arXiv subjects

Yidong Chen

Publications and source records attributed to Yidong Chen.

At least 37 records · Page 2Linked to original sources

arXiv2023

Conditional Variational Autoencoder for Sign Language Translation with Cross-Modal Alignment

Sign language translation (SLT) aims to convert continuous sign language videos into textual sentences. As a typical multi-modal task, there exists an inherent modality gap between sign language videos and spoken language text, which makes the cross-modal alignment between visual and textual modalities crucial. However, previous studies tend to rely on an intermediate sign gloss representation to help alleviate the cross-modal problem thereby neglecting the alignment across modalities that may lead to compromised results. To address this issue, we propose a novel framework based on Conditional Variational autoencoder for SLT (CV-SLT) that facilitates direct and sufficient cross-modal alignment between sign language videos and spoken language text. Specifically, our CV-SLT consists of two paths with two Kullback-Leibler (KL) divergences to regularize the outputs of the encoder and decoder, respectively. In the prior path, the model solely relies on visual information to predict the target text; whereas in the posterior path, it simultaneously encodes visual information and textual knowledge to reconstruct the target text. The first KL divergence optimizes the conditional variational autoencoder and regularizes the encoder outputs, while the second KL divergence performs a self-distillation from the posterior path to the prior path, ensuring the consistency of decoder outputs. We further enhance the integration of textual information to the posterior path by employing a shared Attention Residual Gaussian Distribution (ARGD), which considers the textual information in the posterior path as a residual component relative to the prior path. Extensive experiments conducted on public datasets (PHOENIX14T and CSL-daily) demonstrate the effectiveness of our framework, achieving new state-of-the-art results while significantly alleviating the cross-modal representation discrepancy.

cs.CL↗

arXiv2023

Layer-wise Representation Fusion for Compositional Generalization

Existing neural models are demonstrated to struggle with compositional generalization (CG), i.e., the ability to systematically generalize to unseen compositions of seen components. A key reason for failure on CG is that the syntactic and semantic representations of sequences in both the uppermost layer of the encoder and decoder are entangled. However, previous work concentrates on separating the learning of syntax and semantics instead of exploring the reasons behind the representation entanglement (RE) problem to solve it. We explain why it exists by analyzing the representation evolving mechanism from the bottom to the top of the Transformer layers. We find that the ``shallow'' residual connections within each layer fail to fuse previous layers' information effectively, leading to information forgetting between layers and further the RE problems. Inspired by this, we propose LRF, a novel \textbf{L}ayer-wise \textbf{R}epresentation \textbf{F}usion framework for CG, which learns to fuse previous layers' information back into the encoding and decoding process effectively through introducing a \emph{fuse-attention module} at each encoder and decoder layer. LRF achieves promising results on two realistic benchmarks, empirically demonstrating the effectiveness of our proposal.

cs.CL↗

arXiv2023

MOPRD: A multidisciplinary open peer review dataset

Open peer review is a growing trend in academic publications. Public access to peer review data can benefit both the academic and publishing communities. It also serves as a great support to studies on review comment generation and further to the realization of automated scholarly paper review. However, most of the existing peer review datasets do not provide data that cover the whole peer review process. Apart from this, their data are not diversified enough as the data are mainly collected from the field of computer science. These two drawbacks of the currently available peer review datasets need to be addressed to unlock more opportunities for related studies. In response, we construct MOPRD, a multidisciplinary open peer review dataset. This dataset consists of paper metadata, multiple version manuscripts, review comments, meta-reviews, author's rebuttal letters, and editorial decisions. Moreover, we propose a modular guided review comment generation method based on MOPRD. Experiments show that our method delivers better performance as indicated by both automatic metrics and human evaluation. We also explore other potential applications of MOPRD, including meta-review generation, editorial decision prediction, author rebuttal generation, and scientometric analysis. MOPRD is a strong endorsement for further studies in peer review-related research and other applications.

cs.DL↗

arXiv2023

Adapting Offline Speech Translation Models for Streaming with Future-Aware Distillation and Inference

