arXiv subjects

Yihong Chen

Publications and source records attributed to Yihong Chen.

At least 37 records · Page 2Linked to original sources

arXiv2024

Poisson quadrature method of moments for 2D kinetic equations with velocity of constant magnitude

This work is concerned with kinetic equations with velocity of constant magnitude. We propose a quadrature method of moments based on the Poisson kernel, called Poisson-EQMOM. The derived moment closure systems are well defined for all physically relevant moments and the resultant approximations of the distribution function converge as the number of moments goes to infinity. The convergence makes our method stand out from most existing moment methods. Moreover, we devise a delicate moment inversion algorithm. As an application, the Vicsek model is studied for overdamped active particles. Then the Poisson-EQMOM is validated with a series of numerical tests including spatially homogeneous, one-dimensional and two-dimensional problems.

physics.comp-ph↗

arXiv2024

Combining Hyperbolic Quadrature Method of Moments and Discrete-Velocity-Direction Models for Solving BGK-type Equations

This paper introduces the discrete-velocity-direction model (DVDM) in conjunction with the hyperbolic quadrature method of moments (HyQMOM) to develop a multidimensional spatial-temporal approximation of the BGK equation, termed DVD-HyQMOM. Serving as a multidimensional extension of HyQMOM, DVD-HyQMOM model achieves higher accuracy than other DVDM submodels, especially with an increased number of abscissas. The efficiency and effectiveness of this model are demonstrated through various numerical tests.

physics.comp-ph↗

arXiv2024

AsEP: Benchmarking Deep Learning Methods for Antibody-specific Epitope Prediction

Epitope identification is vital for antibody design yet challenging due to the inherent variability in antibodies. While many deep learning methods have been developed for general protein binding site prediction tasks, whether they work for epitope prediction remains an understudied research question. The challenge is also heightened by the lack of a consistent evaluation pipeline with sufficient dataset size and epitope diversity. We introduce a filtered antibody-antigen complex structure dataset, AsEP (Antibody-specific Epitope Prediction). AsEP is the largest of its kind and provides clustered epitope groups, allowing the community to develop and test novel epitope prediction methods and evaluate their generalisability. AsEP comes with an easy-to-use interface in Python and pre-built graph representations of each antibody-antigen complex while also supporting customizable embedding methods. Using this new dataset, we benchmark several representative general protein-binding site prediction methods and find that their performances fall short of expectations for epitope prediction. To address this, we propose a novel method, WALLE, which leverages both unstructured modeling from protein language models and structural modeling from graph neural networks. WALLE demonstrate up to 3-10X performance improvement over the baseline methods. Our empirical findings suggest that epitope prediction benefits from combining sequential features provided by language models with geometrical information from graph representations. This provides a guideline for future epitope prediction method design. In addition, we reformulate the task as bipartite link prediction, allowing convenient model performance attribution and interpretability. We open source our data and code at https://github.com/biochunan/AsEP-dataset.

cs.LG↗

arXiv2024

Multilingual Pretraining Using a Large Corpus Machine-Translated from a Single Source Language

English, as a very high-resource language, enables the pretraining of high-quality large language models (LLMs). The same cannot be said for most other languages, as leading LLMs still underperform for non-English languages, likely due to a gap in the quality and diversity of the available multilingual pretraining corpora. In this work, we find that machine-translated text from a single high-quality source language can contribute significantly to the pretraining of multilingual LLMs. We translate FineWeb-Edu, a high-quality English web dataset, into French, German, and Spanish, resulting in a final 300B-token dataset, which we call TransWeb-Edu, and pretrain a 1.3B-parameter model, CuatroLLM, from scratch on this dataset. Across five non-English reasoning tasks, we show that CuatroLLM matches or outperforms state-of-the-art multilingual models trained using closed data, such as Llama3.2 and Gemma2, despite using an order of magnitude less data, such as about 6% of the tokens used for Llama3.2's training. We further demonstrate that with additional domain-specific pretraining, amounting to less than 1% of TransWeb-Edu, CuatroLLM surpasses the state of the art in multilingual reasoning. To promote reproducibility, we release our corpus, models, and training pipeline under open licenses at hf.co/britllm/CuatroLLM.

cs.CL↗

arXiv2024

Jet Expansions of Residual Computation

We introduce a framework for expanding residual computational graphs using jets, operators that generalize truncated Taylor series. Our method provides a systematic approach to disentangle contributions of different computational paths to model predictions. In contrast to existing techniques such as distillation, probing, or early decoding, our expansions rely solely on the model itself and requires no data, training, or sampling from the model. We demonstrate how our framework grounds and subsumes logit lens, reveals a (super-)exponential path structure in the recursive residual depth and opens up several applications. These include sketching a transformer large language model with $n$-gram statistics extracted from its computations, and indexing the models' levels of toxicity knowledge. Our approach enables data-free analysis of residual computation for model interpretability, development, and evaluation.

