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Yi-Zhong Zhuo

Publications and source records attributed to Yi-Zhong Zhuo.

4 recordsLinked to original sources

Decoherence of coherent electronic excited state in the reaction center of the photosynthetic purple bacterium Rhodobacter sphaeroides

In this paper, we present a theoretical description to the quantum coherence and decoherence phenomena of energy transfer in photosynthesis observed in a recent experiment [see Science 316, 1462 (2007)]. As a successive two-color laser pulses with selected frequencies cast on a sample of the photosynthetic purple bacterium Rb. sphaeroides two resonant excitations of electrons in chromophores can be generated. However, this effective two-level subsystem will interact with its protein environment and decoherence is inevitable. We describe this subsystem coupled with its environment as a dynamical spin-boson model. The non-Markovian decoherence dynamics is described using a quasi-adiabatic propagator path integral (QUAPI) approach. With the photon-induced effective time-dependent level splitting energy and level flip coupling coefficient between the two excited states and the environment-induced non-Markovian decoherence dynamics, our theoretical result is in good agreement with the experimental data.

quant-ph↗

Intermediate dynamics between Newton and Langevin

A dynamics between Newton and Langevin formalisms is elucidated within the framework of the generalized Langevin equation. For thermal noise yielding a vanishing zero-frequency friction the corresponding non-Markovian Brownian dynamics exhibits anomalous behavior which is characterized by ballistic diffusion and accelerated transport. We also investigate the role of a possible initial correlation between the system degrees of freedom and the heat-bath degrees of freedom for the asymptotic long-time behavior of the system dynamics. As two test beds we investigate (i) the anomalous energy relaxation of free non-Markovian Brownian motion that is driven by a harmonic velocity noise and (ii) the phenomenon of a net directed acceleration in noise-induced transport of an inertial rocking Brownian motor.

cond-mat.stat-mech↗

Nonergodic Brownian Dynamics and the Fluctuation-Dissipation Theorem

Nonergodic Brownian motion is elucidated within the framework of the generalized Langevin equation. For thermal noise yielding either a vanishing or a divergent zero-frequency friction strength, the non-Markovian Browninan dynamics exhibits a riveting, anomalous diffusion behavior being characterized by a ballistic or possibly also a localized dynamics. As a consequence, such tailored thermal noise may cause a net acceleration of directed transport in a rocking Brownian motor. Two notable conditions for the thermal noise are identified in order to guarantee the fluctuation-dissipation theorem of first kind.

cond-mat.stat-mech↗

Motion of the hydrogen bond proton in cytosine and the transition between its normal and imino states

The potential energy surface of the H13 proton in base cytosine of the DNA molecules is calculated {\it ab initio} at the Gaussian98 MP2/6-311G(d,p) level. Two potential wells are found. One corresponds to the normal cytosine, while the other corresponds to its imino tautomer. The bindings of the proton in these wells are stable enough against the thermo-disturbance. The motions of the proton in these wells are oscillations around the nearest nitrogen atom like the pendula, and may move far away from the nitrogen atom to form the hydrogen bond with other bases. The estimated tunneling probability of the H13 proton from one well to another well shows that the life time of the proton staying in one of these wells is about 6$\times10^2$ yr. It is too long to let tautomers of cytosine be in thermodynamical equilibrium in a room temperature gas phase experiment. The biological significance of these result is discussed.

physics.bio-ph↗