A popular approach to streaming speech translation is to employ a single offline model with a wait-k policy to support different latency requirements, which is simpler than training multiple online models with different latency constraints. However, there is a mismatch problem in using a model trained with complete utterances for streaming inference with partial input. We demonstrate that speech representations extracted at the end of a streaming input are significantly different from those extracted from a complete utterance. To address this issue, we propose a new approach called Future-Aware Streaming Translation (FAST) that adapts an offline ST model for streaming input. FAST includes a Future-Aware Inference (FAI) strategy that incorporates future context through a trainable masked embedding, and a Future-Aware Distillation (FAD) framework that transfers future context from an approximation of full speech to streaming input. Our experiments on the MuST-C EnDe, EnEs, and EnFr benchmarks show that FAST achieves better trade-offs between translation quality and latency than strong baselines. Extensive analyses suggest that our methods effectively alleviate the aforementioned mismatch problem between offline training and online inference.

cs.CL↗

arXiv2023

Learning to Compose Representations of Different Encoder Layers towards Improving Compositional Generalization

Recent studies have shown that sequence-to-sequence (seq2seq) models struggle with compositional generalization (CG), i.e., the ability to systematically generalize to unseen compositions of seen components. There is mounting evidence that one of the reasons hindering CG is the representation of the encoder uppermost layer is entangled, i.e., the syntactic and semantic representations of sequences are entangled. However, we consider that the previously identified representation entanglement problem is not comprehensive enough. Additionally, we hypothesize that the source keys and values representations passing into different decoder layers are also entangled. Starting from this intuition, we propose \textsc{CompoSition} (\textbf{Compo}se \textbf{S}yntactic and Semant\textbf{i}c Representa\textbf{tion}s), an extension to seq2seq models which learns to compose representations of different encoder layers dynamically for different tasks, since recent studies reveal that the bottom layers of the Transformer encoder contain more syntactic information and the top ones contain more semantic information. Specifically, we introduce a \textit{composed layer} between the encoder and decoder to compose different encoder layers' representations to generate specific keys and values passing into different decoder layers. \textsc{CompoSition} achieves competitive results on two comprehensive and realistic benchmarks, which empirically demonstrates the effectiveness of our proposal. Codes are available at~\url{https://github.com/thinkaboutzero/COMPOSITION}.

cs.CL↗

arXiv2023

Automated scholarly paper review: Concepts, technologies, and challenges

Peer review is a widely accepted mechanism for research evaluation, playing a pivotal role in academic publishing. However, criticisms have long been leveled at this mechanism, mostly because of its poor efficiency and low reproducibility. Recent years have seen the application of artificial intelligence (AI) in assisting the peer review process. Nonetheless, with the involvement of humans, such limitations remain inevitable. In this paper, we propose the concept and pipeline of automated scholarly paper review (ASPR) and review the relevant literature and technologies of achieving a full-scale computerized review process. On the basis of the review and discussion, we conclude that there is already corresponding research and preliminary implementation at each stage of ASPR. We further look into the challenges in ASPR with the existing technologies. The major difficulties lie in inadequate data, imperfect document parsing and representation, defective human$\unicode{x2013}$computer interaction, and flawed deep logical reasoning. Moreover, we point out the future directions and discuss the possible moral and ethical issues of ASPR. In the foreseeable future, ASPR and peer review will coexist in a reinforcing manner before ASPR is able to fully undertake the reviewing workload from humans.

cs.AI↗

arXiv2023

CVT-SLR: Contrastive Visual-Textual Transformation for Sign Language Recognition with Variational Alignment

Sign language recognition (SLR) is a weakly supervised task that annotates sign videos as textual glosses. Recent studies show that insufficient training caused by the lack of large-scale available sign datasets becomes the main bottleneck for SLR. Most SLR works thereby adopt pretrained visual modules and develop two mainstream solutions. The multi-stream architectures extend multi-cue visual features, yielding the current SOTA performances but requiring complex designs and might introduce potential noise. Alternatively, the advanced single-cue SLR frameworks using explicit cross-modal alignment between visual and textual modalities are simple and effective, potentially competitive with the multi-cue framework. In this work, we propose a novel contrastive visual-textual transformation for SLR, CVT-SLR, to fully explore the pretrained knowledge of both the visual and language modalities. Based on the single-cue cross-modal alignment framework, we propose a variational autoencoder (VAE) for pretrained contextual knowledge while introducing the complete pretrained language module. The VAE implicitly aligns visual and textual modalities while benefiting from pretrained contextual knowledge as the traditional contextual module. Meanwhile, a contrastive cross-modal alignment algorithm is designed to explicitly enhance the consistency constraints. Extensive experiments on public datasets (PHOENIX-2014 and PHOENIX-2014T) demonstrate that our proposed CVT-SLR consistently outperforms existing single-cue methods and even outperforms SOTA multi-cue methods.

