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Yiqiu Dong

Publications and source records attributed to Yiqiu Dong.

At least 19 recordsLinked to original sources

Bayesian decomposition using Besov priors

In many inverse problems, the unknown is composed of multiple components with different regularities, for example, in imaging problems, where the unknown can have both rough and smooth features. We investigate linear Bayesian inverse problems, where the unknown consists of two components: one smooth and one piecewise constant. We model the unknown as a sum of two components and assign individual priors on each component to impose the assumed behavior. We propose and compare two prior models: (i) a combination of a Haar wavelet-based Besov prior and a smoothing Besov prior, and (ii) a hierarchical Gaussian prior on the gradient coupled with a smoothing Besov prior. To achieve a balanced reconstruction, we place hyperpriors on the prior parameters and jointly infer both the components and the hyperparameters. We propose Gibbs sampling schemes for posterior inference in both prior models. We demonstrate the capabilities of our approach on 1D and 2D deconvolution problems, where the unknown consists of smooth parts with jumps. The numerical results indicate that our methods improve the reconstruction quality compared to single-prior approaches and that the prior parameters can be successfully estimated to yield a balanced decomposition.

stat.CO

Dual-grid parameter choice method with application to image deblurring

Variational regularization of ill-posed inverse problems is based on minimizing the sum of a data fidelity term and a regularization term. The balance between them is tuned using a positive regularization parameter, whose automatic choice remains an open question in general. A novel approach for parameter choice is introduced, based on the use of two slightly different computational models for the same inverse problem. Small parameter values should give two very different reconstructions due to amplification of noise. Large parameter values lead to two identical but trivial reconstructions. Optimal parameter is chosen between the extremes by matching image similarity of the two reconstructions with a pre-defined value. Efficacy of the new method is demonstrated with image deblurring using measured data and two different regularizers.

math.NA

Sparsity via Hyperpriors: A Theoretical and Algorithmic Study under Empirical Bayes Framework

This paper presents a comprehensive analysis of hyperparameter estimation within the empirical Bayes framework (EBF) for sparse learning. By studying the influence of hyperpriors on the solution of EBF, we establish a theoretical connection between the choice of the hyperprior and the sparsity as well as the local optimality of the resulting solutions. We show that some strictly increasing hyperpriors, such as half-Laplace and half-generalized Gaussian with the power in $(0,1)$, effectively promote sparsity and improve solution stability with respect to measurement noise. Based on this analysis, we adopt a proximal alternating linearized minimization (PALM) algorithm with convergence guaranties for both convex and concave hyperpriors. Extensive numerical tests on two-dimensional image deblurring problems demonstrate that introducing appropriate hyperpriors significantly promotes the sparsity of the solution and enhances restoration accuracy. Furthermore, we illustrate the influence of the noise level and the ill-posedness of inverse problems to EBF solutions.

stat.ML

Uncertainty Quantification for Linear Inverse Problems with Besov Prior: A Randomize-Then-Optimize Method

In this work, we investigate the use of Besov priors in the context of Bayesian inverse problems. The solution to Bayesian inverse problems is the posterior distribution which naturally enables us to interpret the uncertainties. Besov priors are discretization invariant and can promote sparsity in terms of wavelet coefficients. We propose the randomize-then-optimize method to draw samples from the posterior distribution with Besov priors under a general parameter setting and estimate the modes of the posterior distribution. The performance of the proposed method is studied through numerical experiments of a 1D inpainting problem, a 1D deconvolution problem, and a 2D computed tomography problem. Further, we discuss the influence of the choice of the Besov parameters and the wavelet basis in detail, and we compare the proposed method with the state-of-the-art methods. The numerical results suggest that the proposed method is an effective tool for sampling the posterior distribution equipped with general Besov priors.

