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Yihao Ding

Publications and source records attributed to Yihao Ding.

At least 19 recordsLinked to original sources
arXiv2026

MineTRACE: An Evidence-Grounded Interactive Reasoning System for Mineral Prospectivity

Mineral exploration requires integrating heterogeneous geochemical, geophysical, and geological evidence, yet existing prospectivity systems often provide only opaque scores or heatmaps. We present MineTRACE, a web-based system for evidence-grounded exploration of eight commodities: Cu, Au, Ni, W, Sn, Co, Ta, and Mn. Users can explore prospectivity maps, query locations or regions, inspect supporting evidence, and interact through natural language. A transparent expert tree, informed by geological knowledge and known deposits, combines multi-source evidence into interpretable prospectivity scores. For a new location, the conversational assistant retrieves the score and supporting evidence from the analysis pipeline and presents them in natural language. The scorer achieves spatial AUC values of up to 0.917 across different test scenarios, while end-to-end evaluation assesses query accuracy and response grounding. MineTRACE makes public geoscience data easier to access, interpret, and verify, supporting more efficient and transparent mineral exploration.

cs.AI↗
arXiv2026

Locating Failure in Multi-Page Visually Rich Document Understanding: An Empirical Attribution

Multi-page visually-rich document understanding (MP-VRDU) requires managing evidence that is sparse, spread across pages, and often exceeds a model's context window. Prior work has produced competing, largely untested claims about how these systems should be built. We attribute incorrect answers to three failure modes, representation, selection, and reasoning, and isolate each over a multi-page document understanding dataset by intervening on one while holding the others fixed. We find that vision is necessary but does not replace text extraction, that missing pages bound accuracy while distractors cost little, and that reasoners fail to integrate evidence across pages even when it is fully supplied. Prompting can shift reasoning behaviour substantially, improving some outcomes at the expense of others. We translate these findings into guidance for building such systems under a fixed compute budget.

cs.AI↗
arXiv2026

MonteRET: AI Agent Enhancing Multimodal LLMs with Multi-granularity Knowledge Retrieval for Chest CT Report Generation

Automated chest CT report generation remains challenging because clinically faithful reporting requires both whole-volume understanding and accurate description of localized anatomical findings. Here we developed and retrospectively evaluated MonteRET, a region-aware retrieval-enhanced framework for generating chest CT findings sections. MonteRET integrates global CT features with region-level anatomical representations, retrieves clinically relevant knowledge using predicted medical conditions and region-level vision-language alignment, and refines initial reports through a knowledge-guided report rewriting agent. We trained our model on a public cohort with 24,128 CT scans from RadGenome-ChestCT. We evaluated MonteRET on the public RadGenome-ChestCT test set of 1,564 CT scans and an external cohort of 82 CT scans from NewYork-Presbyterian/Weill Cornell Medical Center. MonteRET improved report quality, semantic similarity, and clinical efficacy compared with a matched baseline and several state-of-the-art methods. Gains were most pronounced for recall, suggesting fewer omitted findings. Human expert evaluation by radiology residents also favored MonteRET.

cs.CV↗
arXiv2026

Disentangling Structure and Semantics: How Schema Representation Affects LLM-Based SQL Generation

LLM-based text-to-SQL pipelines read the database schema as text, which carries both structural cues (tables, keys, relationships) and semantic cues (table and column names); prior work has studied each axis in isolation, leaving open how they compare in magnitude and whether they substitute for one another. We present a controlled 6 times 3 factorial design crossing structural levels L_1--L_6 (from a denormalised wide table to a 3NF schema with foreign keys and explicit join paths) with semantic levels S_1--S_3 (anonymous, abbreviated, descriptive identifiers), evaluated on 397 corrected BIRD questions with identical gold queries throughout; we materialise 1NF and 2NF variants for nine BIRD databases to support the lowest structural levels. Across nine models from 0.5B to flagship scale we find an asymmetric substitution between the two axes, meaningful names compensate for missing structure but richer structural metadata does not recover performance when names are opaque, which reproduces in 8 of 9 databases and emerges with model scale (negligible below 3B). Within the structural axis the dominant lever is normalisation itself, not metadata layered on top of 3NF, suggesting that for current LLM-based text-to-SQL the practical bottleneck is semantic grounding rather than relational exposure.

