arXiv subjects

Yingjin Ma

Publications and source records attributed to Yingjin Ma.

16 recordsLinked to original sources

arXiv2026

A quantum chemistry dataset containing ground-state and conical-intersection structures of 260k molecules

Conical intersections play central roles in photoinduced reactions. However, comprehensive conical-intersection datasets that could advance our understanding of excited-state reaction processes remain scarce. To address this gap, we constructed a quantum chemistry dataset containing ground-state and conical-intersection structures of small molecules (up to ten heavy atoms: C, N, O, F). Ground-state geometries were optimized at the semi-empirical OM2 level, with single-point energies calculated at the OM2/MRCI level. Conical-intersection geometries and energies were also computed at the OM2/MRCI level. This dataset is designed to enable a deep integration of photochemistry with machine learning, bridging the gap between photochemical insight and data-driven approaches.

physics.chem-ph↗

arXiv2026

Multiconfiguration Pair-Density Functional Theory Calculations of Low-lying States of Complex Chemical Systems with Quantum Computers

Accurately describing strong electron correlation in complex systems remains a prominent challenge in computational chemistry as near-term quantum algorithms treating total correlation often require prohibitively deep circuits. Here we present a hybrid strategy combining the Variational Quantum Eigensolver with Multiconfiguration Pair-Density Functional Theory to efficiently decouple correlation effects. This approach confines static correlation to a compact multireference quantum state while recovering dynamic correlation through a classical on-top density functional using reduced-density information. By enabling self-consistent orbital optimization, the method significantly reduces quantum resource overheads without sacrificing physical rigor. We demonstrate chemical accuracy on standard benchmarks by reproducing C$_2$ equilibrium bond lengths and benzene excitation energies with mean absolute errors of 0.006 {\AA} and 0.048 eV respectively. Most notably, for the strongly correlated Cr$_2$ dimer requiring a large complete active space (48e, 42o), the framework yields a bound potential-energy curve and recovers qualitative dissociation behavior despite realistic hardware noise. These results establish that separating correlation types provides a practical route to reliable predictions on near-term quantum hardware.

cs.CE↗

arXiv2025

Obtaining Accurate Ground-State Properties on Near-term Quantum Devices

Accurate ground-state calculations on noisy quantum computers are fundamentally limited by restricted ansatz expressivity and unavoidable hardware errors. We introduce a hybrid-quantum classical framework that simultaneously addresses these challenges. Our method systematically purifies noisy two electron reduced density matrices from quantum devices by enforcing N-representability conditions through efficient semidefinite programming, guided by a norm-based distance constraint to the experimental data. To implement this constraint, we develop a hardware efficient calibration protocol based on Clifford circuits. We demonstrate near full configuration interaction accuracy for ground-state energies of H2, LiH, and H4, and compute precise scattering intensities for C6H8 on noisy hardware. This approach surpasses conventional methods by simultaneously overcoming both ansatz limitations and hardware noise, establishing a scalable route to quantum advantage and marking a critical step toward reliable simulations of complex molecularnsystems on noisy devices.

quant-ph↗

arXiv2024

Fault-tolerant Quantum Chemical Calculations with Improved Machine-Learning Models

Easy and effective usage of computational resources is crucial for scientific calculations. Following our recent work of machine-learning (ML) assisted scheduling optimization [Ref: J. Comput. Chem. 2023, 44, 1174], we further propose 1) the improve ML models for the better predictions of computational loads, and as such, more elaborate load-balancing calculations can be expected; 2) the idea of coded computation, i.e. the integration of gradient coding, in order to introduce fault tolerance during the distributed calculations; and 3) their applications together with re-normalized exciton model with time-dependent density functional theory (REM-TDDFT) for calculating the excited states. Illustrated benchmark calculations include P38 protein, and solvent model with one or several excitable centers. The results show that the improved ML-assisted coded calculations can further improve the load-balancing and cluster utilization, and owing primarily profit in fault tolerance that aiming at the automated quantum chemical calculations for both ground and excited states.

