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Yingxu Wang

Publications and source records attributed to Yingxu Wang.

31 records · Page 2Linked to original sources

DAMR: Efficient and Adaptive Context-Aware Knowledge Graph Question Answering with LLM-Guided MCTS

Knowledge Graph Question Answering (KGQA) aims to interpret natural language queries and perform structured reasoning over knowledge graphs by leveraging their relational and semantic structures to retrieve accurate answers. Existing methods primarily follow either the retrieve-then-reason paradigm, which relies on Graph Neural Networks or heuristic rules to extract static candidate paths, or dynamic path generation strategies that employ LLMs with prompting to jointly perform retrieval and reasoning. However, the former lacks adaptability due to static path extraction and the absence of contextual refinement, while the latter suffers from high computational costs and limited evaluation accuracy because of their dependence on fixed scoring functions and repeated LLM calls. To address these issues, this paper proposes Dynamically Adaptive MCTS-based Reasoning (DAMR), a novel framework that integrates LLM-guided Monte Carlo Tree Search (MCTS) with adaptive path evaluation to enable efficient and context-aware KGQA. DAMR leverages MCTS as a backbone, where an LLM-based planner selects the top-$k$ semantically relevant relations at each expansion step to effectively reduce the search space. To enhance evaluation accuracy, we introduce a lightweight Transformer-based scorer that performs context-aware plausibility estimation by jointly encoding the question and relation sequence through cross-attention, thereby capturing fine-grained semantic shifts during multi-hop reasoning. Furthermore, to mitigate the scarcity of high-quality supervision, DAMR incorporates a dynamic pseudo-path refinement mechanism that periodically generates training signals from partial paths explored during search, enabling the scorer to continually adapt to the evolving distribution of reasoning trajectories. Extensive experiments on multiple KGQA benchmarks show that DAMR significantly outperforms SOTA methods.

cs.CL↗

EvoAgentX: An Automated Framework for Evolving Agentic Workflows

Multi-agent systems (MAS) have emerged as a powerful paradigm for orchestrating large language models (LLMs) and specialized tools to collaboratively address complex tasks. However, existing MAS frameworks often require manual workflow configuration and lack native support for dynamic evolution and performance optimization. In addition, many MAS optimization algorithms are not integrated into a unified framework. In this paper, we present EvoAgentX, an open-source platform that automates the generation, execution, and evolutionary optimization of multi-agent workflows. EvoAgentX employs a modular architecture consisting of five core layers: the basic components, agent, workflow, evolving, and evaluation layers. Specifically, within the evolving layer, EvoAgentX integrates three MAS optimization algorithms, TextGrad, AFlow, and MIPRO, to iteratively refine agent prompts, tool configurations, and workflow topologies. We evaluate EvoAgentX on HotPotQA, MBPP, and MATH for multi-hop reasoning, code generation, and mathematical problem solving, respectively, and further assess it on real-world tasks using GAIA. Experimental results show that EvoAgentX consistently achieves significant performance improvements, including a 7.44% increase in HotPotQA F1, a 10.00% improvement in MBPP pass@1, a 10.00% gain in MATH solve accuracy, and an overall accuracy improvement of up to 20.00% on GAIA. The source code is available at: https://github.com/EvoAgentX/EvoAgentX

cs.AI↗

Nested Graph Pseudo-Label Refinement for Noisy Label Domain Adaptation Learning

Graph Domain Adaptation (GDA) facilitates knowledge transfer from labeled source graphs to unlabeled target graphs by learning domain-invariant representations, which is essential in applications such as molecular property prediction and social network analysis. However, most existing GDA methods rely on the assumption of clean source labels, which rarely holds in real-world scenarios where annotation noise is pervasive. This label noise severely impairs feature alignment and degrades adaptation performance under domain shifts. To address this challenge, we propose Nested Graph Pseudo-Label Refinement (NeGPR), a novel framework tailored for graph-level domain adaptation with noisy labels. NeGPR first pretrains dual branches, i.e., semantic and topology branches, by enforcing neighborhood consistency in the feature space, thereby reducing the influence of noisy supervision. To bridge domain gaps, NeGPR employs a nested refinement mechanism in which one branch selects high-confidence target samples to guide the adaptation of the other, enabling progressive cross-domain learning. Furthermore, since pseudo-labels may still contain noise and the pre-trained branches are already overfitted to the noisy labels in the source domain, NeGPR incorporates a noise-aware regularization strategy. This regularization is theoretically proven to mitigate the adverse effects of pseudo-label noise, even under the presence of source overfitting, thus enhancing the robustness of the adaptation process. Extensive experiments on benchmark datasets demonstrate that NeGPR consistently outperforms state-of-the-art methods under severe label noise, achieving gains of up to 12.7% in accuracy.