cs.DB↗
arXiv2026

DocOCR-Eval: A Correction-Based Framework for OCR Tool Selection Without Ground Truth

Document parsing is a foundational step for document understanding tasks such as visual question answering and key information extraction, as it transforms unstructured scanned images into structured representations by extracting textual, visual, and layout information. While numerous Optical Character Recognition (OCR) engines and multimodal large language models (MLLMs) have been developed for this purpose, selecting an appropriate document parsing solution for a given document collection remains challenging, particularly in label-scarce settings. In this work, we conduct a systematic evaluation of text recognition performance across a diverse set of OCR engines and state-of-the-art MLLMs on multiple scanned document benchmarks spanning different domains and languages. Motivated by the limited contextual reasoning capabilities of many OCR engines and the high cost of manual annotations, we propose DocOCR-Eval, an annotation-free evaluation framework for automatic OCR assessment and selection. DocOCR-Eval employs a three-staged correction and ranking strategy to approximate annotation-based tool ordering without ground-truth labels. We show that aggregating across multiple MLLMs progressively improves alignment with annotation-based rankings. Extensive experiments further demonstrate that reliable OCR tool selection can be achieved in realistic, label-limited settings, providing practical guidance for deploying document parsing systems across diverse real-world document collections.

cs.LG↗
arXiv2026

MARCH: Multi-Agent Radiology Clinical Hierarchy for CT Report Generation

Automated 3D radiology report generation often suffers from clinical hallucinations and a lack of the iterative verification found in human practice. While recent Vision-Language Models (VLMs) have advanced the field, they typically operate as monolithic "black-box" systems without the collaborative oversight characteristic of clinical workflows. To address these challenges, we propose MARCH (Multi-Agent Radiology Clinical Hierarchy), a multi-agent framework that emulates the professional hierarchy of radiology departments and assigns specialized roles to distinct agents. MARCH utilizes a Resident Agent for initial drafting with multi-scale CT feature extraction, multiple Fellow Agents for retrieval-augmented revision, and an Attending Agent that orchestrates an iterative, stance-based consensus discourse to resolve diagnostic discrepancies. On the RadGenome-ChestCT dataset, MARCH significantly outperforms state-of-the-art baselines in both clinical fidelity and linguistic accuracy. Our work demonstrates that modeling human-like organizational structures enhances the reliability of AI in high-stakes medical domains.

cs.AI↗
arXiv2026

STIndex: A Context-Aware Multi-Dimensional Spatiotemporal Information Extraction System

Extracting structured knowledge from unstructured data still faces practical limitations: entity and event extraction pipelines remain brittle, knowledge graph construction requires costly ontology engineering, and cross-domain generalization is rarely production-ready. In contrast, space and time provide universal contextual anchors that naturally align heterogeneous information and benefit downstream tasks such as retrieval and reasoning. We introduce \textbf{STIndex}, an end-to-end system that structures unstructured content into a multidimensional spatiotemporal data warehouse. Users define domain-specific analysis dimensions with configurable hierarchies, while large language models perform context-aware extraction and grounding. \textbf{STIndex} integrates document-level memory, geocoding correction, and quality validation, and offers an interactive analytics dashboard for visualization, clustering, burst detection, and entity network analysis. In evaluation on a public health benchmark, \textbf{STIndex} improves spatiotemporal entity extraction F1 by 4.37\% (GPT-4o-mini) and 3.60\% (Qwen3-8B). A live demonstration and open-source code are available at https://stindex.ai4wa.com/dashboard.

cs.DB↗
arXiv2026

ToolTree: Efficient LLM Agent Tool Planning via Dual-Feedback Monte Carlo Tree Search and Bidirectional Pruning

