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Ying Liu

Publications and source records attributed to Ying Liu.

At least 181 records · Page 10Linked to original sources
arXiv2022

RTN: Reinforced Transformer Network for Coronary CT Angiography Vessel-level Image Quality Assessment

Coronary CT Angiography (CCTA) is susceptible to various distortions (e.g., artifacts and noise), which severely compromise the exact diagnosis of cardiovascular diseases. The appropriate CCTA Vessel-level Image Quality Assessment (CCTA VIQA) algorithm can be used to reduce the risk of error diagnosis. The primary challenges of CCTA VIQA are that the local part of coronary that determines final quality is hard to locate. To tackle the challenge, we formulate CCTA VIQA as a multiple-instance learning (MIL) problem, and exploit Transformer-based MIL backbone (termed as T-MIL) to aggregate the multiple instances along the coronary centerline into the final quality. However, not all instances are informative for final quality. There are some quality-irrelevant/negative instances intervening the exact quality assessment(e.g., instances covering only background or the coronary in instances is not identifiable). Therefore, we propose a Progressive Reinforcement learning based Instance Discarding module (termed as PRID) to progressively remove quality-irrelevant/negative instances for CCTA VIQA. Based on the above two modules, we propose a Reinforced Transformer Network (RTN) for automatic CCTA VIQA based on end-to-end optimization. Extensive experimental results demonstrate that our proposed method achieves the state-of-the-art performance on the real-world CCTA dataset, exceeding previous MIL methods by a large margin.

cs.MM↗
arXiv2022

Physically Explainable CNN for SAR Image Classification

Integrating the special electromagnetic characteristics of Synthetic Aperture Radar (SAR) in deep neural networks is essential in order to enhance the explainability and physics awareness of deep learning. In this paper, we first propose a novel physically explainable convolutional neural network for SAR image classification, namely physics guided and injected learning (PGIL). It comprises three parts: (1) explainable models (XM) to provide prior physics knowledge, (2) physics guided network (PGN) to encode the knowledge into physics-aware features, and (3) physics injected network (PIN) to adaptively introduce the physics-aware features into classification pipeline for label prediction. A hybrid Image-Physics SAR dataset format is proposed for evaluation, with both Sentinel-1 and Gaofen-3 SAR data being experimented. The results show that the proposed PGIL substantially improve the classification performance in case of limited labeled data compared with the counterpart data-driven CNN and other pre-training methods. Additionally, the physics explanations are discussed to indicate the interpretability and the physical consistency preserved in the predictions. We deem the proposed method would promote the development of physically explainable deep learning in SAR image interpretation field.

eess.IV↗
arXiv2022

Self-localized topological states in three dimensions

Three-dimensional (3D) topological materials exhibit much richer phenomena than their lower-dimensional counterparts. Here, we propose self-localized topological states (i.e., topological solitons) in a 3D nonlinear photonic Chern insulator. Despite being in the bulk and self-localized in all 3D, the topological solitons at high-symmetry points K and K' rotate in the same direction, due to the underlying topology. Specifically, under the saturable nonlinearity the solitons are stable over a broad frequency range. Our results highlight how topology and nonlinearity interact with each other and can be extended to other 3D topological systems.

physics.optics↗
arXiv2022

RCMNet: A deep learning model assists CAR-T therapy for leukemia

Acute leukemia is a type of blood cancer with a high mortality rate. Current therapeutic methods include bone marrow transplantation, supportive therapy, and chemotherapy. Although a satisfactory remission of the disease can be achieved, the risk of recurrence is still high. Therefore, novel treatments are demanding. Chimeric antigen receptor-T (CAR-T) therapy has emerged as a promising approach to treat and cure acute leukemia. To harness the therapeutic potential of CAR-T cell therapy for blood diseases, reliable cell morphological identification is crucial. Nevertheless, the identification of CAR-T cells is a big challenge posed by their phenotypic similarity with other blood cells. To address this substantial clinical challenge, herein we first construct a CAR-T dataset with 500 original microscopy images after staining. Following that, we create a novel integrated model called RCMNet (ResNet18 with CBAM and MHSA) that combines the convolutional neural network (CNN) and Transformer. The model shows 99.63% top-1 accuracy on the public dataset. Compared with previous reports, our model obtains satisfactory results for image classification. Although testing on the CAR-T cells dataset, a decent performance is observed, which is attributed to the limited size of the dataset. Transfer learning is adapted for RCMNet and a maximum of 83.36% accuracy has been achieved, which is higher than other SOTA models. The study evaluates the effectiveness of RCMNet on a big public dataset and translates it to a clinical dataset for diagnostic applications.

eess.IV↗
arXiv2022

Recent Progress of Heterostructures Based on Two Dimensional Materials and Wide Bandgap Semiconductors

