arXiv subjects

Yinhao Li

Publications and source records attributed to Yinhao Li.

29 records · Page 2Linked to original sources

arXiv2022

Unsupervised MRI Super-Resolution Using Deep External Learning and Guided Residual Dense Network with Multimodal Image Priors

Deep learning techniques have led to state-of-the-art image super resolution with natural images. Normally, pairs of high-resolution and low-resolution images are used to train the deep learning models. These techniques have also been applied to medical image super-resolution. The characteristics of medical images differ significantly from natural images in several ways. First, it is difficult to obtain high-resolution images for training in real clinical applications due to the limitations of imaging systems and clinical requirements. Second, other modal high-resolution images are available (e.g., high-resolution T1-weighted images are available for enhancing low-resolution T2-weighted images). In this paper, we propose an unsupervised image super-resolution technique based on simple prior knowledge of the human anatomy. This technique does not require target T2WI high-resolution images for training. Furthermore, we present a guided residual dense network, which incorporates a residual dense network with a guided deep convolutional neural network for enhancing the resolution of low-resolution images by referring to different modal high-resolution images of the same subject. Experiments on a publicly available brain MRI database showed that our proposed method achieves better performance than the state-of-the-art methods.

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arXiv2022

BEVStereo: Enhancing Depth Estimation in Multi-view 3D Object Detection with Dynamic Temporal Stereo

Bounded by the inherent ambiguity of depth perception, contemporary camera-based 3D object detection methods fall into the performance bottleneck. Intuitively, leveraging temporal multi-view stereo (MVS) technology is the natural knowledge for tackling this ambiguity. However, traditional attempts of MVS are flawed in two aspects when applying to 3D object detection scenes: 1) The affinity measurement among all views suffers expensive computation cost; 2) It is difficult to deal with outdoor scenarios where objects are often mobile. To this end, we introduce an effective temporal stereo method to dynamically select the scale of matching candidates, enable to significantly reduce computation overhead. Going one step further, we design an iterative algorithm to update more valuable candidates, making it adaptive to moving candidates. We instantiate our proposed method to multi-view 3D detector, namely BEVStereo. BEVStereo achieves the new state-of-the-art performance (i.e., 52.5% mAP and 61.0% NDS) on the camera-only track of nuScenes dataset. Meanwhile, extensive experiments reflect our method can deal with complex outdoor scenarios better than contemporary MVS approaches. Codes have been released at https://github.com/Megvii-BaseDetection/BEVStereo.

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arXiv2022

STS: Surround-view Temporal Stereo for Multi-view 3D Detection

Learning accurate depth is essential to multi-view 3D object detection. Recent approaches mainly learn depth from monocular images, which confront inherent difficulties due to the ill-posed nature of monocular depth learning. Instead of using a sole monocular depth method, in this work, we propose a novel Surround-view Temporal Stereo (STS) technique that leverages the geometry correspondence between frames across time to facilitate accurate depth learning. Specifically, we regard the field of views from all cameras around the ego vehicle as a unified view, namely surroundview, and conduct temporal stereo matching on it. The resulting geometrical correspondence between different frames from STS is utilized and combined with the monocular depth to yield final depth prediction. Comprehensive experiments on nuScenes show that STS greatly boosts 3D detection ability, notably for medium and long distance objects. On BEVDepth with ResNet-50 backbone, STS improves mAP and NDS by 2.6% and 1.4%, respectively. Consistent improvements are observed when using a larger backbone and a larger image resolution, demonstrating its effectiveness

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arXiv2021

DeepACC:Automate Chromosome Classification based on Metaphase Images using Deep Learning Framework Fused with Prior Knowledge

Chromosome classification is an important but difficult and tedious task in karyotyping. Previous methods only classify manually segmented single chromosome, which is far from clinical practice. In this work, we propose a detection based method, DeepACC, to locate and fine classify chromosomes simultaneously based on the whole metaphase image. We firstly introduce the Additive Angular Margin Loss to enhance the discriminative power of model. To alleviate batch effects, we transform decision boundary of each class case-by-case through a siamese network which make full use of prior knowledges that chromosomes usually appear in pairs. Furthermore, we take the clinically seven group criterion as a prior knowledge and design an additional Group Inner-Adjacency Loss to further reduce inter-class similarities. 3390 metaphase images from clinical laboratory are collected and labelled to evaluate the performance. Results show that the new design brings encouraging performance gains comparing to the state-of-the-art baselines.