Large Language Model (LLM) agents are increasingly applied to complex, multi-step tasks that require interaction with diverse external tools across various domains. However, current LLM agent tool planning methods typically rely on greedy, reactive tool selection strategies that lack foresight and fail to account for inter-tool dependencies. In this paper, we present ToolTree, a novel Monte Carlo tree search-inspired planning paradigm for tool planning. ToolTree explores possible tool usage trajectories using a dual-stage LLM evaluation and bidirectional pruning mechanism that enables the agent to make informed, adaptive decisions over extended tool-use sequences while pruning less promising branches before and after the tool execution. Empirical evaluations across both open-set and closed-set tool planning tasks on 4 benchmarks demonstrate that ToolTree consistently improves performance while keeping the highest efficiency, achieving an average gain of around 10\% compared to the state-of-the-art planning paradigm.

cs.AI↗
arXiv2026

GeoChemAD: Benchmarking Unsupervised Geochemical Anomaly Detection for Mineral Exploration

Geochemical anomaly detection plays a critical role in mineral exploration as deviations from regional geochemical baselines may indicate mineralization. Existing studies suffer from two key limitations: (1) single region scenarios which limit model generalizability; (2) proprietary datasets, which makes result reproduction unattainable. In this work, we introduce \textbf{GeoChemAD}, an open-source benchmark dataset compiled from government-led geological surveys, covering multiple regions, sampling sources, and target elements. The dataset comprises eight subsets representing diverse spatial scales and sampling conditions. To establish strong baselines, we reproduce and benchmark a range of unsupervised anomaly detection methods, including statistical models, generative and transformer-based approaches. Furthermore, we propose \textbf{GeoChemFormer}, a transformer-based framework that leverages self-supervised pretraining to learn target-element-aware geochemical representations for spatial samples. Extensive experiments demonstrate that GeoChemFormer consistently achieves superior and robust performance across all eight subsets, outperforming existing unsupervised methods in both anomaly detection accuracy and generalization capability. The proposed dataset and framework provide a foundation for reproducible research and future development in this direction.

cs.LG↗
arXiv2026

BRIDGE: Benchmark for multi-hop Reasoning In long multimodal Documents with Grounded Evidence

Multi-hop question answering (QA) is widely used to evaluate the reasoning capabilities of large language models, yet most benchmarks focus on final answer correctness and overlook intermediate reasoning, especially in long multimodal documents. We introduce BRIDGE, a benchmark for multi-hop reasoning over long scientific papers that require integrating evidence across text, tables, and figures. The dataset supports both chain-like and fan-out structures and provides explicit multi-hop reasoning annotations for step-level evaluation beyond answer accuracy. Experiments with state-of-the-art LLMs and multimodal retrieval-augmented generation (RAG) systems reveal systematic deficiencies in evidence aggregation and grounding that remain hidden under conventional answer-only evaluation. BRIDGE provides a targeted testbed for diagnosing reasoning failures in long multimodal documents.

cs.CL↗
arXiv2026

Diagnosing Causal Reasoning in Vision-Language Models via Structured Relevance Graphs

Large Vision-Language Models (LVLMs) achieve strong performance on visual question answering benchmarks, yet often rely on spurious correlations rather than genuine causal reasoning. Existing evaluations primarily assess the correctness of the answers, making it unclear whether failures arise from limited reasoning capability or from misidentifying causally relevant information. We introduce Vision-Language Causal Graphs (VLCGs), a structured, query-conditioned representation that explicitly encodes causally relevant objects, attributes, relations, and scene-grounded assumptions. Building on this representation, we present ViLCaR, a diagnostic benchmark comprising tasks for Causal Attribution, Causal Inference, and Question Answering, along with graph-aligned evaluation metrics that assess relevance identification beyond final answer accuracy. Experiments in state-of-the-art LVLMs show that injecting structured relevance information significantly improves attribution and inference consistency compared to zero-shot and standard in-context learning. These findings suggest that current limitations in LVLM causal reasoning stem primarily from insufficient structural guidance rather than a lack of reasoning capacity.

cs.AI↗
arXiv2026

Statistical Verification of Medium-Access Parameterization for Power-Grid Edge Ad Hoc Sensor Networks