physics.chem-ph↗

arXiv2020

A Forecasting System of Computational Time of DFT/TDDFT Calculations under the Multiverse ansatz via Machine Learning and Cheminformatics

A top-level designed forecasting system for predicting computational times of density-functional theory (DFT)/time-dependent density-functional theory (TDDFT) calculations is presented. The computational time is assumed as the intrinsic property for the molecule. Basing on this assumption, the forecasting system is established using the "reinforced concrete", which combines the cheminformatics, several machine-learning (ML) models, and the framework of many-world interpretation (MWI) in multiverse ansatz. Herein, the cheminformatics is used to recognize the topological structure of molecules, the ML/AI models are used to build the relationships between topology and computational cost, and the MWI framework is used to hold various combinations of DFT functionals and basis sets in DFT/TDDFT calculations. Calculated results of molecules from DrugBank dataset show that 1) it can give quantitative predictions of computational costs, typical mean relative errors can be less than 0.2 for DFT/TDDFT calculations with derivations of 25% using the exactly pre-trained ML models, 2) it can also be employed to various combinations of DFT functional and basis set cases without exactly pre-trained ML models, while only slightly enlarge predicting errors.

physics.comp-ph↗

arXiv2020

Portably parallel construction of a CI wave function from a matrix-product state using the Charm++ framework

The constructions of configuration interaction (CI) expansions from a matrix-product state (MPS) involves numerous matrix operations and the skillful sampling of important configurations when in a huge Hilbert space. In this work, we present an efficient procedure for constructing CI expansions from MPS using the Charm++ parallel programming framework, upon which automatic load balancing and object migration facilities can be employed. This procedure was employed in the MPS-to-CI utility (Moritz et al., J. Chem. Phys. 2007, 126, 224109), sampling-reconstructed complete active space algorithm (SR-CAS, Boguslawski et al., J. Chem. Phys. 2011, 134, 224101) and entanglement-driven genetic algorithm (EDGA, Luo et al., J. Chem. Theory Comput. 2017, 13, 4699-4710). It enhances productivity and allows the sampling programs evolve to their population-expansion versions (e.g., EDGA with population expansion [PE-EDGA]). Examples of 1,2-dioxetanone and firefly dioxetanone anion (FDO-) molecules demonstrated that 1) the procedure could be flexibly employed among various multi-core architectures; 2) the parallel efficiencies could be persistently improved simply by increasing the proportion of asynchronous executions; 3) PE-EDGA could construct a CAS-type CI wave function from a huge Hilbert space, with 0.9952 CI completeness and 96.7% correlation energy via ~1.66x10^6 configurations (only 0.0000028% of the total configurations) of a bi-radical state of FDO- molecule using the full valence active space within a few hours.

physics.comp-ph↗

arXiv2020

Multi-Reference Epstein-Nesbet Perturbation Theory with Density Matrix Renormalization Group Reference Wavefunction

The accurate electronic structure calculation for strongly correlated chemical systems requires an adequate description for both static and dynamic electron correlation, and is a persistent challenge for quantum chemistry. In order to account for static and dynamic electron correlations accurately and efficiently, in this work we propose a new method by integrating the density matrix renormalization group (DMRG) method and multi-reference second-order Epstein-Nesbet perturbation theory (ENPT2) with a selected configuration interaction (SCI) approximation. Compared with previous DMRG-based dynamic correlation methods, the DMRG-ENPT2 method extends the range of applicability, allowing us to efficiently calculate systems with very large active space beyond 30 orbitals. We demonstrate this by performing calculations on H$_2$S with an active space of (16e, 15o), hexacene with an active space of (26e, 26o) and 2D H$_{64}$ square lattice with an active space of (42e, 42o).

cond-mat.str-el↗

arXiv2019

Approximate analytical gradients and nonadiabatic couplings for the state-average density matrix renormalization group self-consistent field method