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arXiv2021

Deep Learning to Segment Pelvic Bones: Large-scale CT Datasets and Baseline Models

Purpose: Pelvic bone segmentation in CT has always been an essential step in clinical diagnosis and surgery planning of pelvic bone diseases. Existing methods for pelvic bone segmentation are either hand-crafted or semi-automatic and achieve limited accuracy when dealing with image appearance variations due to the multi-site domain shift, the presence of contrasted vessels, coprolith and chyme, bone fractures, low dose, metal artifacts, etc. Due to the lack of a large-scale pelvic CT dataset with annotations, deep learning methods are not fully explored. Methods: In this paper, we aim to bridge the data gap by curating a large pelvic CT dataset pooled from multiple sources and different manufacturers, including 1, 184 CT volumes and over 320, 000 slices with different resolutions and a variety of the above-mentioned appearance variations. Then we propose for the first time, to the best of our knowledge, to learn a deep multi-class network for segmenting lumbar spine, sacrum, left hip, and right hip, from multiple-domain images simultaneously to obtain more effective and robust feature representations. Finally, we introduce a post-processing tool based on the signed distance function (SDF) to eliminate false predictions while retaining correctly predicted bone fragments. Results: Extensive experiments on our dataset demonstrate the effectiveness of our automatic method, achieving an average Dice of 0.987 for a metal-free volume. SDF post-processor yields a decrease of 10.5% in hausdorff distance by maintaining important bone fragments in post-processing phase. Conclusion: We believe this large-scale dataset will promote the development of the whole community and plan to open source the images, annotations, codes, and trained baseline models at https://github.com/ICT-MIRACLE-lab/CTPelvic1K.

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arXiv2021

Pathological Image Segmentation with Noisy Labels

Segmentation of pathological images is essential for accurate disease diagnosis. The quality of manual labels plays a critical role in segmentation accuracy; yet, in practice, the labels between pathologists could be inconsistent, thus confusing the training process. In this work, we propose a novel label re-weighting framework to account for the reliability of different experts' labels on each pixel according to its surrounding features. We further devise a new attention heatmap, which takes roughness as prior knowledge to guide the model to focus on important regions. Our approach is evaluated on the public Gleason 2019 datasets. The results show that our approach effectively improves the model's robustness against noisy labels and outperforms state-of-the-art approaches.

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arXiv2020

VolumeNet: A Lightweight Parallel Network for Super-Resolution of Medical Volumetric Data

Deep learning-based super-resolution (SR) techniques have generally achieved excellent performance in the computer vision field. Recently, it has been proven that three-dimensional (3D) SR for medical volumetric data delivers better visual results than conventional two-dimensional (2D) processing. However, deepening and widening 3D networks increases training difficulty significantly due to the large number of parameters and small number of training samples. Thus, we propose a 3D convolutional neural network (CNN) for SR of medical volumetric data called ParallelNet using parallel connections. We construct a parallel connection structure based on the group convolution and feature aggregation to build a 3D CNN that is as wide as possible with few parameters. As a result, the model thoroughly learns more feature maps with larger receptive fields. In addition, to further improve accuracy, we present an efficient version of ParallelNet (called VolumeNet), which reduces the number of parameters and deepens ParallelNet using a proposed lightweight building block module called the Queue module. Unlike most lightweight CNNs based on depthwise convolutions, the Queue module is primarily constructed using separable 2D cross-channel convolutions. As a result, the number of network parameters and computational complexity can be reduced significantly while maintaining accuracy due to full channel fusion. Experimental results demonstrate that the proposed VolumeNet significantly reduces the number of model parameters and achieves high precision results compared to state-of-the-art methods.

