arXiv subjects

Yijun Li

Publications and source records attributed to Yijun Li.

At least 55 records · Page 3Linked to original sources

arXiv2023

DeLELSTM: Decomposition-based Linear Explainable LSTM to Capture Instantaneous and Long-term Effects in Time Series

Time series forecasting is prevalent in various real-world applications. Despite the promising results of deep learning models in time series forecasting, especially the Recurrent Neural Networks (RNNs), the explanations of time series models, which are critical in high-stakes applications, have received little attention. In this paper, we propose a Decomposition-based Linear Explainable LSTM (DeLELSTM) to improve the interpretability of LSTM. Conventionally, the interpretability of RNNs only concentrates on the variable importance and time importance. We additionally distinguish between the instantaneous influence of new coming data and the long-term effects of historical data. Specifically, DeLELSTM consists of two components, i.e., standard LSTM and tensorized LSTM. The tensorized LSTM assigns each variable with a unique hidden state making up a matrix $\mathbf{h}_t$, and the standard LSTM models all the variables with a shared hidden state $\mathbf{H}_t$. By decomposing the $\mathbf{H}_t$ into the linear combination of past information $\mathbf{h}_{t-1}$ and the fresh information $\mathbf{h}_{t}-\mathbf{h}_{t-1}$, we can get the instantaneous influence and the long-term effect of each variable. In addition, the advantage of linear regression also makes the explanation transparent and clear. We demonstrate the effectiveness and interpretability of DeLELSTM on three empirical datasets. Extensive experiments show that the proposed method achieves competitive performance against the baseline methods and provides a reliable explanation relative to domain knowledge.

cs.LG↗

arXiv2023

Consistent Multimodal Generation via A Unified GAN Framework

We investigate how to generate multimodal image outputs, such as RGB, depth, and surface normals, with a single generative model. The challenge is to produce outputs that are realistic, and also consistent with each other. Our solution builds on the StyleGAN3 architecture, with a shared backbone and modality-specific branches in the last layers of the synthesis network, and we propose per-modality fidelity discriminators and a cross-modality consistency discriminator. In experiments on the Stanford2D3D dataset, we demonstrate realistic and consistent generation of RGB, depth, and normal images. We also show a training recipe to easily extend our pretrained model on a new domain, even with a few pairwise data. We further evaluate the use of synthetically generated RGB and depth pairs for training or fine-tuning depth estimators. Code will be available at https://github.com/jessemelpolio/MultimodalGAN.

cs.CV↗

arXiv2023

Neural Partial Differential Equations with Functional Convolution

We present a lightweighted neural PDE representation to discover the hidden structure and predict the solution of different nonlinear PDEs. Our key idea is to leverage the prior of ``translational similarity'' of numerical PDE differential operators to drastically reduce the scale of learning model and training data. We implemented three central network components, including a neural functional convolution operator, a Picard forward iterative procedure, and an adjoint backward gradient calculator. Our novel paradigm fully leverages the multifaceted priors that stem from the sparse and smooth nature of the physical PDE solution manifold and the various mature numerical techniques such as adjoint solver, linearization, and iterative procedure to accelerate the computation. We demonstrate the efficacy of our method by robustly discovering the model and accurately predicting the solutions of various types of PDEs with small-scale networks and training sets. We highlight that all the PDE examples we showed were trained with up to 8 data samples and within 325 network parameters.

cs.LG↗

arXiv2023

Zero-shot Image-to-Image Translation

Large-scale text-to-image generative models have shown their remarkable ability to synthesize diverse and high-quality images. However, it is still challenging to directly apply these models for editing real images for two reasons. First, it is hard for users to come up with a perfect text prompt that accurately describes every visual detail in the input image. Second, while existing models can introduce desirable changes in certain regions, they often dramatically alter the input content and introduce unexpected changes in unwanted regions. In this work, we propose pix2pix-zero, an image-to-image translation method that can preserve the content of the original image without manual prompting. We first automatically discover editing directions that reflect desired edits in the text embedding space. To preserve the general content structure after editing, we further propose cross-attention guidance, which aims to retain the cross-attention maps of the input image throughout the diffusion process. In addition, our method does not need additional training for these edits and can directly use the existing pre-trained text-to-image diffusion model. We conduct extensive experiments and show that our method outperforms existing and concurrent works for both real and synthetic image editing.

