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Yimin Huang

Publications and source records attributed to Yimin Huang.

21 records · Page 2Linked to original sources

Ultrafast Chemical Imaging by Widefield Photothermal Sensing of Infrared Absorption

Infrared (IR) imaging has become a viable tool for visualizing various chemical bonds in a specimen. The performance, however, is limited in terms of spatial resolution and imaging speed. Here, instead of measuring the loss of the IR beam, we utilize a pulsed visible light for a high-throughput, widefield sensing of the transient photothermal effect induced by absorption of single mid-IR pulses. To extract such transient signals, we built a virtual lock-in camera synchronized to the visible probe and IR light pulses with precisely-controlled delays, allowing sub-microsecond temporal resolution determined by the probe pulse width. Our widefield photothermal sensing (WPS) microscope enabled chemical imaging at a speed up to 1250 frames per second, with high spectral fidelity, and offering sub-micron spatial resolution. With the capability of imaging living cells and nanometer-scale polymer films, WPS microscopy opens a new way for high-throughput characterization of biological and material specimens.

physics.optics↗

Methods for scoring the collective effect of SNPs: Minor alleles of common SNPs quantitatively affect traits/diseases and are under both positive and negative selection

Most common SNPs are popularly assumed to be neutral. We here developed novel methods to examine in animal models and humans whether extreme amount of minor alleles (MAs) carried by an individual may represent extreme trait values and common diseases. We analyzed panels of genetic reference populations and identified the MAs in each panel and the MA content (MAC) that each strain carried. We also analyzed 21 published GWAS datasets of human diseases and identified the MAC of each case or control. MAC was nearly linearly linked to quantitative variations in numerous traits in model organisms, including life span, tumor susceptibility, learning and memory, sensitivity to alcohol and anti-psychotic drugs, and two correlated traits poor reproductive fitness and strong immunity. Similarly, in Europeans or European Americans, enrichment of MAs of fast but not slow evolutionary rate was linked to autoimmune and numerous other diseases, including type 2 diabetes, Parkinson's disease, psychiatric disorders, alcohol and cocaine addictions, cancer, and less life span. Therefore, both high and low MAC correlated with extreme values in many traits, indicating stabilizing selection on most MAs. The methods here are broadly applicable and may help solve the missing heritability problem in complex traits and diseases.

q-bio.GN↗

Pearl's Calculus of Intervention Is Complete

This paper is concerned with graphical criteria that can be used to solve the problem of identifying casual effects from nonexperimental data in a causal Bayesian network structure, i.e., a directed acyclic graph that represents causal relationships. We first review Pearl's work on this topic [Pearl, 1995], in which several useful graphical criteria are presented. Then we present a complete algorithm [Huang and Valtorta, 2006b] for the identifiability problem. By exploiting the completeness of this algorithm, we prove that the three basic do-calculus rules that Pearl presents are complete, in the sense that, if a causal effect is identifiable, there exists a sequence of applications of the rules of the do-calculus that transforms the causal effect formula into a formula that only includes observational quantities.

cs.AI↗