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arXiv2020

DeepACEv2: Automated Chromosome Enumeration in Metaphase Cell Images Using Deep Convolutional Neural Networks

Chromosome enumeration is an essential but tedious procedure in karyotyping analysis. To automate the enumeration process, we develop a chromosome enumeration framework, DeepACEv2, based on the region based object detection scheme. The framework is developed following three steps. Firstly, we take the classical ResNet-101 as the backbone and attach the Feature Pyramid Network (FPN) to the backbone. The FPN takes full advantage of the multiple level features, and we only output the level of feature map that most of the chromosomes are assigned to. Secondly, we enhance the region proposal network's ability by adding a newly proposed Hard Negative Anchors Sampling to extract unapparent but essential information about highly confusing partial chromosomes. Next, to alleviate serious occlusion problems, besides the traditional detection branch, we novelly introduce an isolated Template Module branch to extract unique embeddings of each proposal by utilizing the chromosome's geometric information. The embeddings are further incorporated into the No Maximum Suppression (NMS) procedure to improve the detection of overlapping chromosomes. Finally, we design a Truncated Normalized Repulsion Loss and add it to the loss function to avoid inaccurate localization caused by occlusion. In the newly collected 1375 metaphase images that came from a clinical laboratory, a series of ablation studies validate the effectiveness of each proposed module. Combining them, the proposed DeepACEv2 outperforms all the previous methods, yielding the Whole Correct Ratio(WCR)(%) with respect to images as 71.39, and the Average Error Ratio(AER)(%) with respect to chromosomes as about 1.17.

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arXiv2020

Orchestrating the Development Lifecycle of Machine Learning-Based IoT Applications: A Taxonomy and Survey

Machine Learning (ML) and Internet of Things (IoT) are complementary advances: ML techniques unlock complete potentials of IoT with intelligence, and IoT applications increasingly feed data collected by sensors into ML models, thereby employing results to improve their business processes and services. Hence, orchestrating ML pipelines that encompasses model training and implication involved in holistic development lifecycle of an IoT application often leads to complex system integration. This paper provides a comprehensive and systematic survey on the development lifecycle of ML-based IoT application. We outline core roadmap and taxonomy, and subsequently assess and compare existing standard techniques used in individual stage.

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arXiv2018

End-to-End Service Level Agreement Specification for IoT Applications

The Internet of Things (IoT) promises to help solve a wide range of issues that relate to our wellbeing within application domains that include smart cities, healthcare monitoring, and environmental monitoring. IoT is bringing new wireless sensor use cases by taking advantage of the computing power and flexibility provided by Edge and Cloud Computing. However, the software and hardware resources used within such applications must perform correctly and optimally. Especially in applications where a failure of resources can be critical. Service Level Agreements (SLA) where the performance requirements of such applications are defined, need to be specified in a standard way that reflects the end-to-end nature of IoT application domains, accounting for the Quality of Service (QoS) metrics within every layer including the Edge, Network Gateways, and Cloud. In this paper, we propose a conceptual model that captures the key entities of an SLA and their relationships, as a prior step for end-to-end SLA specification and composition. Service level objective (SLO) terms are also considered to express the QoS constraints. Moreover, we propose a new SLA grammar which considers workflow activities and the multi-layered nature of IoT applications. Accordingly, we develop a tool for SLA specification and composition that can be used as a template to generate SLAs in a machine-readable format. We demonstrate the effectiveness of the proposed specification language through a literature survey that includes an SLA language comparison analysis, and via reflecting the user satisfaction results of a usability study.

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arXiv2018

A Unified Knowledge Representation and Context-aware Recommender System in Internet of Things

Within the rapidly developing Internet of Things (IoT), numerous and diverse physical devices, Edge devices, Cloud infrastructure, and their quality of service requirements (QoS), need to be represented within a unified specification in order to enable rapid IoT application development, monitoring, and dynamic reconfiguration. But heterogeneities among different configuration knowledge representation models pose limitations for acquisition, discovery and curation of configuration knowledge for coordinated IoT applications. This paper proposes a unified data model to represent IoT resource configuration knowledge artifacts. It also proposes IoT-CANE (Context-Aware recommendatioN systEm) to facilitate incremental knowledge acquisition and declarative context driven knowledge recommendation.

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