arXiv subjects

Ying Lin

Publications and source records attributed to Ying Lin.

25 records · Page 2Linked to original sources

arXiv2021

COVID-19 Literature Knowledge Graph Construction and Drug Repurposing Report Generation

To combat COVID-19, both clinicians and scientists need to digest vast amounts of relevant biomedical knowledge in scientific literature to understand the disease mechanism and related biological functions. We have developed a novel and comprehensive knowledge discovery framework, COVID-KG to extract fine-grained multimedia knowledge elements (entities and their visual chemical structures, relations, and events) from scientific literature. We then exploit the constructed multimedia knowledge graphs (KGs) for question answering and report generation, using drug repurposing as a case study. Our framework also provides detailed contextual sentences, subfigures, and knowledge subgraphs as evidence.

cs.CL↗

arXiv2021

Personalized Entity Resolution with Dynamic Heterogeneous Knowledge Graph Representations

The growing popularity of Virtual Assistants poses new challenges for Entity Resolution, the task of linking mentions in text to their referent entities in a knowledge base. Specifically, in the shopping domain, customers tend to use implicit utterances (e.g., "organic milk") rather than explicit names, leading to a large number of candidate products. Meanwhile, for the same query, different customers may expect different results. For example, with "add milk to my cart", a customer may refer to a certain organic product, while some customers may want to re-order products they regularly purchase. To address these issues, we propose a new framework that leverages personalized features to improve the accuracy of product ranking. We first build a cross-source heterogeneous knowledge graph from customer purchase history and product knowledge graph to jointly learn customer and product embeddings. After that, we incorporate product, customer, and history representations into a neural reranking model to predict which candidate is most likely to be purchased for a specific customer. Experiments show that our model substantially improves the accuracy of the top ranked candidates by 24.6% compared to the state-of-the-art product search model.

cs.CL↗

arXiv2020

Cost-efficiency trade-offs of the human brain network revealed by a multiobjective evolutionary algorithm

It is widely believed that the formation of brain network structure is under the pressure of optimal trade-off between reducing wiring cost and promoting communication efficiency. However, the question of whether this trade-off exists in empirical human brain networks and, if so, how it takes effect is still not well understood. Here, we employed a multiobjective evolutionary algorithm to directly and quantitatively explore the cost-efficiency trade-off in human brain networks. Using this algorithm, we generated a population of synthetic networks with optimal but diverse cost-efficiency trade-offs. It was found that these synthetic networks could not only reproduce a large portion of connections in the empirical brain networks but also embed a resembling small-world structure. Moreover, the synthetic and empirical brain networks were found similar in terms of the spatial arrangement of hub regions and the modular structure, which are two important topological features widely assumed to be outcomes of cost-efficiency trade-offs. The synthetic networks had high robustness against random attack as the empirical brain networks did. Additionally, we also revealed some differences of the synthetic networks from the empirical brain networks, including lower segregated processing capacity and weaker robustness against targeted attack. These findings provide direct and quantitative evidence that the structure of human brain networks is indeed largely influenced by optimal cost-efficiency trade-offs. We also suggest that some additional factors (e.g., segregated processing capacity) might jointly determine the network organization with cost and efficiency.

q-bio.NC↗

arXiv2019

A Grounded Unsupervised Universal Part-of-Speech Tagger for Low-Resource Languages

Unsupervised part of speech (POS) tagging is often framed as a clustering problem, but practical taggers need to \textit{ground} their clusters as well. Grounding generally requires reference labeled data, a luxury a low-resource language might not have. In this work, we describe an approach for low-resource unsupervised POS tagging that yields fully grounded output and requires no labeled training data. We find the classic method of Brown et al. (1992) clusters well in our use case and employ a decipherment-based approach to grounding. This approach presumes a sequence of cluster IDs is a `ciphertext' and seeks a POS tag-to-cluster ID mapping that will reveal the POS sequence. We show intrinsically that, despite the difficulty of the task, we obtain reasonable performance across a variety of languages. We also show extrinsically that incorporating our POS tagger into a name tagger leads to state-of-the-art tagging performance in Sinhalese and Kinyarwanda, two languages with nearly no labeled POS data available. We further demonstrate our tagger's utility by incorporating it into a true `zero-resource' variant of the Malopa (Ammar et al., 2016) dependency parser model that removes the current reliance on multilingual resources and gold POS tags for new languages. Experiments show that including our tagger makes up much of the accuracy lost when gold POS tags are unavailable.

