic, random, and first come first served solutions. While reinforcement learning sustains scalable performance as the number of served users increases, it can also be effectively used to assign resources to network slices when 5G needs to share the spectrum with incumbent users that may dynamically occupy some of the frequency-time blocks.

cs.NI↗
arXiv2020

Generative Adversarial Network in the Air: Deep Adversarial Learning for Wireless Signal Spoofing

The spoofing attack is critical to bypass physical-layer signal authentication. This paper presents a deep learning-based spoofing attack to generate synthetic wireless signals that cannot be statistically distinguished from intended transmissions. The adversary is modeled as a pair of a transmitter and a receiver that build the generator and discriminator of the generative adversarial network, respectively, by playing a minimax game over the air. The adversary transmitter trains a deep neural network to generate the best spoofing signals and fool the best defense trained as another deep neural network at the adversary receiver. Each node (defender or adversary) may have multiple transmitter or receiver antennas. Signals are spoofed by jointly capturing waveform, channel, and radio hardware effects that are inherent to wireless signals under attack. Compared with spoofing attacks using random or replayed signals, the proposed attack increases the probability of misclassifying spoofing signals as intended signals for different network topology and mobility patterns. The adversary transmitter can increase the spoofing attack success by using multiple antennas, while the attack success decreases when the defender receiver uses multiple antennas. For practical deployment, the attack implementation on embedded platforms demonstrates the low latency of generating or classifying spoofing signals.

cs.NI↗
arXiv2020

Over-the-Air Membership Inference Attacks as Privacy Threats for Deep Learning-based Wireless Signal Classifiers

This paper presents how to leak private information from a wireless signal classifier by launching an over-the-air membership inference attack (MIA). As machine learning (ML) algorithms are used to process wireless signals to make decisions such as PHY-layer authentication, the training data characteristics (e.g., device-level information) and the environment conditions (e.g., channel information) under which the data is collected may leak to the ML model. As a privacy threat, the adversary can use this leaked information to exploit vulnerabilities of the ML model following an adversarial ML approach. In this paper, the MIA is launched against a deep learning-based classifier that uses waveform, device, and channel characteristics (power and phase shifts) in the received signals for RF fingerprinting. By observing the spectrum, the adversary builds first a surrogate classifier and then an inference model to determine whether a signal of interest has been used in the training data of the receiver (e.g., a service provider). The signal of interest can then be associated with particular device and channel characteristics to launch subsequent attacks. The probability of attack success is high (more than 88% depending on waveform and channel conditions) in identifying signals of interest (and potentially the device and channel information) used to build a target classifier. These results show that wireless signal classifiers are vulnerable to privacy threats due to the over-the-air information leakage of their ML models

eess.SP↗
arXiv2020

Unsupervised Learning of Global Registration of Temporal Sequence of Point Clouds

Global registration of point clouds aims to find an optimal alignment of a sequence of 2D or 3D point sets. In this paper, we present a novel method that takes advantage of current deep learning techniques for unsupervised learning of global registration from a temporal sequence of point clouds. Our key novelty is that we introduce a deep Spatio-Temporal REPresentation (STREP) feature, which describes the geometric essence of both temporal and spatial relationship of the sequence of point clouds acquired with sensors in an unknown environment. In contrast to the previous practice that treats each time step (pair-wise registration) individually, our unsupervised model starts with optimizing a sequence of latent STREP feature, which is then decoded to a temporally and spatially continuous sequence of geometric transformations to globally align multiple point clouds. We have evaluated our proposed approach over both simulated 2D and real 3D datasets and the experimental results demonstrate that our method can beat other techniques by taking into account the temporal information in deep feature learning.

cs.CV↗