arXiv subjects

Yijing Xie

Publications and source records attributed to Yijing Xie.

7 recordsLinked to original sources

arXiv2026

Three-dimensional intraoperative light field fluorescence imaging system for PpIX-guided tumour resection

Conventional 2D fluorescence imaging in glioma surgery cannot separate intrinsic fluorophore strength from attenuation with depth, creating depth-intensity ambiguity that can compromise assessment of residual tumour and fluorescence based grading. This study develops and validates a dual mode light field imaging system that could capture 3D structure and depth corrected fluorescence in a single snapshot by adapting a commercial Lytro Illum camera. A custom 3D printed depth standard was used to optimise main lens focal length and to derive a grayscale - distance linearity from Lytro Desktop depth maps. CdSe/ZnS quantum dot targets and fluorescent brain phantoms were imaged to establish fluorescence intensity distance attenuation models and to recover intrinsic fluorescence. In system optimisation, the increasing FU strengthened grayscale depth linearity and achieved millimetre scale vertical resolution ($R^{2}$ > 0.95) for FU $\ge$ 60 mm. Higher concentration quantum dot wells of the fluorescent target showed consistent attenuation. In fluorescence mode, the deviations of distance estimations across six regions of a fluorescent brain phantom were 0.14 to 2.45% with intensity prediction errors from -11.73% to 6.08% based on the fluorescence intensity-distance model, enabling recovery of intrinsic quantum dot concentrations which are mimicking PpIX characteristics in glioma. This research supports light field imaging as a practical approach for depth resolved quantitative fluorescence and improved intraoperative tumour characterisation.

physics.med-ph↗

arXiv2026

Quantification of dual-state 5-ALA-induced PpIX fluorescence: Methodology and validation in tissue-mimicking phantoms

Quantification of protoporphyrin IX (PpIX) fluorescence in human brain tumours has the potential to significantly improve patient outcomes in neuro-oncology, but represents a formidable imaging challenge. Protoporphyrin is a biological molecule which interacts with the tissue micro-environment to form two photochemical states in glioma. Each exhibits markedly different quantum efficiencies, with distinct but overlapping emission spectra that also overlap with tissue autofluorescence. Fluorescence emission is known to be distorted by the intrinsic optical properties of tissue, coupled with marked intra-tumoural heterogeneity as a hallmark of glioma tumours. Existing quantitative fluorescence systems are developed and validated using simplified phantoms that do not simultaneously mimic the complex interactions between fluorophores and tissue optical properties or micro-environment. Consequently, existing systems risk introducing systematic errors into PpIX quantification when used in tissue. In this work, we introduce a novel pipeline for quantification of PpIX in glioma, which robustly differentiates both emission states from background autofluorescence without reliance on a priori spectral information, and accounts for variations in their quantum efficiency. Unmixed PpIX emission forms are then corrected for wavelength-dependent optical distortions and weighted for accurate quantification. Significantly, this pipeline is developed and validated using novel tissue-mimicking phantoms replicating the optical properties of glioma tissues and photochemical variability of PpIX fluorescence in glioma. Our workflow achieves strong correlation with ground-truth PpIX concentrations (R2 = 0.918+-0.002), demonstrating its potential for robust, quantitative PpIX fluorescence imaging in clinical settings.

physics.med-ph↗

arXiv2025

X-RAFT: Cross-Modal Non-Rigid Registration of Blue and White Light Neurosurgical Hyperspectral Images

Integration of hyperspectral imaging into fluorescence-guided neurosurgery has the potential to improve surgical decision making by providing quantitative fluorescence measurements in real-time. Quantitative fluorescence requires paired spectral data in fluorescence (blue light) and reflectance (white light) mode. Blue and white image acquisition needs to be performed sequentially in a potentially dynamic surgical environment. A key component to the fluorescence quantification process is therefore the ability to find dense cross-modal image correspondences between two hyperspectral images taken under these drastically different lighting conditions. We address this challenge with the introduction of X-RAFT, a Recurrent All-Pairs Field Transforms (RAFT) optical flow model modified for cross-modal inputs. We propose using distinct image encoders for each modality pair, and fine-tune these in a self-supervised manner using flow-cycle-consistency on our neurosurgical hyperspectral data. We show an error reduction of 36.6% across our evaluation metrics when comparing to a naive baseline and 27.83% reduction compared to an existing cross-modal optical flow method (CrossRAFT). Our code and models will be made publicly available after the review process.