cs.CL↗

arXiv2018

Collaborative Alerts Ranking for Anomaly Detection

Given a large number of low-level heterogeneous categorical alerts from an anomaly detection system, how to characterize complex relationships between different alerts, filter out false positives, and deliver trustworthy rankings and suggestions to end users? This problem is motivated by and generalized from applications in enterprise security and attack scenario reconstruction. While existing techniques focus on either reconstructing abnormal scenarios or filtering out false positive alerts, it can be more advantageous to consider the two perspectives simultaneously in order to improve detection accuracy and better understand anomaly behaviors. In this paper, we propose CAR, a collaborative alerts ranking framework that exploits both temporal and content correlations from heterogeneous categorical alerts. CAR first builds a tree-based model to capture both short-term correlations and long-term dependencies in each alert sequence, which identifies abnormal action sequences. Then, an embedding-based model is employed to learn the content correlations between alerts via their heterogeneous categorical attributes. Finally, by incorporating both temporal and content dependencies into one optimization framework, CAR ranks both alerts and their corresponding alert patterns. Our experiments, using real-world enterprise monitoring data and real attacks launched by professional hackers, show that CAR can accurately identify true positive alerts and successfully reconstruct attack scenarios at the same time.

cs.CR↗

arXiv2017

Acquiring Background Knowledge to Improve Moral Value Prediction

In this paper, we address the problem of detecting expressions of moral values in tweets using content analysis. This is a particularly challenging problem because moral values are often only implicitly signaled in language, and tweets contain little contextual information due to length constraints. To address these obstacles, we present a novel approach to automatically acquire background knowledge from an external knowledge base to enrich input texts and thus improve moral value prediction. By combining basic text features with background knowledge, our overall context-aware framework achieves performance comparable to a single human annotator. To the best of our knowledge, this is the first attempt to incorporate background knowledge for the prediction of implicit psychological variables in the area of computational social science.

cs.CL↗

arXiv2016

GID: Graph-based Intrusion Detection on Massive Process Traces for Enterprise Security Systems

Intrusion detection system (IDS) is an important part of enterprise security system architecture. In particular, anomaly-based IDS has been widely applied to detect abnormal process behaviors that deviate from the majority. However, such abnormal behavior usually consists of a series of low-level heterogeneous events. The gap between the low-level events and the high-level abnormal behaviors makes it hard to infer which single events are related to the real abnormal activities, especially considering that there are massive "noisy" low-level events happening in between. Hence, the existing work that focus on detecting single entities/events can hardly achieve high detection accuracy. Different from previous work, we design and implement GID, an efficient graph-based intrusion detection technique that can identify abnormal event sequences from a massive heterogeneous process traces with high accuracy. GID first builds a compact graph structure to capture the interactions between different system entities. The suspiciousness or anomaly score of process paths is then measured by leveraging random walk technique to the constructed acyclic directed graph. To eliminate the score bias from the path length, the Box-Cox power transformation based approach is introduced to normalize the anomaly scores so that the scores of paths of different lengths have the same distribution. The efficiency of suspicious path discovery is further improved by the proposed optimization scheme. We fully implement our GID algorithm and deploy it into a real enterprise security system, and it greatly helps detect the advanced threats, and optimize the incident response. Executing GID on system monitoring datasets showing that GID is efficient (about 2 million records per minute) and accurate (higher than 80% in terms of detection rate).

cs.CR↗