cs.LG↗

arXiv2024

Dissipativeness of the hyperbolic quadrature method of moments for kinetic equations

This paper presents a dissipativeness analysis of a quadrature method of moments (called HyQMOM) for the one-dimensional BGK equation. The method has exhibited its good performance in numerous applications. However, its mathematical foundation has not been clarified. Here we present an analytical proof of the strict hyperbolicity of the HyQMOM-induced moment closure systems by introducing a polynomial-based closure technique. As a byproduct, a class of numerical schemes for the HyQMOM system is shown to be realizability preserving under CFL-type conditions. We also show that the system preserves the dissipative properties of the kinetic equation by verifying a certain structural stability condition. The proof uses a newly introduced affine invariance and the homogeneity of the HyQMOM and heavily relies on the theory of orthogonal polynomials associated with realizable moments, in particular, the moments of the standard normal distribution.

math.NA↗

arXiv2024

NAFRSSR: a Lightweight Recursive Network for Efficient Stereo Image Super-Resolution

Stereo image super-resolution (SR) refers to the reconstruction of a high-resolution (HR) image from a pair of low-resolution (LR) images as typically captured by a dual-camera device. To enhance the quality of SR images, most previous studies focused on increasing the number and size of feature maps and introducing complex and computationally intensive structures, resulting in models with high computational complexity. Here, we propose a simple yet efficient stereo image SR model called NAFRSSR, which is modified from the previous state-of-the-art model NAFSSR by introducing recursive connections and lightweighting the constituent modules. Our NAFRSSR model is composed of nonlinear activation free and group convolution-based blocks (NAFGCBlocks) and depth-separated stereo cross attention modules (DSSCAMs). The NAFGCBlock improves feature extraction and reduces number of parameters by removing the simple channel attention mechanism from NAFBlock and using group convolution. The DSSCAM enhances feature fusion and reduces number of parameters by replacing 1x1 pointwise convolution in SCAM with weight-shared 3x3 depthwise convolution. Besides, we propose to incorporate trainable edge detection operator into NAFRSSR to further improve the model performance. Four variants of NAFRSSR with different sizes, namely, NAFRSSR-Mobile (NAFRSSR-M), NAFRSSR-Tiny (NAFRSSR-T), NAFRSSR-Super (NAFRSSR-S) and NAFRSSR-Base (NAFRSSR-B) are designed, and they all exhibit fewer parameters, higher PSNR/SSIM, and faster speed than the previous state-of-the-art models. In particular, to the best of our knowledge, NAFRSSR-M is the lightest (0.28M parameters) and fastest (50 ms inference time) model achieving an average PSNR/SSIM as high as 24.657 dB/0.7622 on the benchmark datasets. Codes and models will be released at https://github.com/JNUChenYiHong/NAFRSSR.

eess.IV↗

arXiv2024

Improving Language Plasticity via Pretraining with Active Forgetting

Pretrained language models (PLMs) are today the primary model for natural language processing. Despite their impressive downstream performance, it can be difficult to apply PLMs to new languages, a barrier to making their capabilities universally accessible. While prior work has shown it possible to address this issue by learning a new embedding layer for the new language, doing so is both data and compute inefficient. We propose to use an active forgetting mechanism during pretraining, as a simple way of creating PLMs that can quickly adapt to new languages. Concretely, by resetting the embedding layer every K updates during pretraining, we encourage the PLM to improve its ability of learning new embeddings within a limited number of updates, similar to a meta-learning effect. Experiments with RoBERTa show that models pretrained with our forgetting mechanism not only demonstrate faster convergence during language adaptation but also outperform standard ones in a low-data regime, particularly for languages that are distant from English.

cs.CL↗

arXiv2023

TPTU-v2: Boosting Task Planning and Tool Usage of Large Language Model-based Agents in Real-world Systems

