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Yixuan Yang

Publications and source records attributed to Yixuan Yang.

At least 19 recordsLinked to original sources

Learning a Continuous Sepsis Severity Score Without Hour-by-Hour Supervision: A Two-Site Retrospective Study

Currently used sepsis severity indices rely on fixed variables and weights established decades ago, which are coarsely discretized and calibrated to a cohort that no longer reflects contemporary critical care. No alternative learned directly from patient trajectories is in routine use. We conducted a retrospective two-cohort study on a total of 29,116 and 7,691 adult patients meeting Sepsis-3 criteria from two hospital systems in Massachusetts and Georgie, respectively. We developed a sepsis index using 43 routinely charted variables over a 72-hour treatment window. Unlike previous studies, we use mortality as a treatment-level ranking signal rather than a per-state target, allowing credit to be redistributed non-uniformly across timesteps. Evaluation was done on a permanent 20% test holdout, using clinical vignettes and Spearman correlation. Uncertainty intervals were obtained by bootstrap resampling of whole patients. Under this ranking scheme, non-survivors scored 1.19-1.64 points higher than survivors on a 0-10 scale within all strata of baseline SOFA-2, with similar results stratifying within lactate, mean arterial pressure (MAP), and creatinine. Within-patient change in the index correlated with change in lactate (Spearman rho = 0.39; n = 1,854). Similar, weaker correlations were found for MAP and creatinine. On a cohort level, cross-institutional agreement measured by Spearman correlation between models trained on different sites, were 70-77% of same-site correlation. External within-patient correlations were 0.54 and 0.59 against ceilings of 0.92 and 0.90. Our index also correlated with established indices, while null controls stayed near zero. Our index demonstrated hourly prognostic information that meaningfully separates patient outcomes and is consistent with clinical expectation, indicating potential as a decision support tool complementing clinical judgement.

cs.AI

DreamTraj: Generating 6-DoF Object Trajectories by Reading Unrendered Video Diffusion Latents

Accurate prediction of object trajectories during manipulation is essential for closing the perception-action loop. Progress is limited on two fronts: available datasets lack fine-grained language-to-motion annotations, and existing predictors either rely on privileged inputs such as video, depth, or CAD models, or recover motion from fully generated videos through costly, error-prone perception pipelines. We close the supervision gap with the MOVE dataset, 5,038 object-centric egocentric trajectories, each paired with a fine-grained natural-language instruction rather than a coarse verb-noun label. We further propose DreamTraj, which predicts a 6-DoF object trajectory from a single RGB image and a task instruction, requiring no video, depth, or CAD model at inference: rather than generating a video, it reads motion from the internal representations of a frozen image-to-video diffusion model at an early denoising step. A lightweight flow-matching Reader decodes query-key attention tracks and pooled hidden states into relative 6-DoF poses. To our knowledge, this is the first approach to directly decode object 6-DoF trajectories from intermediate video diffusion representations rather than generated pixels. DreamTraj sets a new state of the art on both translation and rotation against forecasters that consume multi-frame or privileged inputs, and runs 4.6x faster than generate-then-extract pipelines.

cs.CV

Trans2Occ: Voxel Occupancy Estimation and Grasp for Transparent Objects from Simulation to Reality

Transparent objects remain challenging for robotic perception due to unreliable depth sensing caused by refraction and reflection. While prior approaches rely on multi-view reconstruction or depth completion, they are often difficult to scale or deploy in real-world robotic systems. In this paper, we present a practical framework for transparent object perception and manipulation based on single-view RGB input. Our approach predicts voxel-space occupancy directly from a single image, providing a geometry-aware representation that supports downstream robotic grasping. To enable large-scale training, we construct a simulation pipeline that generates paired RGB images and voxel occupancy annotations under diverse materials and lighting conditions. We demonstrate that the predicted occupancy representation is robust to domain shifts and transfers effectively from simulation to real-world robotic setups without fine-tuning. A simple rule-based grasping strategy built on top of the occupancy further achieves reliable grasp performance on transparent objects. Extensive experiments in both simulation and real-world environments show that our framework provides accurate 3D understanding and enables practical manipulation of transparent objects. These results suggest that single-view occupancy prediction offers a scalable and effective solution for transparent object perception in robotics.

cs.RO

Isotropic fabrication of centimeter-scale, low propagation-loss periodically poled lithium niobate nanophotonic waveguides for efficient second harmonic generation