cs.LG↗

A Comprehensive Survey of Self-Evolving AI Agents: A New Paradigm Bridging Foundation Models and Lifelong Agentic Systems

Recent advances in large language models have sparked growing interest in AI agents capable of solving complex, real-world tasks. However, most existing agent systems rely on manually crafted configurations that remain static after deployment, limiting their ability to adapt to dynamic and evolving environments. To this end, recent research has explored agent evolution techniques that aim to automatically enhance agent systems based on interaction data and environmental feedback. This emerging direction lays the foundation for self-evolving AI agents, which bridge the static capabilities of foundation models with the continuous adaptability required by lifelong agentic systems. In this survey, we provide a comprehensive review of existing techniques for self-evolving agentic systems. Specifically, we first introduce a unified conceptual framework that abstracts the feedback loop underlying the design of self-evolving agentic systems. The framework highlights four key components: System Inputs, Agent System, Environment, and Optimisers, serving as a foundation for understanding and comparing different strategies. Based on this framework, we systematically review a wide range of self-evolving techniques that target different components of the agent system. We also investigate domain-specific evolution strategies developed for specialised fields such as biomedicine, programming, and finance, where optimisation objectives are tightly coupled with domain constraints. In addition, we provide a dedicated discussion on the evaluation, safety, and ethical considerations for self-evolving agentic systems, which are critical to ensuring their effectiveness and reliability. This survey aims to provide researchers and practitioners with a systematic understanding of self-evolving AI agents, laying the foundation for the development of more adaptive, autonomous, and lifelong agentic systems.

cs.AI↗

Cross-Attention Graph Neural Networks for Inferring Gene Regulatory Networks with Skewed Degree Distribution

Inferencing Gene Regulatory Networks (GRNs) from gene expression data is a pivotal challenge in systems biology, and several innovative computational methods have been introduced. However, most of these studies have not considered the skewed degree distribution of genes. Specifically, some genes may regulate multiple target genes while some genes may be regulated by multiple regulator genes. Such a skewed degree distribution issue significantly complicates the application of directed graph embedding methods. To tackle this issue, we propose the Cross-Attention Complex Dual Graph Embedding Model (XATGRN). Our XATGRN employs a cross-attention mechanism to effectively capture intricate gene interactions from gene expression profiles. Additionally, it uses a Dual Complex Graph Embedding approach to manage the skewed degree distribution, thereby ensuring precise prediction of regulatory relationships and their directionality. Our model consistently outperforms existing state-of-the-art methods across various datasets, underscoring its efficacy in elucidating complex gene regulatory mechanisms. Our codes used in this paper are publicly available at: https://github.com/kikixiong/XATGRN.

q-bio.QM↗

A Decade of Deep Learning: A Survey on The Magnificent Seven

Deep learning has fundamentally reshaped the landscape of artificial intelligence over the past decade, enabling remarkable achievements across diverse domains. At the heart of these developments lie multi-layered neural network architectures that excel at automatic feature extraction, leading to significant improvements in machine learning tasks. To demystify these advances and offer accessible guidance, we present a comprehensive overview of the most influential deep learning algorithms selected through a broad-based survey of the field. Our discussion centers on pivotal architectures, including Residual Networks, Transformers, Generative Adversarial Networks, Variational Autoencoders, Graph Neural Networks, Contrastive Language-Image Pre-training, and Diffusion models. We detail their historical context, highlight their mathematical foundations and algorithmic principles, and examine subsequent variants, extensions, and practical considerations such as training methodologies, normalization techniques, and learning rate schedules. Beyond historical and technical insights, we also address their applications, challenges, and potential research directions. This survey aims to serve as a practical manual for both newcomers seeking an entry point into cutting-edge deep learning methods and experienced researchers transitioning into this rapidly evolving domain.

cs.LG↗

Dynamic PDB: A New Dataset and a SE(3) Model Extension by Integrating Dynamic Behaviors and Physical Properties in Protein Structures