math.NA

Local MALA-within-Gibbs for Bayesian image deblurring with total variation prior

We consider Bayesian inference for image deblurring with total variation (TV) prior. Since the posterior is analytically intractable, we resort to Markov chain Monte Carlo (MCMC) methods. However, since most MCMC methods significantly deteriorate in high dimensions, they are not suitable to handle high resolution imaging problems. In this paper, we show how low-dimensional sampling can still be facilitated by exploiting the sparse conditional structure of the posterior. To this end, we make use of the local structures of the blurring operator and the TV prior by partitioning the image into rectangular blocks and employing a blocked Gibbs sampler with proposals stemming from the Metropolis-Hastings adjusted Langevin Algorithm (MALA). We prove that this MALA-within-Gibbs (MLwG) sampling algorithm has dimension-independent block acceptance rates and dimension-independent convergence rate. In order to apply the MALA proposals, we approximate the TV by a smoothed version, and show that the introduced approximation error is evenly distributed and dimension-independent. Since the posterior is a Gibbs density, we can use the Hammersley-Clifford Theorem to identify the posterior conditionals which only depend locally on the neighboring blocks. We outline computational strategies to evaluate the conditionals, which are the target densities in the Gibbs updates, locally and in parallel. In two numerical experiments, we validate the dimension-independent properties of the MLwG algorithm and demonstrate its superior performance over MALA.

math.NA

Sampling Strategies in Bayesian Inversion: A Study of RTO and Langevin Methods

This paper studies two classes of sampling methods for the solution of inverse problems, namely Randomize-Then-Optimize (RTO), which is rooted in sensitivity analysis, and Langevin methods, which are rooted in the Bayesian framework. The two classes of methods correspond to different assumptions and yield samples from different target distributions. We highlight the main conceptual and theoretical differences between the two approaches and compare them from a practical point of view by tackling two classical inverse problems in imaging: deblurring and inpainting. We show that the choice of the sampling method has a significant impact on the quality of the reconstruction and that the RTO method is more robust to the choice of the parameters.

eess.IV

The Geometry and Well-Posedness of Sparse Regularized Linear Regression

In this work, we study the well-posedness of certain sparse regularized linear regression problems, i.e., the existence, uniqueness and continuity of the solution map with respect to the data. We focus on regularization functions that are convex piecewise linear, i.e., whose epigraph is polyhedral. This includes total variation on graphs and polyhedral constraints. We provide a geometric framework for these functions based on their connection to polyhedral sets and apply this to the study of the well-posedness of the corresponding sparse regularized linear regression problem. Particularly, we provide geometric conditions for well-posedness of the regression problem, compare these conditions to those for smooth regularization, and show the computational difficulty of verifying these conditions.

math.ST

Continuous Gaussian mixture solution for linear Bayesian inversion with application to Laplace priors

We focus on Bayesian inverse problems with Gaussian likelihood, linear forward model, and priors that can be formulated as a Gaussian mixture. Such a mixture is expressed as an integral of Gaussian density functions weighted by a mixing density over the mixing variables. Within this framework, the corresponding posterior distribution also takes the form of a Gaussian mixture, and we derive the closed-form expression for its posterior mixing density. To sample from the posterior Gaussian mixture, we propose a two-step sampling method. First, we sample the mixture variables from the posterior mixing density, and then we sample the variables of interest from Gaussian densities conditioned on the sampled mixing variables. However, the posterior mixing density is relatively difficult to sample from, especially in high dimensions. Therefore, we propose to replace the posterior mixing density by a dimension-reduced approximation, and we provide a bound in the Hellinger distance for the resulting approximate posterior. We apply the proposed approach to a posterior with Laplace prior, where we introduce two dimension-reduced approximations for the posterior mixing density. Our numerical experiments indicate that samples generated via the proposed approximations have very low correlation and are close to the exact posterior.

stat.CO

Inferring Object Boundaries and their Roughness with Uncertainty Quantification

This work describes a Bayesian framework for reconstructing the boundaries that represent targeted features in an image, as well as the regularity (i.e., roughness vs. smoothness) of these boundaries.This regularity often carries crucial information in many inverse problem applications, e.g., for identifying malignant tissues in medical imaging. We represent the boundary as a radial function and characterize the regularity of this function by means of its fractional differentiability. We propose a hierarchical Bayesian formulation which, simultaneously, estimates the function and its regularity, and in addition we quantify the uncertainties in the estimates. Numerical results suggest that the proposed method is a reliable approach for estimating and characterizing object boundaries in imaging applications, as illustrated with examples from X-ray CT and image inpainting. We also show that our method is robust under various noise types, noise levels, and incomplete data.