Periodically poled lithium niobate (PPLN) nanophotonic waveguides that simultaneously feature low propagation-loss and uniform periodic poling are essential for a wide range of applications ranging from classical nonlinear frequency-conversion to scalable integrated quantum technology. However, fabrication imperfections have frequently limited the propagation loss of fully domain-inverted PPLN nanophotonic waveguides to a few dB/cm, primarily due to anisotropic etching issue, thereby restricting the absolute conversion efficiency and scale of photonic integration. Here, we present a fabrication approach that overcomes this challenge, yielding a 1.2-cm-long PPLN nanophotonic waveguide with low propagation loss via femtosecond-laser photolithography-assisted chemo-mechanical etching (PLACE). By carrying out domain inversion on a planar thin-film prior to waveguide definition, electric-field distortion is minimized during poling, while isotropic etching of the waveguide is achieved by PLACE with an average surface roughness of only 0.34 nm, resulting in uniform poling of duty cycle of 50% and a record-low propagation loss of 0.042 dB/cm in the telecom band. Under continuous-wave pumping at 1525 nm, the device demonstrates a high normalized quasi-phase-matched SHG conversion efficiency of 2021%/W, and an absolute conversion efficiency of 64% at a pump power of 86 mW which represents the state of the art for single-period PPLN nanophotonic waveguides.

physics.optics

Convergence of Spectral Descent for Non-smooth Optimization

The Muon optimizer has recently demonstrated remarkable empirical success in training large language models. However, the theoretical understanding of its mechanisms remains limited. Current convergence guarantees for Muon rely heavily on smoothness assumptions, leaving its non-smooth convergence behavior largely unexplored. In this work, we take a step toward bridging this gap by investigating Spectral Descent (SD), a simplified variant of Muon, together with its truncated counterpart, Truncated Spectral Descent (TSD). Under convexity, Lipschitz continuity, and sharpness conditions, we establish global linear convergence for both SD and TSD in non-smooth convex formulations. We also study regularized variants equipped with decoupled weight decay and derive sublinear convergence guarantees through their connection with Frank-Wolfe methods. Finally, we apply our theoretical framework to robust low-rank matrix recovery under mixed sparse and dense noise regimes and provide rigorous recovery guarantees. Numerical experiments support the theoretical findings and demonstrate the effectiveness of Muon-type methods for non-smooth optimization.

cs.LG

Toward Native Multimodal Modeling: A Roadmap

Multimodal modeling represents a vital step from modality-agnostic reasoning toward world modeling. While early approaches predominantly rely on late-fusion that assembles encoders and frozen language backbones with output heads, recent efforts have shifted the paradigm toward native multimodal modeling (NMM) with the intrinsic integration of modalities for superior multimodal performance. Despite its potential, the design space of native architectures remains insufficiently defined. In this paper, we present the community with a formalized roadmap for this transition. Specifically, we formally define the architectural nativity, distinguishing mid-fusion and early-fusion from non-native paradigms. We further organize the existing native models through the lens of input-output duality into three categories: (i) Multi-to-Text for cross-modal comprehension with text-only output; (ii) Multi-to-Target for scenario-oriented generation, e.g., image, audio and video generation, and (iii) Multi-to-Multi for unified modeling with symmetric input-output. We deliver a comprehensive and industrial-grade investigation into the transition toward the definitive NMM framework, where understanding and generation seamlessly coexist within a unified transformer paradigm. We systematically unpack the end-to-end pipeline from industrial perspectives from architectural coordination, massive data curation, to full-stack training recipes, inference & deployment, and the comprehensive evaluation for truly native modeling.

cs.CV

Code-as-Room: Generating 3D Rooms from Top-Down View Images via Agentic Code Synthesis

Designing realistic and functional 3D indoor rooms is essential for a wide range of applications, including interior design, virtual reality, gaming, and embodied AI. While recent MLLM-based approaches have shown great potential for 3D room synthesis from textual descriptions or reference images, text-based methods struggle to capture precise spatial information, and existing image-conditioned agents suffer from instability and infinite looping when tasked with holistic room generation from top-down views. To address these limitations, we propose Code-as-Room, an MLLM-based agentic framework equipped with a structured execution harness, which represents 3D rooms with Blender codes. Given a top-down room image, the framework parses the reference image to extract scene elements and their spatial relationships, and synthesizes executable Blender code for geometry, materials, and lighting in a principled, multi-stage pipeline. A cross-stage memory module is maintained throughout to mitigate context forgetting inherent to existing agent-based frameworks. We further introduce a dedicated benchmark for code-based 3D room synthesis, encompassing various evaluation protocols. Based on our benchmark, comprehensive comparisons against existing agent-based methods are conducted to validate the effectiveness of our proposed execution harness.