Recent progress in the synthesis and assembly of two-dimensional (2D) materials has laid the foundation for various applications of atomically thin layer films. These 2D materials possess rich and diverse properties such as layer-dependent band gaps, interesting spin degrees of freedom, and variable crystal structures. They exhibit broad application prospects in micro-nano devices. In the meantime, the wide bandgap semiconductors (WBS) with an elevated breakdown voltage, high mobility, and high thermal conductivity have shown important applications in high-frequency microwave devices, high-temperature and high-power electronic devices. Beyond the study on single 2D materials or WBS materials, the multi-functional 2D/WBS heterostructures can promote the carrier transport at the interface, potentially providing novel physical phenomena and applications, and improving the performance of electronic and optoelectronic devices. In this review, we overview the advantages of the heterostructures of 2D materials and WBS materials, and introduce the construction methods of 2D/WBS heterostructures. Then, we present the diversity and recent progress in the applications of 2D/WBS heterostructures, including photodetectors, photocatalysis, sensors, and energy related devices. Finally, we put forward the current challenges of 2D/WBS heterostructures and propose the promising research directions in the future.

physics.app-ph↗
arXiv2022

Remiod: Reference-based Controlled Multiple Imputation of Longitudinal Binary and Ordinal Outcomes with non-ignorable missingness

Missing data on response variables are common in clinical studies. Corresponding to the uncertainty of missing mechanism, theoretical frameworks on controlled imputation have been developed. In practice, it is recommended to conduct a statistically valid analysis under the primary assumptions on missing data, followed by sensitivity analysis under alternative assumptions to assess the robustness of results. Due to the availability of software, controlled multiple imputation (MI) procedures, including delta-based and reference-based approaches, have become popular for analyzing continuous variables under missing-not-at-random assumptions. Similar tools, however, still limit application of these methods to categorical data. In this paper, we introduce the R package \textbf{remiod}, which utilizes the Bayesian framework to perform imputation in regression models on binary and ordinal outcomes. Following outlining theoretical backgrounds, usage and features of \textbf{remiod} are described and illustrated using examples.

stat.ME↗
arXiv2022

Universal and Efficient p-Doping of Organic Semiconductors by Electrophilic Attack of Cations

Doping is of great importance to tailor the electrical properties of semiconductors. However, the present doping methodologies for organic semiconductors (OSCs) are either inefficient or can only apply to a small number of OSCs, seriously limiting their general application. Herein, we reveal a novel p-doping mechanism by investigating the interactions between the dopant trityl cation and poly(3-hexylthiophene) (P3HT). It is found that electrophilic attack of the trityl cations on thiophenes results in the formation of alkylated ions that induce electron transfer from neighboring P3HT chains, resulting in p-doping. This unique p-doping mechanism can be employed to dope various OSCs including those with high ionization energy (IE=5.8 eV). Moreover, this doping mechanism endows trityl cation with strong doping ability, leading to polaron yielding efficiency of 100 % and doping efficiency of over 80 % in P3HT. The discovery and elucidation of this novel doping mechanism not only points out that strong electrophiles are a class of efficient p-dopants for OSCs, but also provides new opportunities towards highly efficient doping of OSCs.

cond-mat.mtrl-sci↗
arXiv2022

PACSan: Enforcing Memory Safety Based on ARM PA

Memory safety is a key security property that stops memory corruption vulnerabilities. Existing sanitizers enforce checks and catch such bugs during development and testing. However, they either provide partial memory safety or have overwhelmingly high performance overheads. Our novel sanitizer PACSan enforces spatial and temporal memory safety with no false positives at low performance overheads. PACSan removes the majority of the overheads involved in pointer tracking by sealing metadata in pointers through ARM PA (Pointer Authentication), and performing the memory safety checks when pointers are dereferenced. We have developed a prototype of PACSan and systematically evaluated its security and performance on the Magma, Juliet, Nginx, and SPEC CPU2017 test suites, respectively. In our evaluation, PACSan shows no false positives together with negligible false negatives, while introducing stronger security guarantees and lower performance overheads than state-of-the-art sanitizers, including HWASan, ASan, SoftBound+CETS, Memcheck, LowFat, and PTAuth. Specifically, PACSan has 0.84x runtime overhead and 1.92x memory overhead on average. Compared to the widely deployed ASan, PACSan has no false positives and much fewer false negatives and reduces 7.172% runtime overheads and 89.063%memory overheads.