cs.CV↗

arXiv2022

ASGARD: A Single-cell Guided pipeline to Aid Repurposing of Drugs

Intercellular heterogeneity is a major obstacle to successful precision medicine. Single-cell RNA sequencing (scRNA-seq) technology has enabled in-depth analysis of intercellular heterogeneity in various diseases. However, its full potential for precision medicine has yet to be reached. Towards this, we propose a new drug recommendation system called: A Single-cell Guided Pipeline to Aid Repurposing of Drugs (ASGARD). ASGARD defines a novel drug score predicting drugs by considering all cell clusters to address the intercellular heterogeneity within each patient. We tested ASGARD on multiple diseases, including breast cancer, acute lymphoblastic leukemia, and coronavirus disease 2019 (COVID-19). On single-drug therapy, ASGARD shows significantly better average accuracy (AUC of 0.92) compared to two other bulk-cell-based drug repurposing methods (AUC of 0.80 and 0.76). It is also considerably better (AUC of 0.82) than other cell cluster level predicting methods (AUC of 0.67 and 0.55). In addition, ASGARD is also validated by the drug response prediction method TRANSACT with Triple-Negative-Breast-Cancer patient samples. Many top-ranked drugs are either approved by FDA or in clinical trials treating corresponding diseases. In silico cell-type specific drop-out experiments using triple-negative breast cancers show the importance of T cells in the tumor microenvironment in affecting drug predictions. In conclusion, ASGARD is a promising drug repurposing recommendation tool guided by single-cell RNA-seq for personalized medicine. ASGARD is free for educational use at https://github.com/lanagarmire/ASGARD.

q-bio.QM↗

arXiv2022

Contrastive Learning for Diverse Disentangled Foreground Generation

We introduce a new method for diverse foreground generation with explicit control over various factors. Existing image inpainting based foreground generation methods often struggle to generate diverse results and rarely allow users to explicitly control specific factors of variation (e.g., varying the facial identity or expression for face inpainting results). We leverage contrastive learning with latent codes to generate diverse foreground results for the same masked input. Specifically, we define two sets of latent codes, where one controls a pre-defined factor (``known''), and the other controls the remaining factors (``unknown''). The sampled latent codes from the two sets jointly bi-modulate the convolution kernels to guide the generator to synthesize diverse results. Experiments demonstrate the superiority of our method over state-of-the-arts in result diversity and generation controllability.

cs.CV↗

arXiv2022

Large-Scale Integrated Flexible Tactile Sensor Array for Sensitive Smart Robotic Touch

In the long pursuit of smart robotics, it has been envisioned to empower robots with human-like senses, especially vision and touch. While tremendous progress has been made in image sensors and computer vision over the past decades, the tactile sense abilities are lagging behind due to the lack of large-scale flexible tactile sensor array with high sensitivity, high spatial resolution, and fast response. In this work, we have demonstrated a 64x64 flexible tactile sensor array with a record-high spatial resolution of 0.9 mm (equivalently 28.2 pixels per inch), by integrating a high-performance piezoresistive film (PRF) with a large-area active matrix of carbon nanotube thin-film transistors. PRF with self-formed microstructures exhibited high pressure-sensitivity of ~385 kPa-1 for MWCNTs concentration of 6%, while the 14% one exhibited fast response time of ~3 ms, good linearity, broad detection range beyond 1400 kPa, and excellent cyclability over 3000 cycles. Using this fully integrated tactile sensor array, the footprint maps of an artificial honeybee were clearly identified. Furthermore, we hardware-implemented a smart tactile system by integrating the PRF-based sensor array with a memristor-based computing-in-memory chip to record and recognize handwritten digits and Chinese calligraphy, achieving high classification accuracies of 98.8% and 97.3% in hardware, respectively. The integration of sensor networks with deep learning hardware may enable edge or near-sensor computing with significantly reduced power consumption and latency. Our work could pave the road to building large-scale intelligent sensor networks for next-generation smart robotics.

cond-mat.mtrl-sci↗

arXiv2022

3D-FM GAN: Towards 3D-Controllable Face Manipulation

3D-controllable portrait synthesis has significantly advanced, thanks to breakthroughs in generative adversarial networks (GANs). However, it is still challenging to manipulate existing face images with precise 3D control. While concatenating GAN inversion and a 3D-aware, noise-to-image GAN is a straight-forward solution, it is inefficient and may lead to noticeable drop in editing quality. To fill this gap, we propose 3D-FM GAN, a novel conditional GAN framework designed specifically for 3D-controllable face manipulation, and does not require any tuning after the end-to-end learning phase. By carefully encoding both the input face image and a physically-based rendering of 3D edits into a StyleGAN's latent spaces, our image generator provides high-quality, identity-preserved, 3D-controllable face manipulation. To effectively learn such novel framework, we develop two essential training strategies and a novel multiplicative co-modulation architecture that improves significantly upon naive schemes. With extensive evaluations, we show that our method outperforms the prior arts on various tasks, with better editability, stronger identity preservation, and higher photo-realism. In addition, we demonstrate a better generalizability of our design on large pose editing and out-of-domain images.