The widespread deployment of power grid ad hoc sensor networks based on IEEE 802.15.4 raises reliability challenges when nodes selfishly adapt CSMA/CA parameters to maximize individual performance. Such behavior degrades reliability, energy efficiency, and compliance with strict grid constraints. Existing analytical and simulation approaches often fail to rigorously evaluate configurations under asynchronous, event-driven, and resource-limited conditions. We develop a verification framework that integrates stochastic timed hybrid automata with statistical model checking (SMC) with confidence bounds to formally assess CSMA/CA parameterizations under grid workloads. By encoding node- and system-level objectives in temporal logic and automating protocol screening via large-scale statistical evaluation, the method certifies Nash equilibrium strategies that remain robust to unilateral deviations. In a substation-scale scenario, the certified equilibrium improves utility from 0.862 to 0.914 and raises the delivery ratio from 89.5% to 93.2% when compared with an aggressive tuning baseline. Against a delivery-oriented baseline, it reduces mean per-cycle energy from 152.8 mJ to 149.2 mJ while maintaining comparable delivery performance. Certified configurations satisfy latency, reliability, and energy constraints with robustness coefficients above 0.97 and utility above 0.91.

cs.NI↗
arXiv2026

Docs2Synth: A Synthetic Data Trained Retriever Framework for Scanned Visually Rich Documents Understanding

Document understanding (VRDU) in regulated domains is particularly challenging, since scanned documents often contain sensitive, evolving, and domain specific knowledge. This leads to two major challenges: the lack of manual annotations for model adaptation and the difficulty for pretrained models to stay up-to-date with domain-specific facts. While Multimodal Large Language Models (MLLMs) show strong zero-shot abilities, they still suffer from hallucination and limited domain grounding. In contrast, discriminative Vision-Language Pre-trained Models (VLPMs) provide reliable grounding but require costly annotations to cover new domains. We introduce Docs2Synth, a synthetic-supervision framework that enables retrieval-guided inference for private and low-resource domains. Docs2Synth automatically processes raw document collections, generates and verifies diverse QA pairs via an agent-based system, and trains a lightweight visual retriever to extract domain-relevant evidence. During inference, the retriever collaborates with an MLLM through an iterative retrieval--generation loop, reducing hallucination and improving response consistency. We further deliver Docs2Synth as an easy-to-use Python package, enabling plug-and-play deployment across diverse real-world scenarios. Experiments on multiple VRDU benchmarks show that Docs2Synth substantially enhances grounding and domain generalization without requiring human annotations.

cs.AI↗
arXiv2025

A Disease-Aware Dual-Stage Framework for Chest X-ray Report Generation

Radiology report generation from chest X-rays is an important task in artificial intelligence with the potential to greatly reduce radiologists' workload and shorten patient wait times. Despite recent advances, existing approaches often lack sufficient disease-awareness in visual representations and adequate vision-language alignment to meet the specialized requirements of medical image analysis. As a result, these models usually overlook critical pathological features on chest X-rays and struggle to generate clinically accurate reports. To address these limitations, we propose a novel dual-stage disease-aware framework for chest X-ray report generation. In Stage~1, our model learns Disease-Aware Semantic Tokens (DASTs) corresponding to specific pathology categories through cross-attention mechanisms and multi-label classification, while simultaneously aligning vision and language representations via contrastive learning. In Stage~2, we introduce a Disease-Visual Attention Fusion (DVAF) module to integrate disease-aware representations with visual features, along with a Dual-Modal Similarity Retrieval (DMSR) mechanism that combines visual and disease-specific similarities to retrieve relevant exemplars, providing contextual guidance during report generation. Extensive experiments on benchmark datasets (i.e., CheXpert Plus, IU X-ray, and MIMIC-CXR) demonstrate that our disease-aware framework achieves state-of-the-art performance in chest X-ray report generation, with significant improvements in clinical accuracy and linguistic quality.

cs.CV↗
arXiv2025

PROPA: Toward Process-level Optimization in Visual Reasoning via Reinforcement Learning