cs.CR↗
arXiv2022

The Exponential-Time Complexity of the complex weighted #CSP

In this paper, I consider a fine-grained dichotomy of Boolean counting constraint satisfaction problem (#CSP), under the exponential time hypothesis of counting version (#ETH). Suppose $\mathscr{F}$ is a finite set of algebraic complex-valued functions defined on Boolean domain. When $\mathscr{F}$ is a subset of either two special function sets, I prove that #CSP($\mathscr{F}$) is polynomial-time solvable, otherwise it can not be computed in sub-exponential time unless #ETH fails. I also improve the result by proving the same dichotomy holds for #CSP with bounded degree (every variable appears at most constant constraints), even for #R$_3$-CSP. An important preparation before proving the result is to argue that pinning (two special unary functions $[1,0]$ and $[0,1]$ are used to reduce arity) can also keep the sub-exponential lower bound of a Boolean #CSP problem. I discuss this issue by utilizing some common methods in proving #P-hardness of counting problems. The proof illustrates the internal correlation among these commonly used methods.

cs.CC↗
arXiv2022

Stock Movement Prediction Based on Bi-typed Hybrid-relational Market Knowledge Graph via Dual Attention Networks

Stock Movement Prediction (SMP) aims at predicting listed companies' stock future price trend, which is a challenging task due to the volatile nature of financial markets. Recent financial studies show that the momentum spillover effect plays a significant role in stock fluctuation. However, previous studies typically only learn the simple connection information among related companies, which inevitably fail to model complex relations of listed companies in the real financial market. To address this issue, we first construct a more comprehensive Market Knowledge Graph (MKG) which contains bi-typed entities including listed companies and their associated executives, and hybrid-relations including the explicit relations and implicit relations. Afterward, we propose DanSmp, a novel Dual Attention Networks to learn the momentum spillover signals based upon the constructed MKG for stock prediction. The empirical experiments on our constructed datasets against nine SOTA baselines demonstrate that the proposed DanSmp is capable of improving stock prediction with the constructed MKG.

q-fin.ST↗
arXiv2022

Exploring Native Atomic Defects in NiTe2

Nickel ditelluride (NiTe2), a new discovered type-II Dirac semimetal whose Dirac node lies close to its Fermi level, is expected to exhibit exotic phenomena including Lifshitz transition and superconductivity. As we know, defects are inevitable for transition metal dichalcogenides and have significant impacts on the optical and electronic properties. However, the systematic study of defects in NiTe2 is still lack. Here, by using high-resolution scanning tunneling microscopy combined with first-principles calculations, the point defects including the vacancy, intercalation and antisite defects in NiTe2 are systematically investigated. We identified five main types native defects and revealed that the growth condition could affect the type of native defects. By controlling the ratio of ingredient during synthesis, the types of point defects are expected to be manipulated, especially antisite defects. Additionally, we find native defects could slightly dope the topological surface states. Our results provide a facile way to manipulate defects for future optimizing the electronic properties of NiTe2 and other related materials.

cond-mat.mtrl-sci↗
arXiv2021

Topological quantum catalyst: the case of two-dimensional traversing nodal line states associated with high catalytic performance for hydrogen evolution reaction

Topological quantum catalysts (TQCs), where metallic surface states from nontrivial band topology serve as the mechanism to favor heterogeneous catalysis processes, have been well demonstrated in three dimensional (3D) examples but have been rarely discussed in 2D scale. Here, we develop a design scheme to realize 2D TQCs with showing traversing nodal line at the Brillouin zone boundary, large Fermi arc on the edge, and nearly zero Gibbs free energy (ΔGH*) for hydrogen evolution reaction (HER). We demonstrate the 2D Cu2C2N4 sheet is a such example. The material manifests an open nodal line traversing the whole k-path S-Y. It shows a long Fermi arc that spans the entire edge boundary, which is robust against spin-orbit coupling and the H adsorption. As the result, the edge of Cu2C2N4 sheet is relatively active for HER catalysis with possessing a ΔGH* as low as 0.10 eV, which is comparable with that of Pt and superior to other traditional catalysts and 3D TQCs as well. Our work offers an effective route to develop high performance HER catalysis without containing noble metals by utilizing 2D TQCs with traversing nodal line.

cond-mat.mtrl-sci↗
arXiv2021

Theoretical realization of hybrid Weyl state and associated high catalytic performance for hydrogen evolution in NiSi

For electrochemical hydrogen evolution reaction (HER), developing high-performance catalysts without containing precious metals has been a major research focus in the current. Herein, we show the feasibility of HER catalytic enhancement in Ni-based materials based on topological engineering from hybrid Weyl states. Via a high-throughput computational screening from 140 000 materials, we identify a chiral compound NiSi is a hybrid Weyl semimetal (WSM) with showing bulk type-I and type-II Weyl nodes and long surface Fermi arcs near the Fermi level. Sufficient evidences verify that topological charge carriers participate in the HER process, and make the certain surface of NiSi highly active with the Gibbs free energy nearly zero (0.07 eV), which is even lower than Pt and locates on the top of the volcano plots. This work opens up a new routine to develop no-precious-metal-containing HER catalysts via topological engineering, rather than traditional defect engineering, doping engineering, or strain engineering.