Large Language Models (LLMs) have demonstrated proficiency in addressing tasks that necessitate a combination of task planning and the usage of external tools that require a blend of task planning and the utilization of external tools, such as APIs. However, real-world complex systems present three prevalent challenges concerning task planning and tool usage: (1) The real system usually has a vast array of APIs, so it is impossible to feed the descriptions of all APIs to the prompt of LLMs as the token length is limited; (2) the real system is designed for handling complex tasks, and the base LLMs can hardly plan a correct sub-task order and API-calling order for such tasks; (3) Similar semantics and functionalities among APIs in real systems create challenges for both LLMs and even humans in distinguishing between them. In response, this paper introduces a comprehensive framework aimed at enhancing the Task Planning and Tool Usage (TPTU) abilities of LLM-based agents operating within real-world systems. Our framework comprises three key components designed to address these challenges: (1) the API Retriever selects the most pertinent APIs for the user task among the extensive array available; (2) LLM Finetuner tunes a base LLM so that the finetuned LLM can be more capable for task planning and API calling; (3) the Demo Selector adaptively retrieves different demonstrations related to hard-to-distinguish APIs, which is further used for in-context learning to boost the final performance. We validate our methods using a real-world commercial system as well as an open-sourced academic dataset, and the outcomes clearly showcase the efficacy of each individual component as well as the integrated framework.

cs.AI↗

arXiv2023

Mini-Model Adaptation: Efficiently Extending Pretrained Models to New Languages via Aligned Shallow Training

Prior work shows that it is possible to expand pretrained Masked Language Models (MLMs) to new languages by learning a new set of embeddings, while keeping the transformer body frozen. Despite learning a small subset of parameters, this approach is not compute-efficient, as training the new embeddings requires a full forward and backward pass over the entire model. We propose mini-model adaptation, a compute-efficient alternative that builds a shallow mini-model from a fraction of a large model's parameters. New language-specific embeddings can then be efficiently trained over the mini-model and plugged into the aligned large model for rapid cross-lingual transfer. We explore two approaches to learn mini-models: MiniJoint, which jointly pretrains the primary model and the mini-model using a single transformer with a secondary MLM head at a middle layer; and MiniPost, where we start from a regular pretrained model, build a mini-model by extracting and freezing a few layers, and learn a small number of parameters on top. Experiments on XNLI, MLQA and PAWS-X show that mini-model adaptation matches the performance of the standard approach using 2.3x less compute on average.

cs.CL↗

arXiv2023

Discrete-velocity-direction models of BGK-type with minimum entropy: II. Weighted models

In this series of works, we develop a discrete-velocity-direction model (DVDM) with collisions of BGK-type for simulating gas flows, where the molecular motion is confined to some prescribed directions but the speed is still a continuous variable in each orientation. In this article, we introduce a weighted function in each orientation when recovering the macroscopic parameters. Moreover, the internal molecular degrees of freedom are considered. With this weighted DVDM, we develop three submodels by incorporating the discrete velocity method, the Gaussian-extended quadrature method of moments and the Hermite spectral method in each direction. These spatial-time submodels are novel multidimensional versions corresponding to the three approaches. Numerical tests with a series of 1-D and 2-D flow problems show the efficiency of the weighted DVDM.

physics.comp-ph↗

arXiv2022

PointScatter: Point Set Representation for Tubular Structure Extraction

This paper explores the point set representation for tubular structure extraction tasks. Compared with the traditional mask representation, the point set representation enjoys its flexibility and representation ability, which would not be restricted by the fixed grid as the mask. Inspired by this, we propose PointScatter, an alternative to the segmentation models for the tubular structure extraction task. PointScatter splits the image into scatter regions and parallelly predicts points for each scatter region. We further propose the greedy-based region-wise bipartite matching algorithm to train the network end-to-end and efficiently. We benchmark the PointScatter on four public tubular datasets, and the extensive experiments on tubular structure segmentation and centerline extraction task demonstrate the effectiveness of our approach. Code is available at https://github.com/zhangzhao2022/pointscatter.

cs.CV↗

arXiv2022

Check and Link: Pairwise Lesion Correspondence Guides Mammogram Mass Detection

Detecting mass in mammogram is significant due to the high occurrence and mortality of breast cancer. In mammogram mass detection, modeling pairwise lesion correspondence explicitly is particularly important. However, most of the existing methods build relatively coarse correspondence and have not utilized correspondence supervision. In this paper, we propose a new transformer-based framework CL-Net to learn lesion detection and pairwise correspondence in an end-to-end manner. In CL-Net, View-Interactive Lesion Detector is proposed to achieve dynamic interaction across candidates of cross views, while Lesion Linker employs the correspondence supervision to guide the interaction process more accurately. The combination of these two designs accomplishes precise understanding of pairwise lesion correspondence for mammograms. Experiments show that CL-Net yields state-of-the-art performance on the public DDSM dataset and our in-house dataset. Moreover, it outperforms previous methods by a large margin in low FPI regime.