We present an approximate scheme for analytical gradients and nonadiabatic couplings for calculating state-average density matrix renormalization group self-consistent-field wavefunction. Our formalism follows closely the state-average complete active space self-consistent-field (SA-CASSCF) \emph{ansatz}, which employs a Lagrangian, and the corresponding Lagrange multipliers are obtained from a solution of the coupled-perturbed CASSCF (CP-CASSCF) equations. We introduce a definition of the matrix product state (MPS) Lagrange multipliers based on a single-site tensor in a mixed-canonical form of the MPS, such that a sweep procedure is avoided in the solution of the CP-CASSCF equations. We apply our implementation to the optimization of a conical intersection in 1,2-dioxetanone, where we are able to fully reproduce the SA-CASSCF result up to arbitrary accuracy.

physics.chem-ph↗

arXiv2018

Externally-Contracted Multi-Reference Configuration Interaction Method Using a DMRG Reference Wave Function

The recent development of the density matrix renormalization group (DMRG) method in multireference quantum chemistry makes it practical to evaluate static correlation in a large active space, while dynamic correlation provides a critical correction to the DMRG reference for strong-correlated systems and is usually obtained using multi-reference perturbation (MRPT) or configuration interaction (MRCI) methods with internal contraction (ic) approximation. These methods can use active space scalable to relatively larger size references than has previously been possible. However, they are still hardly applicable to systems with active space larger than 30 orbitals because of high computation and storage costs of high-order reduced density matrices (RDMs) and the number of virtual orbitals are normally limited to few hundreds. In this work, we propose a new effective implementation of DMRG-MRCI, in which we use re-constructed CASCI-type configurations from DMRG wave function via the entropy-driving genetic algorithm (EDGA), and integrate with MRCI by an external contraction (ec) scheme. This bypasses the bottleneck of computing high-order RDMs in traditional DMRG dynamic correlation methods with ic approximation and the number of MRCI configurations is not dependent on the number of virtual orbitals. Therefore, DMRG-ec-MRCI method is promising for dealing with larger active space than 30 orbitals and large basis sets. We demonstrate the capability of our DMRG-ec-MRCI method in several benchmark applications, including the evaluation of potential energy curve of Cr$_{2}$, single-triplet gaps of higher n-acene molecules and the energy of Eu-BTBP(NO$_3$)$_3$ complex.

cond-mat.str-el↗

arXiv2017

Efficient reconstruction of CASCI-type wave functions for a DMRG state using quantum information theory and genetic algorithm

We improve the methodology to construct a complete active space-configuration interaction (CAS-CI) expansion for density-matrix renormalization group (DMRG) wave function using matrix-product state representation, inspired by the sampling-reconstructed CAS [SR-CAS, Boguslawski et al, J. Chem. Phys. 2011, 134, 224101] algorithm. In our scheme, a genetic algorithm, in which the "crossover" and "mutation" process can be optimized based on quantum information theory, is employed when reconstructing the CASCI-type wave function in the Hilbert space. Test analysis results for the ground and excited state wave functions of conjugated molecules and transition metal compounds illustrate that our scheme is very efficient for searching the most important CI expansions in large active spaces.

cond-mat.str-el↗

arXiv2017

Second-Order Self-Consistent-Field Density-Matrix Renormalization Group

We present a matrix-product state (MPS)-based quadratically convergent density-matrix renormalization group self-consistent-field (DMRG-SCF) approach. Following a proposal by Werner and Knowles (JCP 82, 5053, (1985)), our DMRG-SCF algorithm is based on a direct minimization of an energy expression which is correct to second-order with respect to changes in the molecular orbital basis. We exploit a simultaneous optimization of the MPS wave function and molecular orbitals in order to achieve quadratic convergence. In contrast to previously reported (augmented Hessian) Newton-Raphson and super-configuration-interaction algorithms for DMRG-SCF, energy convergence beyond a quadratic scaling is possible in our ansatz. Discarding the set of redundant active-active orbital rotations, the DMRG-SCF energy converges typically within two to four cycles of the self-consistent procedure

physics.chem-ph↗

arXiv2016

New Approaches for ab initio Calculations of Molecules with Strong Electron Correlation