Despite significant progress in static protein structure collection and prediction, the dynamic behavior of proteins, one of their most vital characteristics, has been largely overlooked in prior research. This oversight can be attributed to the limited availability, diversity, and heterogeneity of dynamic protein datasets. To address this gap, we propose to enhance existing prestigious static 3D protein structural databases, such as the Protein Data Bank (PDB), by integrating dynamic data and additional physical properties. Specifically, we introduce a large-scale dataset, Dynamic PDB, encompassing approximately 12.6K proteins, each subjected to all-atom molecular dynamics (MD) simulations lasting 1 microsecond to capture conformational changes. Furthermore, we provide a comprehensive suite of physical properties, including atomic velocities and forces, potential and kinetic energies of proteins, and the temperature of the simulation environment, recorded at 1 picosecond intervals throughout the simulations. For benchmarking purposes, we evaluate state-of-the-art methods on the proposed dataset for the task of trajectory prediction. To demonstrate the value of integrating richer physical properties in the study of protein dynamics and related model design, we base our approach on the SE(3) diffusion model and incorporate these physical properties into the trajectory prediction process. Preliminary results indicate that this straightforward extension of the SE(3) model yields improved accuracy, as measured by MAE and RMSD, when the proposed physical properties are taken into consideration. https://fudan-generative-vision.github.io/dynamicPDB/ .

q-bio.BM↗

CL4CTR: A Contrastive Learning Framework for CTR Prediction

Many Click-Through Rate (CTR) prediction works focused on designing advanced architectures to model complex feature interactions but neglected the importance of feature representation learning, e.g., adopting a plain embedding layer for each feature, which results in sub-optimal feature representations and thus inferior CTR prediction performance. For instance, low frequency features, which account for the majority of features in many CTR tasks, are less considered in standard supervised learning settings, leading to sub-optimal feature representations. In this paper, we introduce self-supervised learning to produce high-quality feature representations directly and propose a model-agnostic Contrastive Learning for CTR (CL4CTR) framework consisting of three self-supervised learning signals to regularize the feature representation learning: contrastive loss, feature alignment, and field uniformity. The contrastive module first constructs positive feature pairs by data augmentation and then minimizes the distance between the representations of each positive feature pair by the contrastive loss. The feature alignment constraint forces the representations of features from the same field to be close, and the field uniformity constraint forces the representations of features from different fields to be distant. Extensive experiments verify that CL4CTR achieves the best performance on four datasets and has excellent effectiveness and compatibility with various representative baselines.

cs.IR↗

Enhancing CTR Prediction with Context-Aware Feature Representation Learning

CTR prediction has been widely used in the real world. Many methods model feature interaction to improve their performance. However, most methods only learn a fixed representation for each feature without considering the varying importance of each feature under different contexts, resulting in inferior performance. Recently, several methods tried to learn vector-level weights for feature representations to address the fixed representation issue. However, they only produce linear transformations to refine the fixed feature representations, which are still not flexible enough to capture the varying importance of each feature under different contexts. In this paper, we propose a novel module named Feature Refinement Network (FRNet), which learns context-aware feature representations at bit-level for each feature in different contexts. FRNet consists of two key components: 1) Information Extraction Unit (IEU), which captures contextual information and cross-feature relationships to guide context-aware feature refinement; and 2) Complementary Selection Gate (CSGate), which adaptively integrates the original and complementary feature representations learned in IEU with bit-level weights. Notably, FRNet is orthogonal to existing CTR methods and thus can be applied in many existing methods to boost their performance. Comprehensive experiments are conducted to verify the effectiveness, efficiency, and compatibility of FRNet.

cs.IR↗

TB-ICT: A Trustworthy Blockchain-Enabled System for Indoor COVID-19 Contact Tracing