cs.CV

STABLE: Simulation-Ready Tabletop Layout Generation via a Semantics-Physics Dual System

Generating simulation-ready tabletop scenes from task instructions is an intriguing and promising research direction in the field of Embodied AI. However, existing task-to-scene generation methods rely exclusively on large language models (LLMs) to predict scene layouts, inevitably yielding object collisions or floating due to LLMs' inherent limitations in 3D spatial reasoning. In this paper, we present STABLE, a semantics-physics dual-system tailored for simulation-ready tabletop scene generation. STABLE consists of two complementary modules: (i) a Semantic Reasoner, a fine-tuned LLM trained on a structured tabletop scene dataset to generate coarse layouts from input task instructions, and (ii) a Physics Corrector, a physics-aware flow-based denoising model that outputs pose updates to refine layouts, which ensures the physical plausibility of scenes while preserves semantic alignment with task instructions. STABLE adopts a progressive generation paradigm: by alternating between the Semantic Reasoner and Physics Corrector, it incrementally expands the scene from task-critical objects to background objects. Experiments demonstrate that STABLE successfully generates simulation-ready tabletop scenes that strictly conform to task instructions and significantly enhances the physical validity of scenes over prior art.

cs.CV

Clin-JEPA: A Multi-Phase Co-Training Framework for Joint-Embedding Predictive Pretraining on EHR Patient Trajectories

We present Clin-JEPA, a multi-phase co-training framework for joint-embedding predictive (JEPA) pretraining on EHR patient trajectories. JEPA architectures have enabled latent-space planning in robotics and high-quality representation learning in vision, but extending the paradigm to EHR data -- to obtain a single backbone that simultaneously forecasts patient trajectories and serves diverse downstream risk-prediction tasks without per-task fine-tuning -- remains an open challenge. Existing JEPA frameworks either discard the predictor after pretraining (I-JEPA, V-JEPA) or train it on a frozen pretrained encoder (V-JEPA 2-AC), leaving the encoder unaware of the rollout signal that the retained predictor must use at inference; co-training the encoder and predictor under a shared JEPA prediction objective would supply this grounding, but na\"ive co-training is unstable, with representation collapse and online/target drift causing autoregressive rollout to diverge. Clin-JEPA's five-phase pretraining curriculum -- predictor warmup, joint refinement, EMA target alignment, hard sync, and predictor finalization -- addresses each failure mode by phase, stably co-training a Qwen3-8B-based encoder and a 92M-parameter latent trajectory predictor. On MIMIC-IV ICU data, three independent evaluations support the framework: (1) latent $\ell_1$ rollout drift uniquely converges ($-$15.7%) over 48-hour horizons while baselines and ablations diverge (+3% to +4951%); (2) the encoder learns a clinically discriminative latent geometry (deteriorating-patient cohorts displace 4.83$\times$ further than stable patients in latent space, vs $\leq$2.62$\times$ for baseline encoders); (3) a single backbone outperforms strong tabular and sequence baselines on multi-task downstream evaluation. Clin-JEPA achieves mean AUROC 0.851 on ICareFM EEP and 0.883 on 8 binary risk tasks (+0.038 and +0.041 vs baseline average).

cs.LG

How Label Imbalance Shapes Geometry: A General Spectral Analysis of Multi-Label Neural Collapse

This work investigates the phenomenon of Neural Collapse (NC) in multi-label classification, extending its conceptual framework from multi-class learning to general correlated and imbalanced multi-label settings. Although recent studies have identified a ''tag-wise averaging'' structure for multi-label features, this view relies on implicit assumptions of label balance and combinatorial symmetry. Consequently, it fails to account for the geometrical distortions caused by intrinsic label correlations and data imbalance, which are common in practice. We resolve the multiplicity-one imbalance conjecture raised by Li et al. (2024), showing that higher-multiplicity prototypes obey a class-frequency-weighted synthesis rule rather than uniform averaging. To address this, we propose a rigorous spectral-control framework to analyze the terminal phase of multi-label learning under general imbalanced conditions. We introduce the label covariance spectrum $\kappa_m$, a scalar controlling the distribution-dependent lower-bound geometry, derived from the second-order moment matrix of the label distribution. Contrary to the averaging perspective, our analysis reveals that the centered label covariance spectrum controls the stability of terminal geometry by quantifying the weakest centered inter-class contrast directions. We prove that the classical Tag-wise Averaging emerges only as a special case under perfect orthogonality. Numerical experiments on synthetic distributions validate our theoretical bounds. This work resolves the scaled-average aspect of the imbalance conjecture and establishes a unifying theoretical framework that extends Neural Collapse to complex, imbalanced multi-label settings.