cs.CV↗

arXiv2023

A comparative study of analytical models of diffuse reflectance in homogeneous biological tissues: Gelatin based phantoms and Monte Carlo experiments

Information about tissue oxygen saturation ($StO_2$) and other related important physiological parameters can be extracted from diffuse reflectance spectra measured through non-contact imaging. Three analytical optical reflectance models for homogeneous, semi-infinite, tissue have been proposed (Modified Beer-Lambert, Jacques 1999, Yudovsky 2009) but these have not been directly compared for tissue parameter extraction purposes. We compare these analytical models using Monte Carlo simulated diffuse reflectance spectra and controlled gelatin-based phantoms with measured diffuse reflectance spectra and known ground truth composition parameters. The Yudovsky model performed best against Monte Carlo simulations and measured spectra of tissue phantoms in terms of goodness of fit and parameter extraction accuracy followed closely by Jacques' model. In this study, Yudovsky's model appeared most robust, however our results demonstrated that both Yudovsky and Jacques models are suitable for modelling tissue that can be approximated as a single, homogeneous, semi-infinite slab.

physics.med-ph↗

arXiv2023

Synthetic white balancing for intra-operative hyperspectral imaging

Hyperspectral imaging shows promise for surgical applications to non-invasively provide spatially-resolved, spectral information. For calibration purposes, a white reference image of a highly-reflective Lambertian surface should be obtained under the same imaging conditions. Standard white references are not sterilizable, and so are unsuitable for surgical environments. We demonstrate the necessity for in situ white references and address this by proposing a novel, sterile, synthetic reference construction algorithm. The use of references obtained at different distances and lighting conditions to the subject were examined. Spectral and color reconstructions were compared with standard measurements qualitatively and quantitatively, using $ΔE$ and normalised RMSE respectively. The algorithm forms a composite image from a video of a standard sterile ruler, whose imperfect reflectivity is compensated for. The reference is modelled as the product of independent spatial and spectral components, and a scalar factor accounting for gain, exposure, and light intensity. Evaluation of synthetic references against ideal but non-sterile references is performed using the same metrics alongside pixel-by-pixel errors. Finally, intraoperative integration is assessed though cadaveric experiments. Improper white balancing leads to increases in all quantitative and qualitative errors. Synthetic references achieve median pixel-by-pixel errors lower than 6.5% and produce similar reconstructions and errors to an ideal reference. The algorithm integrated well into surgical workflow, achieving median pixel-by-pixel errors of 4.77%, while maintaining good spectral and color reconstruction.

eess.IV↗

arXiv2021

Methodology development and evaluation of optical properties characterisation of small size tissue samples

Integrating sphere (IS) techniques combined with an inverse adding doubling (IAD) algorithm have been widely used for determination of optical properties of ex vivo tissues. Semi-infinite samples are required in such cases. The aim of this study is to develop a methodology for calculating the optical absorption and reduced scattering of biological tissues of small size from IS measurements at 400-1800 nm. We propose a two-stage IAD algorithm to mitigate profound cross-talk effects in the estimation of the reduced scattering in the case of very high absorption. We developed a small sample adaptor kit to allow IS measurements of samples with small sizes using a commercial spectrophotometer. Results showed that: The two-stage IAD substantially eliminated the cross-talks in the reduced scattering spectra, thus rectifying absorption accordingly; and the small sized sample measurements led to systematically overestimated absorption values while the spectrum shape well preserved as compared to the normal port size measurements.

physics.optics↗

arXiv2021

Towards Resilience for Multi-Agent $QD$-Learning

This paper considers the multi-agent reinforcement learning (MARL) problem for a networked (peer-to-peer) system in the presence of Byzantine agents. We build on an existing distributed $Q$-learning algorithm, and allow certain agents in the network to behave in an arbitrary and adversarial manner (as captured by the Byzantine attack model). Under the proposed algorithm, if the network topology is $(2F+1)$-robust and up to $F$ Byzantine agents exist in the neighborhood of each regular agent, we establish the almost sure convergence of all regular agents' value functions to the neighborhood of the optimal value function of all regular agents. For each state, if the optimal $Q$-values of all regular agents corresponding to different actions are sufficiently separated, our approach allows each regular agent to learn the optimal policy for all regular agents.

eess.SY↗