cs.CV↗

arXiv2022

Boosting 3D Object Detection via Object-Focused Image Fusion

3D object detection has achieved remarkable progress by taking point clouds as the only input. However, point clouds often suffer from incomplete geometric structures and the lack of semantic information, which makes detectors hard to accurately classify detected objects. In this work, we focus on how to effectively utilize object-level information from images to boost the performance of point-based 3D detector. We present DeMF, a simple yet effective method to fuse image information into point features. Given a set of point features and image feature maps, DeMF adaptively aggregates image features by taking the projected 2D location of the 3D point as reference. We evaluate our method on the challenging SUN RGB-D dataset, improving state-of-the-art results by a large margin (+2.1 mAP@0.25 and +2.3mAP@0.5). Code is available at https://github.com/haoy945/DeMF.

cs.CV↗

arXiv2021

Relation Prediction as an Auxiliary Training Objective for Improving Multi-Relational Graph Representations

Learning good representations on multi-relational graphs is essential to knowledge base completion (KBC). In this paper, we propose a new self-supervised training objective for multi-relational graph representation learning, via simply incorporating relation prediction into the commonly used 1vsAll objective. The new training objective contains not only terms for predicting the subject and object of a given triple, but also a term for predicting the relation type. We analyse how this new objective impacts multi-relational learning in KBC: experiments on a variety of datasets and models show that relation prediction can significantly improve entity ranking, the most widely used evaluation task for KBC, yielding a 6.1% increase in MRR and 9.9% increase in Hits@1 on FB15k-237 as well as a 3.1% increase in MRR and 3.4% in Hits@1 on Aristo-v4. Moreover, we observe that the proposed objective is especially effective on highly multi-relational datasets, i.e. datasets with a large number of predicates, and generates better representations when larger embedding sizes are used.

cs.CL↗

arXiv2021

Learnable Embedding Sizes for Recommender Systems

The embedding-based representation learning is commonly used in deep learning recommendation models to map the raw sparse features to dense vectors. The traditional embedding manner that assigns a uniform size to all features has two issues. First, the numerous features inevitably lead to a gigantic embedding table that causes a high memory usage cost. Second, it is likely to cause the over-fitting problem for those features that do not require too large representation capacity. Existing works that try to address the problem always cause a significant drop in recommendation performance or suffers from the limitation of unaffordable training time cost. In this paper, we proposed a novel approach, named PEP (short for Plug-in Embedding Pruning), to reduce the size of the embedding table while avoiding the drop of recommendation accuracy. PEP prunes embedding parameter where the pruning threshold(s) can be adaptively learned from data. Therefore we can automatically obtain a mixed-dimension embedding-scheme by pruning redundant parameters for each feature. PEP is a general framework that can plug in various base recommendation models. Extensive experiments demonstrate it can efficiently cut down embedding parameters and boost the base model's performance. Specifically, it achieves strong recommendation performance while reducing 97-99% parameters. As for the computation cost, PEP only brings an additional 20-30% time cost compared with base models. Codes are available at https://github.com/ssui-liu/learnable-embed-sizes-for-RecSys.

cs.LG↗

arXiv2020

RepPoints V2: Verification Meets Regression for Object Detection

Verification and regression are two general methodologies for prediction in neural networks. Each has its own strengths: verification can be easier to infer accurately, and regression is more efficient and applicable to continuous target variables. Hence, it is often beneficial to carefully combine them to take advantage of their benefits. In this paper, we take this philosophy to improve state-of-the-art object detection, specifically by RepPoints. Though RepPoints provides high performance, we find that its heavy reliance on regression for object localization leaves room for improvement. We introduce verification tasks into the localization prediction of RepPoints, producing RepPoints v2, which provides consistent improvements of about 2.0 mAP over the original RepPoints on the COCO object detection benchmark using different backbones and training methods. RepPoints v2 also achieves 52.1 mAP on COCO \texttt{test-dev} by a single model. Moreover, we show that the proposed approach can more generally elevate other object detection frameworks as well as applications such as instance segmentation. The code is available at https://github.com/Scalsol/RepPointsV2.

cs.CV↗

arXiv2020

You Impress Me: Dialogue Generation via Mutual Persona Perception

Despite the continuing efforts to improve the engagingness and consistency of chit-chat dialogue systems, the majority of current work simply focus on mimicking human-like responses, leaving understudied the aspects of modeling understanding between interlocutors. The research in cognitive science, instead, suggests that understanding is an essential signal for a high-quality chit-chat conversation. Motivated by this, we propose P^2 Bot, a transmitter-receiver based framework with the aim of explicitly modeling understanding. Specifically, P^2 Bot incorporates mutual persona perception to enhance the quality of personalized dialogue generation. Experiments on a large public dataset, Persona-Chat, demonstrate the effectiveness of our approach, with a considerable boost over the state-of-the-art baselines across both automatic metrics and human evaluations.

cs.CL↗