cs.CV↗

arXiv2023

Noncommutative Poisson Random Measure and Its Applications

We introduce a noncommutative Poisson random measure on a von Neumann algebra. This is a noncommutative generalization of the classical Poisson random measure. We call this construction Poissonization. Poissonization is a functor from the category of von Neumann algebras with normal semifinite faithful weights to the category of von Neumann algebras with normal faithful states. Poissonization is a natural adaptation of the second quantization to the context of von Neumann algebras. The construction is compatible with normal (weight-preserving) homomorphisms and unital normal completely positive (weight-preserving) maps. We present two main applications of Poissonization. First Poissonization provides a new framework to construct algebraic quantum field theories that are not generalized free field theories. Second Poissonization permits straight-forward calculations of quantum relative entropies (and other quantum information quantities) in the case of type III von Neumann algebras.

math.OA↗

arXiv2023

A Token-level Contrastive Framework for Sign Language Translation

Sign Language Translation (SLT) is a promising technology to bridge the communication gap between the deaf and the hearing people. Recently, researchers have adopted Neural Machine Translation (NMT) methods, which usually require large-scale corpus for training, to achieve SLT. However, the publicly available SLT corpus is very limited, which causes the collapse of the token representations and the inaccuracy of the generated tokens. To alleviate this issue, we propose ConSLT, a novel token-level \textbf{Con}trastive learning framework for \textbf{S}ign \textbf{L}anguage \textbf{T}ranslation , which learns effective token representations by incorporating token-level contrastive learning into the SLT decoding process. Concretely, ConSLT treats each token and its counterpart generated by different dropout masks as positive pairs during decoding, and then randomly samples $K$ tokens in the vocabulary that are not in the current sentence to construct negative examples. We conduct comprehensive experiments on two benchmarks (PHOENIX14T and CSL-Daily) for both end-to-end and cascaded settings. The experimental results demonstrate that ConSLT can achieve better translation quality than the strong baselines.

cs.CL↗

arXiv2023

Entropy Decay Estimates For Collective Noise Models

One of the challenges in quantum information science is to control open quantum systems with a large number of qubits. An important aspect of many-body systems is the emergence of collective phenomena. One collective noise model is an open atomic system in an electromagnetic environment. This model was considered by Dicke in the 50's Dicke. In this paper, we study the entropic decay in Dicke's model and other related collective noise models. Specifically, we develop a general framework to estimate the spectral gap and modified logarithmic Sobolev constant of these collective noise models. In addition, we study the necessary mixing conditions a general Dicke's model must satisfy in order to have a unique equilibrium state. The combination of representation theory and entropy estimates could be a guideline to study more general collective noise models.

quant-ph↗

arXiv2022

Towards Better Document-level Relation Extraction via Iterative Inference

Document-level relation extraction (RE) aims to extract the relations between entities from the input document that usually containing many difficultly-predicted entity pairs whose relations can only be predicted through relational inference. Existing methods usually directly predict the relations of all entity pairs of input document in a one-pass manner, ignoring the fact that predictions of some entity pairs heavily depend on the predicted results of other pairs. To deal with this issue, in this paper, we propose a novel document-level RE model with iterative inference. Our model is mainly composed of two modules: 1) a base module expected to provide preliminary relation predictions on entity pairs; 2) an inference module introduced to refine these preliminary predictions by iteratively dealing with difficultly-predicted entity pairs depending on other pairs in an easy-to-hard manner. Unlike previous methods which only consider feature information of entity pairs, our inference module is equipped with two Extended Cross Attention units, allowing it to exploit both feature information and previous predictions of entity pairs during relational inference. Furthermore, we adopt a two-stage strategy to train our model. At the first stage, we only train our base module. During the second stage, we train the whole model, where contrastive learning is introduced to enhance the training of inference module. Experimental results on three commonly-used datasets show that our model consistently outperforms other competitive baselines.