math.NA

Sparse Bayesian Inference with Regularized Gaussian Distributions

Regularization is a common tool in variational inverse problems to impose assumptions on the parameters of the problem. One such assumption is sparsity, which is commonly promoted using lasso and total variation-like regularization. Although the solutions to many such regularized inverse problems can be considered as points of maximum probability of well-chosen posterior distributions, samples from these distributions are generally not sparse. In this paper, we present a framework for implicitly defining a probability distribution that combines the effects of sparsity imposing regularization with Gaussian distributions. Unlike continuous distributions, these implicit distributions can assign positive probability to sparse vectors. We study these regularized distributions for various regularization functions including total variation regularization and piecewise linear convex functions. We apply the developed theory to uncertainty quantification for Bayesian linear inverse problems and derive a Gibbs sampler for a Bayesian hierarchical model. To illustrate the difference between our sparsity-inducing framework and continuous distributions, we apply our framework to small-scale deblurring and computed tomography examples.

math.ST

Uncertainty Quantification of Inclusion Boundaries in the Context of X-ray Tomography

In this work, we describe a Bayesian framework for reconstructing the boundaries of piecewise smooth regions in the X-ray computed tomography (CT) problem in an infinite-dimensional setting. In addition to the reconstruction, we are also able to quantify the uncertainty of the predicted boundaries. Our approach is goal oriented, meaning that we directly detect the discontinuities from the data, instead of reconstructing the entire image. This drastically reduces the dimension of the problem, which makes the application of Markov Chain Monte Carlo (MCMC) methods feasible. We show that our method provides an excellent platform for challenging X-ray CT scenarios (e.g., in case of noisy data, limited angle, or sparse angle imaging). We investigate the performance and accuracy of our method on synthetic data as well as on real-world data. The numerical results indicate that our method provides an accurate method in detecting boundaries of piecewise smooth regions and quantifies the uncertainty in the prediction.

math.NA

Bayesian Inference with Projected Densities

Constraints are a natural choice for prior information in Bayesian inference. In various applications, the parameters of interest lie on the boundary of the constraint set. In this paper, we use a method that implicitly defines a constrained prior such that the posterior assigns positive probability to the boundary of the constraint set. We show that by projecting posterior mass onto the constraint set, we obtain a new posterior with a rich probabilistic structure on the boundary of that set. If the original posterior is a Gaussian, then such a projection can be done efficiently. We apply the method to Bayesian linear inverse problems, in which case samples can be obtained by repeatedly solving constrained least squares problems, similar to a MAP estimate, but with perturbations in the data. When combined into a Bayesian hierarchical model and the constraint set is a polyhedral cone, we can derive a Gibbs sampler to efficiently sample from the hierarchical model. To show the effect of projecting the posterior, we applied the method to deblurring and computed tomography examples.

math.ST

Horseshoe priors for edge-preserving linear Bayesian inversion

In many large-scale inverse problems, such as computed tomography and image deblurring, characterization of sharp edges in the solution is desired. Within the Bayesian approach to inverse problems, edge-preservation is often achieved using Markov random field priors based on heavy-tailed distributions. Another strategy, popular in statistics, is the application of hierarchical shrinkage priors. An advantage of this formulation lies in expressing the prior as a conditionally Gaussian distribution depending of global and local hyperparameters which are endowed with heavy-tailed hyperpriors. In this work, we revisit the shrinkage horseshoe prior and introduce its formulation for edge-preserving settings. We discuss a sampling framework based on the Gibbs sampler to solve the resulting hierarchical formulation of the Bayesian inverse problem. In particular, one of the conditional distributions is high-dimensional Gaussian, and the rest are derived in closed form by using a scale mixture representation of the heavy-tailed hyperpriors. Applications from imaging science show that our computational procedure is able to compute sharp edge-preserving posterior point estimates with reduced uncertainty.

stat.CO

A hybrid Gibbs sampler for edge-preserving tomographic reconstruction with uncertain view angles