Reliable quantum chemical methods for the description of molecules with dense-lying frontier orbitals are needed in the context of many chemical compounds and reactions. Here, we review developments that led to our newcomputational toolbo x which implements the quantum chemical density matrix renormalization group in a second-generation algorithm. We present an overview of the different components of this toolbox.

physics.chem-ph↗

arXiv2015

Density-Matrix Renormalization Group Algorithm with Multi-Level Active Space

The density-matrix renormalization group (DMRG) method, which can deal with a large active space composed of tens of orbitals, is nowadays widely used as an efficient addition to traditional complete active space (CAS)-based approaches. In this paper, we present the DMRG algorithm with a multi-level (ML) control of the active space based on chemical intuition-based hierarchical orbital ordering, which is called as ML-DMRG with its self-consistent field variant ML-DMRG-SCF. Ground and excited state calculations of H2O, N2, indole, and Cr2 with comparisons to DMRG references using fixed number of kept states (M) illustrate that MLtype DMRG calculations can obtain noticeable efficiency gains. It is also shown that the orbital re-ordering based on hierarchical multiple active subspaces may be beneficial for reducing computational time for not only ML-DMRG calculations but also DMRG ones with fixed M values.

cond-mat.str-el↗

arXiv2014

Self-Consistent Embedding of Density-Matrix Renormalization Group Wavefunctions in a Density Functional Environment

We present the first implementation of a density matrix renormalization group algorithm embedded in an environment described by density functional theory. The frozen density embedding scheme is used with a freeze-and-thaw strategy for a self-consistent polarization of the orbital-optimized wavefunction and the environmental densities with respect to each other.

physics.chem-ph↗

arXiv2013

Assessment of various natural orbitals as the basis of large active space density matrix renormalization group calculations

It is well-known that not only the orbital ordering but also the choice of the orbitals themselves as the basis may significantly influence the computational efficiency of density-matrix renormalization group (DMRG) calculations. In this study, for assessing the efficiency of using various natural orbitals (NOs) as the DMRG basis, we performed benchmark DMRG calculations with different bases, which included the NOs obtained by various traditional electron correlation methods, as well as NOs acquired from preliminary moderate DMRG calculations (e.g., preserved states less than 500). The tested systems included N$_2$, transition metal Cr$_2$ systems, as well as 1-D hydrogen polyradical chain systems under equilibrium and dissociation conditions and 2-D hydrogen aggregates. The results indicate that a good compromise between the requirement for low computational costs of acquiring NOs and the demand for high efficiency of NOs as the basis of DMRG calculations may be very dependent on the studied systems' diverse electron correlation characteristics and the size of the active space. It is also shown that a DMRG-complete active space configuration interaction (DMRG-CASCI) calculation in a basis of carefully chosen NOs can provide a less expensive alternative to the standard DMRG-CASSCF calculation and avoid the convergence difficulties of orbital optimization for large active spaces. The effect of different NO ordering schemes on DMRG-CASCI calculations is also discussed.

cond-mat.str-el↗

arXiv2013

Calculating excited states of molecular aggregates by the renormalized excitonic method

In this paper, we apply the recently developed ab initio renormalized excitonic method (REM) to the excitation energy calculations of various molecular aggregates, through the extension of REM to the time-dependent density functional theory (TDDFT). Tested molecular aggregate systems include one-dimensional hydrogen-bonded water chains, ring crystals with $π$-$π$ stacking or van-der Waals interactions and the general aqueous systems with polar and non-polar solutes. The basis set factor as well as the effect of the exchange-correlation functionals are also investigated. The results indicate that the REM-TDDFT method with suitable basis set and exchange-correlation functionals can give good descriptions of excitation energies and excitation area for lowest electronic excitations in the molecular aggregate systems with economic computational costs. It's shown that the deviations of REM-TDDFT excitation energies from those by standard TDDFT are much less than 0.1 eV and the computational time can be reduced by one order.

physics.chem-ph↗