cs.CV↗

arXiv2022

Self-adaptive randomized constructive heuristics for the multi-item capacitated lot sizing problem

The Capacitated Lot-Sizing Problem (CLSP) and its variants are important and challenging optimization problems. Constructive heuristics are known to be the most intuitive and fastest methods for finding good feasible solutions for the CLSPs and therefore are often used as a subroutine in building more sophisticated exact or metaheuristic approaches. Classical constructive heuristics, such as period-by-period heuristics and lot elimination heuristics, are widely used by researchers. This paper introduces four perturbation strategies to the period-by-period and lot elimination heuristics to further improve the solution quality. We propose a new procedure to automatically adjust the parameters of the randomized period-by-period (RPP) heuristics. The procedure is proved to offer better solutions with reduced computation times by improving time-consuming parameter tuning phase. Combinations of the self-adaptive RPP heuristics with Tabu search and lot elimination heuristics are tested to be effective. Computational experiments provided high-quality solutions with a 0.88% average optimality gap on benchmark instances of 12 periods and 12 items, and an optimality gap within 1.2% for the instances with 24 periods and 24 items.

math.OC↗

arXiv2022

Spatially-Adaptive Multilayer Selection for GAN Inversion and Editing

Existing GAN inversion and editing methods work well for aligned objects with a clean background, such as portraits and animal faces, but often struggle for more difficult categories with complex scene layouts and object occlusions, such as cars, animals, and outdoor images. We propose a new method to invert and edit such complex images in the latent space of GANs, such as StyleGAN2. Our key idea is to explore inversion with a collection of layers, spatially adapting the inversion process to the difficulty of the image. We learn to predict the "invertibility" of different image segments and project each segment into a latent layer. Easier regions can be inverted into an earlier layer in the generator's latent space, while more challenging regions can be inverted into a later feature space. Experiments show that our method obtains better inversion results compared to the recent approaches on complex categories, while maintaining downstream editability. Please refer to our project page at https://www.cs.cmu.edu/~SAMInversion.

cs.CV↗

arXiv2022

Emerging Artificial Intelligence Applications in Spatial Transcriptomics Analysis

Spatial transcriptomics (ST) has advanced significantly in the last few years. Such advancement comes with the urgent need for novel computational methods to handle the unique challenges of ST data analysis. Many artificial intelligence (AI) methods have been developed to utilize various machine learning and deep learning techniques for computational ST analysis. This review provides a comprehensive and up-to-date survey of current AI methods for ST analysis.

cs.LG↗

arXiv2022

Computational Methods for Single-Cell Multi-Omics Integration and Alignment

Recently developed technologies to generate single-cell genomic data have made a revolutionary impact in the field of biology. Multi-omics assays offer even greater opportunities to understand cellular states and biological processes. However, the problem of integrating different -omics data with very different dimensionality and statistical properties remains quite challenging. A growing body of computational tools are being developed for this task, leveraging ideas ranging from machine translation to the theory of networks and representing a new frontier on the interface of biology and data science. Our goal in this review paper is to provide a comprehensive, up-to-date survey of computational techniques for the integration of multi-omics and alignment of multiple modalities of genomics data in the single cell research field.

q-bio.GN↗

arXiv2021

Collaging Class-specific GANs for Semantic Image Synthesis

We propose a new approach for high resolution semantic image synthesis. It consists of one base image generator and multiple class-specific generators. The base generator generates high quality images based on a segmentation map. To further improve the quality of different objects, we create a bank of Generative Adversarial Networks (GANs) by separately training class-specific models. This has several benefits including -- dedicated weights for each class; centrally aligned data for each model; additional training data from other sources, potential of higher resolution and quality; and easy manipulation of a specific object in the scene. Experiments show that our approach can generate high quality images in high resolution while having flexibility of object-level control by using class-specific generators.