cond-mat.mtrl-sci↗
arXiv2021

CSSR: A Context-Aware Sequential Software Service Recommendation Model

We propose a novel software service recommendation model to help users find their suitable repositories in GitHub. Our model first designs a novel context-induced repository graph embedding method to leverage rich contextual information of repositories to alleviate the difficulties caused by the data sparsity issue. It then leverages sequence information of user-repository interactions for the first time in the software service recommendation field. Specifically, a deep-learning based sequential recommendation technique is adopted to capture the dynamics of user preferences. Comprehensive experiments have been conducted on a large dataset collected from GitHub against a list of existing methods. The results illustrate the superiority of our method in various aspects.

cs.IR↗
arXiv2021

Phase-dependent epitaxy for antimonene growth on silver substrate

Antimonene is a novel two-dimensional topological semiconductor material with strain driven tunable electronic structure for future electronic and spintronic devices, but the growth of clean antimonene is not fully understood. In this work, the growth process of antimonene on silver substrate has been studied in detail by using density functional theory and particle swarm optimization algorithms. The results show that, in addition to the experimental reported flat honeycomb and $β$-phase antimonene, $α$-phase antimonene was observed to be able to grow on thus substrates, and the phases of antimonene were deeply dependent on the reconstructed supercells and surface alloys. It has been demonstrated that the surface alloys on substrate play an active role in the growth of antimonene.

cond-mat.mtrl-sci↗
arXiv2021

Automated assessment of disease severity of COVID-19 using artificial intelligence with synthetic chest CT

Background: Triage of patients is important to control the pandemic of coronavirus disease 2019 (COVID-19), especially during the peak of the pandemic when clinical resources become extremely limited. Purpose: To develop a method that automatically segments and quantifies lung and pneumonia lesions with synthetic chest CT and assess disease severity in COVID-19 patients. Materials and Methods: In this study, we incorporated data augmentation to generate synthetic chest CT images using public available datasets (285 datasets from "Lung Nodule Analysis 2016"). The synthetic images and masks were used to train a 2D U-net neural network and tested on 203 COVID-19 datasets to generate lung and lesion segmentations. Disease severity scores (DL: damage load; DS: damage score) were calculated based on the segmentations. Correlations between DL/DS and clinical lab tests were evaluated using Pearson's method. A p-value < 0.05 was considered as statistical significant. Results: Automatic lung and lesion segmentations were compared with manual annotations. For lung segmentation, the median values of dice similarity coefficient, Jaccard index and average surface distance, were 98.56%, 97.15% and 0.49 mm, respectively. The same metrics for lesion segmentation were 76.95%, 62.54% and 2.36 mm, respectively. Significant (p << 0.05) correlations were found between DL/DS and percentage lymphocytes tests, with r-values of -0.561 and -0.501, respectively. Conclusion: An AI system that based on thoracic radiographic and data augmentation was proposed to segment lung and lesions in COVID-19 patients. Correlations between imaging findings and clinical lab tests suggested the value of this system as a potential tool to assess disease severity of COVID-19.

eess.IV↗
arXiv2021

Monolayer RhB4: half-auxeticity and almost ideal spin-orbit Dirac point semimetal

Structural-property relationship, the connection between materials' structures and their properties, is central to the materials research. Especially at reduced dimensions, novel structural motifs often generate unique physical properties.Motivated by a recent work reporting a novel half auxetic effect in monolayer PdB4 with a hypercoordinated structure, here, we extensively explore similar 2D transition metal boride structures MB4 with M covering 3d and 4d elements.Our investigation screens out one stable candidate, the monolayer RhB4. We find that monolayer RhB4 also shows half auxeticity, i.e., the material always expands in a lateral in-plane direction in response to an applied strain in the other direction, regardless of whether the strain is positive or negative.We show that this special mechanical character is intimately tied to the hypercoordinated structure with the M\c{opyright}B8 structural motif. Furthermore, regarding electronic properties, monolayer RhB4 is found to be the first example of an almost ideal 2D spin-orbit Dirac point semimetal.The low-energy band structure is clean, with a pair of fourfold degenerate Dirac points robust under spin-orbit coupling located close to the Fermi level. These Dirac points are enforced by the nonsymmorphic space group symmetry which is also determined by the lattice structure. Our work deepens the fundamental understanding of structural-property relationship in reduced dimensions. The half auxeticity and the spin-orbit Dirac points will make monolayer RhB4 a promising platform for nanomechanics and nanoelectronics applications.

cond-mat.mtrl-sci↗