In computed tomography, data consist of measurements of the attenuation of X-rays passing through an object. The goal is to reconstruct the linear attenuation coefficient of the object's interior. For each position of the X-ray source, characterized by its angle with respect to a fixed coordinate system, one measures a set of data referred to as a view. A common assumption is that these view angles are known, but in some applications they are known with imprecision. We propose a framework to solve a Bayesian inverse problem that jointly estimates the view angles and an image of the object's attenuation coefficient. We also include a few hyperparameters that characterize the likelihood and the priors. Our approach is based on a Gibbs sampler where the associated conditional densities are simulated using different sampling schemes - hence the term hybrid. In particular, the conditional distribution associated with the reconstruction is nonlinear in the image pixels, non-Gaussian and high-dimensional. We approach this distribution by constructing a Laplace approximation that represents the target conditional locally at each Gibbs iteration. This enables sampling of the attenuation coefficients in an efficient manner using iterative reconstruction algorithms. The numerical results show that our algorithm is able to jointly identify the image and the view angles, while also providing uncertainty estimates of both. We demonstrate our method with 2D X-ray computed tomography problems using fan beam configurations.

stat.CO

A fast method for simultaneous reconstruction and segmentation in X-ray CT application

In this paper, we propose a fast method for simultaneous reconstruction and segmentation (SRS) in X-ray computed tomography (CT). Our work is based on the SRS model where Bayes' rule and the maximum a posteriori (MAP) are used on hidden Markov measure field model (HMMFM). The original method leads to a logarithmic-summation (log-sum) term, which is non-separable to the classification index. The minimization problem in the model was solved by using constrained gradient descend method, Frank-Wolfe algorithm, which is very time-consuming especially when dealing with large-scale CT problems. The starting point of this paper is the commutativity of log-sum operations, where the log-sum problem could be transformed into a sum-log problem by introducing an auxiliary variable. The corresponding sum-log problem for the SRS model is separable. After applying alternating minimization method, this problem turns into several easy-to-solve convex sub-problems. In the paper, we also study an improved model by adding Tikhonov regularization, and give some convergence results. Experimental results demonstrate that the proposed algorithms could produce comparable results with the original SRS method with much less CPU time.

cs.CV

Fixing Nonconvergence of Algebraic Iterative Reconstruction with an Unmatched Backprojector

We consider algebraic iterative reconstruction methods with applications in image reconstruction. In particular, we are concerned with methods based on an unmatched projector/backprojector pair; i.e., the backprojector is not the exact adjoint or transpose of the forward projector. Such situations are common in large-scale computed tomography, and we consider the common situation where the method does not converge due to the nonsymmetry of the iteration matrix. We propose a modified algorithm that incorporates a small shift parameter, and we give the conditions that guarantee convergence of this method to a fixed point of a slightly perturbed problem. We also give perturbation bounds for this fixed point. Moreover, we discuss how to use Krylov subspace methods to efficiently estimate the leftmost eigenvalue of a certain matrix to select a proper shift parameter. The modified algorithm is illustrated with test problems from computed tomography.

math.NA

Tomographic Reconstruction with Spatially Varying Parameter Selection

In this paper we propose a new approach for tomographic reconstruction with spatially varying regularization parameter. Our work is based on the SA-TV image restoration model proposed in [3] where an automated parameter selection rule for spatially varying parameter has been proposed. Their parameter selection rule, however, only applies if measured imaging data are defined in image domain, e.g. for image denoising and image deblurring problems. By introducing an auxiliary variable in their model we show here that this idea can indeed by extended to general inverse imaging problems such as tomographic reconstruction where measurements are not in image domain. We demonstrate the validity of the proposed approach and its effectiveness for computed tomography reconstruction, delivering reconstruction results that are significantly improved compared the state-of-the-art.

math.NA

Tomographic Reconstruction Methods for Decomposing Directional Components

Decomposition of tomographic reconstructions has many different practical application. We propose two new reconstruction methods that combines the task of tomographic reconstruction with object decomposition. We demonstrate these reconstruction methods in the context of decomposing directional objects into various directional components. Furthermore we propose a method for estimating the main direction in a directional object, directly from the measured computed tomography data. We demonstrate all the proposed methods on simulated and real samples to show their practical applicability. The numerical tests show that decomposition and reconstruction can combined to achieve a highly useful fibre-crack decomposition.

cs.CE