cs.CV↗

arXiv2021

IMAGINE: Image Synthesis by Image-Guided Model Inversion

We introduce an inversion based method, denoted as IMAge-Guided model INvErsion (IMAGINE), to generate high-quality and diverse images from only a single training sample. We leverage the knowledge of image semantics from a pre-trained classifier to achieve plausible generations via matching multi-level feature representations in the classifier, associated with adversarial training with an external discriminator. IMAGINE enables the synthesis procedure to simultaneously 1) enforce semantic specificity constraints during the synthesis, 2) produce realistic images without generator training, and 3) give users intuitive control over the generation process. With extensive experimental results, we demonstrate qualitatively and quantitatively that IMAGINE performs favorably against state-of-the-art GAN-based and inversion-based methods, across three different image domains (i.e., objects, scenes, and textures).

cs.CV↗

arXiv2021

Few-shot Image Generation via Cross-domain Correspondence

Training generative models, such as GANs, on a target domain containing limited examples (e.g., 10) can easily result in overfitting. In this work, we seek to utilize a large source domain for pretraining and transfer the diversity information from source to target. We propose to preserve the relative similarities and differences between instances in the source via a novel cross-domain distance consistency loss. To further reduce overfitting, we present an anchor-based strategy to encourage different levels of realism over different regions in the latent space. With extensive results in both photorealistic and non-photorealistic domains, we demonstrate qualitatively and quantitatively that our few-shot model automatically discovers correspondences between source and target domains and generates more diverse and realistic images than previous methods.

cs.CV↗

arXiv2021

Rethinking and Improving the Robustness of Image Style Transfer

Extensive research in neural style transfer methods has shown that the correlation between features extracted by a pre-trained VGG network has a remarkable ability to capture the visual style of an image. Surprisingly, however, this stylization quality is not robust and often degrades significantly when applied to features from more advanced and lightweight networks, such as those in the ResNet family. By performing extensive experiments with different network architectures, we find that residual connections, which represent the main architectural difference between VGG and ResNet, produce feature maps of small entropy, which are not suitable for style transfer. To improve the robustness of the ResNet architecture, we then propose a simple yet effective solution based on a softmax transformation of the feature activations that enhances their entropy. Experimental results demonstrate that this small magic can greatly improve the quality of stylization results, even for networks with random weights. This suggests that the architecture used for feature extraction is more important than the use of learned weights for the task of style transfer.

cs.CV↗

arXiv2021

Content-Aware GAN Compression

Generative adversarial networks (GANs), e.g., StyleGAN2, play a vital role in various image generation and synthesis tasks, yet their notoriously high computational cost hinders their efficient deployment on edge devices. Directly applying generic compression approaches yields poor results on GANs, which motivates a number of recent GAN compression works. While prior works mainly accelerate conditional GANs, e.g., pix2pix and CycleGAN, compressing state-of-the-art unconditional GANs has rarely been explored and is more challenging. In this paper, we propose novel approaches for unconditional GAN compression. We first introduce effective channel pruning and knowledge distillation schemes specialized for unconditional GANs. We then propose a novel content-aware method to guide the processes of both pruning and distillation. With content-awareness, we can effectively prune channels that are unimportant to the contents of interest, e.g., human faces, and focus our distillation on these regions, which significantly enhances the distillation quality. On StyleGAN2 and SN-GAN, we achieve a substantial improvement over the state-of-the-art compression method. Notably, we reduce the FLOPs of StyleGAN2 by 11x with visually negligible image quality loss compared to the full-size model. More interestingly, when applied to various image manipulation tasks, our compressed model forms a smoother and better disentangled latent manifold, making it more effective for image editing.

cs.CV↗

arXiv2020

Few-shot Image Generation with Elastic Weight Consolidation

Few-shot image generation seeks to generate more data of a given domain, with only few available training examples. As it is unreasonable to expect to fully infer the distribution from just a few observations (e.g., emojis), we seek to leverage a large, related source domain as pretraining (e.g., human faces). Thus, we wish to preserve the diversity of the source domain, while adapting to the appearance of the target. We adapt a pretrained model, without introducing any additional parameters, to the few examples of the target domain. Crucially, we regularize the changes of the weights during this adaptation, in order to best preserve the information of the source dataset, while fitting the target. We demonstrate the effectiveness of our algorithm by generating high-quality results of different target domains, including those with extremely few examples (e.g., <10). We also analyze the performance of our method with respect to some important factors, such as the number of examples and the dissimilarity between the source and target domain.

cs.CV↗