Despite significant progress, Vision-Language Models (VLMs) still struggle with complex visual reasoning, where multi-step dependencies cause early errors to cascade through the reasoning chain. Existing post-training paradigms are limited: Supervised Fine-Tuning (SFT) relies on costly step-level annotations, while Reinforcement Learning with Verifiable Rewards (RLVR) methods like GRPO provide only sparse, outcome-level feedback, hindering stable optimization. We introduce PROPA (Process-level Reasoning Optimization with interleaved Policy Alignment), a novel framework that integrates Monte Carlo Tree Search (MCTS) with GRPO to generate dense, process-level rewards and optimize reasoning at each intermediate step without human annotations. To overcome the cold-start problem, PROPA interleaves GRPO updates with SFT, enabling the model to learn from both successful and failed reasoning trajectories. A Process Reward Model (PRM) is further trained to guide inference-time search, aligning the test-time search with the training signal. Across seven benchmarks and four VLM backbones, PROPA consistently outperforms both SFT- and RLVR-based baselines. It achieves up to 17.0% gains on in-domain tasks and 21.0% gains on out-of-domain tasks compared to existing state-of-the-art, establishing a strong reasoning and generalization capability for visual reasoning tasks. The code isavailable at: https://github.com/YanbeiJiang/PROPA.

cs.CV↗
arXiv2025

SynDoc: A Hybrid Discriminative-Generative Framework for Enhancing Synthetic Domain-Adaptive Document Key Information Extraction

Domain-specific Visually Rich Document Understanding (VRDU) presents significant challenges due to the complexity and sensitivity of documents in fields such as medicine, finance, and material science. Existing Large (Multimodal) Language Models (LLMs/MLLMs) achieve promising results but face limitations such as hallucinations, inadequate domain adaptation, and reliance on extensive fine-tuning datasets. This paper introduces SynDoc, a novel framework that combines discriminative and generative models to address these challenges. SynDoc employs a robust synthetic data generation workflow, using structural information extraction and domain-specific query generation to produce high-quality annotations. Through adaptive instruction tuning, SynDoc improves the discriminative model's ability to extract domain-specific knowledge. At the same time, a recursive inferencing mechanism iteratively refines the output of both models for stable and accurate predictions. This framework demonstrates scalable, efficient, and precise document understanding and bridges the gap between domain-specific adaptation and general world knowledge for document key information extraction tasks.

cs.CV↗
arXiv2025

DocHop-QA: Towards Multi-Hop Reasoning over Multimodal Document Collections

Despite rapid progress in large language models (LLMs), current QA benchmarks still overlook the core challenge of real-world scientific information seeking: synthesizing multimodal evidence scattered across multiple documents and structural formats. Existing QAs remain narrow in scope, relying on unimodal text and short-span reasoning that fail to capture the complexity of real information-seeking. We introduce DocHop-QA, a benchmark of 11,379 instances for evaluating multimodal, multi-document, multi-hop scientific QA. Built from publicly available PubMed articles, DocHop-QA incorporates textual passages, tables, and layout cues, enabling cross-document inference without explicit hyperlinks. To scale realistic QA construction, we develop an LLM-driven generation pipeline grounded in 11 scientific reasoning concepts, producing diverse and coherent question-answer pairs. To highlight the utility and versatility of the dataset, we propose a task-driven evaluation framework spanning four settings, including generative answering, multimodal evidence integration and structured index prediction. Experiments show that current models struggle with DocHop-QA's long-context, multi-evidence demands, establishing it as a rigorous testbed for advancing next-generation scientific QA systems.

cs.CL↗
arXiv2025

A Survey on MLLM-based Visually Rich Document Understanding: Methods, Challenges, and Emerging Trends

Visually Rich Document Understanding (VRDU) has become a pivotal area of research, driven by the need to automatically interpret documents that contain intricate visual, textual, and structural elements. Recently, Multimodal Large Language Models (MLLMs) have demonstrated significant promise in this domain, including both OCR-based and OCR-free approaches for information extraction from document images. This survey reviews recent advances in MLLM-based VRDU, highlighting emerging trends and promising research directions with a focus on two key aspects: (1) techniques for representing and integrating textual, visual, and layout features; (2) training paradigms, including pretraining, instruction tuning, and training strategies. Moreover, we address challenges such as data scarcity, handling multi-page and multilingual documents, and integrating emerging trends such as Retrieval-Augmented Generation and agentic frameworks. Our analysis offers a roadmap for advancing MLLM-based VRDU toward more scalable, reliable, and adaptable systems.

cs.CV↗