Recently, as a consequence of the COVID-19 pandemic, dependence on Contact Tracing (CT) models has significantly increased to prevent spread of this highly contagious virus and be prepared for the potential future ones. Since the spreading probability of the novel coronavirus in indoor environments is much higher than that of the outdoors, there is an urgent and unmet quest to develop/design efficient, autonomous, trustworthy, and secure indoor CT solutions. Despite such an urgency, this field is still in its infancy. The paper addresses this gap and proposes the Trustworthy Blockchain-enabled system for Indoor Contact Tracing (TB-ICT) framework. The TB-ICT framework is proposed to protect privacy and integrity of the underlying CT data from unauthorized access. More specifically, it is a fully distributed and innovative blockchain platform exploiting the proposed dynamic Proof of Work (dPoW) credit-based consensus algorithm coupled with Randomized Hash Window (W-Hash) and dynamic Proof of Credit (dPoC) mechanisms to differentiate between honest and dishonest nodes. The TB-ICT not only provides a decentralization in data replication but also quantifies the node's behavior based on its underlying credit-based mechanism. For achieving high localization performance, we capitalize on availability of Internet of Things (IoT) indoor localization infrastructures, and develop a data driven localization model based on Bluetooth Low Energy (BLE) sensor measurements. The simulation results show that the proposed TB-ICT prevents the COVID-19 from spreading by implementation of a highly accurate contact tracing model while improving the users' privacy and security.

cs.CR↗

On the Philosophical, Cognitive and Mathematical Foundations of Symbiotic Autonomous Systems (SAS)

Symbiotic Autonomous Systems (SAS) are advanced intelligent and cognitive systems exhibiting autonomous collective intelligence enabled by coherent symbiosis of human-machine interactions in hybrid societies. Basic research in the emerging field of SAS has triggered advanced general AI technologies functioning without human intervention or hybrid symbiotic systems synergizing humans and intelligent machines into coherent cognitive systems. This work presents a theoretical framework of SAS underpinned by the latest advances in intelligence, cognition, computer, and system sciences. SAS are characterized by the composition of autonomous and symbiotic systems that adopt bio-brain-social-inspired and heterogeneously synergized structures and autonomous behaviors. This paper explores their cognitive and mathematical foundations. The challenge to seamless human-machine interactions in a hybrid environment is addressed. SAS-based collective intelligence is explored in order to augment human capability by autonomous machine intelligence towards the next generation of general AI, autonomous computers, and trustworthy mission-critical intelligent systems. Emerging paradigms and engineering applications of SAS are elaborated via an autonomous knowledge learning system that symbiotically works between humans and cognitive robots.

cs.AI↗

Diagnosis/Prognosis of COVID-19 Images: Challenges, Opportunities, and Applications

The novel Coronavirus disease, COVID-19, has rapidly and abruptly changed the world as we knew in 2020. It becomes the most unprecedent challenge to analytic epidemiology in general and signal processing theories in specific. Given its high contingency nature and adverse effects across the world, it is important to develop efficient processing/learning models to overcome this pandemic and be prepared for potential future ones. In this regard, medical imaging plays an important role for the management of COVID-19. Human-centered interpretation of medical images is, however, tedious and can be subjective. This has resulted in a surge of interest to develop Radiomics models for analysis and interpretation of medical images. Signal Processing (SP) and Deep Learning (DL) models can assist in development of robust Radiomics solutions for diagnosis/prognosis, severity assessment, treatment response, and monitoring of COVID-19 patients. In this article, we aim to present an overview of the current state, challenges, and opportunities of developing SP/DL-empowered models for diagnosis (screening/monitoring) and prognosis (outcome prediction and severity assessment) of COVID-19 infection. More specifically, the article starts by elaborating the latest development on the theoretical framework of analytic epidemiology and hypersignal processing for COVID-19. Afterwards, imaging modalities and Radiological characteristics of COVID-19 are discussed. SL/DL-based Radiomic models specific to the analysis of COVID-19 infection are then described covering the following four domains: Segmentation of COVID-19 lesions; Predictive models for outcome prediction; Severity assessment, and; Diagnosis/classification models. Finally, open problems and opportunities are presented in detail.

eess.IV↗

Dynamic Multi-path Neural Network

Although deeper and larger neural networks have achieved better performance, the complex network structure and increasing computational cost cannot meet the demands of many resource-constrained applications. Existing methods usually choose to execute or skip an entire specific layer, which can only alter the depth of the network. In this paper, we propose a novel method called Dynamic Multi-path Neural Network (DMNN), which provides more path selection choices in terms of network width and depth during inference. The inference path of the network is determined by a controller, which takes into account both previous state and object category information. The proposed method can be easily incorporated into most modern network architectures. Experimental results on ImageNet and CIFAR-100 demonstrate the superiority of our method on both efficiency and overall classification accuracy. To be specific, DMNN-101 significantly outperforms ResNet-101 with an encouraging 45.1% FLOPs reduction, and DMNN-50 performs comparably to ResNet-101 while saving 42.1% parameters.

cs.CV↗