cs.CL↗

arXiv2022

Leveraging Graph-based Cross-modal Information Fusion for Neural Sign Language Translation

Sign Language (SL), as the mother tongue of the deaf community, is a special visual language that most hearing people cannot understand. In recent years, neural Sign Language Translation (SLT), as a possible way for bridging communication gap between the deaf and the hearing people, has attracted widespread academic attention. We found that the current mainstream end-to-end neural SLT models, which tries to learning language knowledge in a weakly supervised manner, could not mine enough semantic information under the condition of low data resources. Therefore, we propose to introduce additional word-level semantic knowledge of sign language linguistics to assist in improving current end-to-end neural SLT models. Concretely, we propose a novel neural SLT model with multi-modal feature fusion based on the dynamic graph, in which the cross-modal information, i.e. text and video, is first assembled as a dynamic graph according to their correlation, and then the graph is processed by a multi-modal graph encoder to generate the multi-modal embeddings for further usage in the subsequent neural translation models. To the best of our knowledge, we are the first to introduce graph neural networks, for fusing multi-modal information, into neural sign language translation models. Moreover, we conducted experiments on a publicly available popular SLT dataset RWTH-PHOENIX-Weather-2014T. and the quantitative experiments show that our method can improve the model.

cs.CL↗

arXiv2022

Automatic Analysis of Available Source Code of Top Artificial Intelligence Conference Papers

Source code is essential for researchers to reproduce the methods and replicate the results of artificial intelligence (AI) papers. Some organizations and researchers manually collect AI papers with available source code to contribute to the AI community. However, manual collection is a labor-intensive and time-consuming task. To address this issue, we propose a method to automatically identify papers with available source code and extract their source code repository URLs. With this method, we find that 20.5% of regular papers of 10 top AI conferences published from 2010 to 2019 are identified as papers with available source code and that 8.1% of these source code repositories are no longer accessible. We also create the XMU NLP Lab README Dataset, the largest dataset of labeled README files for source code document research. Through this dataset, we have discovered that quite a few README files have no installation instructions or usage tutorials provided. Further, a large-scale comprehensive statistical analysis is made for a general picture of the source code of AI conference papers. The proposed solution can also go beyond AI conference papers to analyze other scientific papers from both journals and conferences to shed light on more domains.

cs.SE↗

arXiv2021

Deep learning tackles single-cell analysis A survey of deep learning for scRNA-seq analysis

Since its selection as the method of the year in 2013, single-cell technologies have become mature enough to provide answers to complex research questions. With the growth of single-cell profiling technologies, there has also been a significant increase in data collected from single-cell profilings, resulting in computational challenges to process these massive and complicated datasets. To address these challenges, deep learning (DL) is positioning as a competitive alternative for single-cell analyses besides the traditional machine learning approaches. Here we present a processing pipeline of single-cell RNA-seq data, survey a total of 25 DL algorithms and their applicability for a specific step in the processing pipeline. Specifically, we establish a unified mathematical representation of all variational autoencoder, autoencoder, and generative adversarial network models, compare the training strategies and loss functions for these models, and relate the loss functions of these models to specific objectives of the data processing step. Such presentation will allow readers to choose suitable algorithms for their particular objective at each step in the pipeline. We envision that this survey will serve as an important information portal for learning the application of DL for scRNA-seq analysis and inspire innovative use of DL to address a broader range of new challenges in emerging multi-omics and spatial single-cell sequencing.

q-bio.GN↗

arXiv2019

Convolutional neural network models for cancer type prediction based on gene expression

Background Precise prediction of cancer types is vital for cancer diagnosis and therapy. Important cancer marker genes can be inferred through predictive model. Several studies have attempted to build machine learning models for this task however none has taken into consideration the effects of tissue of origin that can potentially bias the identification of cancer markers. Results In this paper, we introduced several Convolutional Neural Network (CNN) models that take unstructured gene expression inputs to classify tumor and non-tumor samples into their designated cancer types or as normal. Based on different designs of gene embeddings and convolution schemes, we implemented three CNN models: 1D-CNN, 2D-Vanilla-CNN, and 2D-Hybrid-CNN. The models were trained and tested on combined 10,340 samples of 33 cancer types and 731 matched normal tissues of The Cancer Genome Atlas (TCGA). Our models achieved excellent prediction accuracies (93.9-95.0%) among 34 classes (33 cancers and normal). Furthermore, we interpreted one of the models, known as 1D-CNN model, with a guided saliency technique and identified a total of 2,090 cancer markers (108 per class). The concordance of differential expression of these markers between the cancer type they represent and others is confirmed. In breast cancer, for instance, our model identified well-known markers, such as GATA3 and ESR1. Finally, we extended the 1D-CNN model for prediction of breast cancer subtypes and achieved an average accuracy of 88.42% among 5 subtypes. The codes can be found at https://github.com/chenlabgccri/CancerTypePrediction.

q-bio.GN↗

arXiv2019

Asynchronous "Events" are Better For Motion Estimation

Event-based camera is a bio-inspired vision sensor that records intensity changes (called event) asynchronously in each pixel. As an instance of event-based camera, Dynamic and Active-pixel Vision Sensor (DAVIS) combines a standard camera and an event-based camera. However, traditional models could not deal with the event stream asynchronously. To analyze the event stream asynchronously, most existing approaches accumulate events within a certain time interval and treat the accumulated events as a synchronous frame, which wastes the intensity change information and weakens the advantages of DAVIS. Therefore, in this paper, we present the first neural asynchronous approach to process event stream for event-based camera. Our method asynchronously extracts dynamic information from events by leveraging previous motion and critical features of gray-scale frames. To our best knowledge, this is the first neural asynchronous method to analyze event stream through a novel deep neural network. Extensive experiments demonstrate that our proposed model achieves remarkable improvements against the state-of-the-art baselines.

cs.CV↗

arXiv2018

GSAE: an autoencoder with embedded gene-set nodes for genomics functional characterization

Bioinformatics tools have been developed to interpret gene expression data at the gene set level, and these gene set based analyses improve the biologists' capability to discover functional relevance of their experiment design. While elucidating gene set individually, inter gene sets association is rarely taken into consideration. Deep learning, an emerging machine learning technique in computational biology, can be used to generate an unbiased combination of gene set, and to determine the biological relevance and analysis consistency of these combining gene sets by leveraging large genomic data sets. In this study, we proposed a gene superset autoencoder (GSAE), a multi-layer autoencoder model with the incorporation of a priori defined gene sets that retain the crucial biological features in the latent layer. We introduced the concept of the gene superset, an unbiased combination of gene sets with weights trained by the autoencoder, where each node in the latent layer is a superset. Trained with genomic data from TCGA and evaluated with their accompanying clinical parameters, we showed gene supersets' ability of discriminating tumor subtypes and their prognostic capability. We further demonstrated the biological relevance of the top component gene sets in the significant supersets. Using autoencoder model and gene superset at its latent layer, we demonstrated that gene supersets retain sufficient biological information with respect to tumor subtypes and clinical prognostic significance. Superset also provides high reproducibility on survival analysis and accurate prediction for cancer subtypes.

stat.ML↗

arXiv2018

Multi-Perspective Neural Architecture for Recommendation System

Currently, there starts a research trend to leverage neural architecture for recommendation systems. Though several deep recommender models are proposed, most methods are too simple to characterize users' complex preference. In this paper, for a fine-grain analysis, users' ratings are explained from multiple perspectives, based on which, we propose our neural architecture. Specifically, our model employs several sequential stages to encode the user and item into hidden representations. In one stage, the user and item are represented from multiple perspectives and in each perspective, the representations of user and item put attentions to each other. Last, we metric the output representations of final stage to approach the users' rating. Extensive experiments demonstrate that our method achieves substantial improvements against baselines.

cs.IR↗