cs.LG

GEAR: Geography-knowledge Enhanced Analog Recognition Framework in Extreme Environments

The Mariana Trench and the Qinghai-Tibet Plateau exhibit significant similarities in geological origins and microbial metabolic functions. Given that deep-sea biological sampling faces prohibitive costs, recognizing structurally homologous terrestrial analogs of the Mariana Trench on the Qinghai-Tibet Plateau is of great significance. Yet, no existing model adequately addresses cross-domain topographic similarity retrieval, either neglecting geographical knowledge or sacrificing computational efficiency. To address these challenges, we present \underline{\textbf{G}}eography-knowledge \underline{\textbf{E}}nhanced \underline{\textbf{A}}nalog \underline{\textbf{R}}ecognition (\textbf{GEAR}) Framework, a three-stage pipeline designed to efficiently retrieve analogs from 2.5 million square kilometers of the Qinghai-Tibet Plateau: (1) Skeleton guided Screening and Clipping: Recognition of candidate valleys and initial screening based on size and linear morphological criteria. (2) Physics aware Filtering: The Topographic Waveform Comparator (TWC) and Morphological Texture Module (MTM) evaluate the waveform and texture and filter out inconsistent candidate valleys. (3) Graph based Fine Recognition: We design a \underline{\textbf{M}}orphology-integrated \underline{\textbf{S}}iamese \underline{\textbf{G}}raph \underline{\textbf{N}}etwork (\textbf{MSG-Net}) based on geomorphological metrics. Correspondingly, we release an expert-annotated topographic similarity dataset targeting tectonic collision zones. Experiments demonstrate the effectiveness of every stage. Besides, MSG-Net achieved an F1-Score 1.38 percentage points higher than the SOTA baseline. Using features extracted by MSG-Net, we discovered a significant correlation with biological data, providing evidence for future biological analysis.

cs.CV

Monolithic tantalum pentoxide microrings with intrinsic Q factors exceeding 4X10(6)

Tantalum pentoxide (Ta2O5), as a silicon-photonic-compatible material platform, has garnered significant attention for high-performance integrated photonics due to its exceptional properties: a broad transparency window spanning from 0.28 um to 8 um, a moderate refractive index of 2.05 at 1550 nm, and an impressive nonlinear refractive index of 7.2X10^(-19) m^2/W. Despite these advantages, achieving low-loss fabrication of monolithic microrings on the Ta2O5 platform remains challenging due to its inherent hardness and brittleness, which often result in rough sidewalls and significant scattering losses. In this work, we successfully demonstrated monolithic Ta2O5 microring resonators with exceptionally high intrinsic and loaded quality (Q) factors. This was accomplished through the innovative application of photolithography-assisted chemo-mechanical etching (PLACE) technology. By optimizing the coupling region between the microring and the bus waveguide, as well as meticulously controlling surface roughness during fabrication, we achieved near-critical coupling in the resulting microrings. The devices exhibited loaded Q factors of 2.74X10(6) in the telecom band without employing expensive electron-beam lithography, showing an intrinsic Q factor as high as 4.47X10(6) and a low propagation loss of only 0.0732 dB/cm - representing the highest results reported for strongly confined Ta2O5-based microring resonators to date. This work paves the way for the development of advanced photonic devices on the Ta2O5 platform with low manufacturing cost, including low-threshold microlasers, highly sensitive sensors, broad bandwidth supercontinuum sources, and optical frequency combs.

physics.optics

Highly efficient multi-chromatic Raman microlasers from cavity polygon modes on thin-film lithium niobate platform

The integration of stimulated Raman scattering (SRS) and second order nonlinearity in non-centrosymmetric photonic microresonators presents a highly promising solution for developing on-chip coherent light sources with exceptional bandwidth and flexible tunability. Our study introduces an innovative methodology leveraging cavity polygon modes within an X-cut thin-film lithium niobate microdisk to achieve highly efficient multi-chromatic Raman microlasers. Specifically, high-Q square modes characterized by two parallel sides oriented perpendicularly relative to the optical axis of lithium niobate crystal were excited. These modes offer distinct advantages, including enhancing both mode-field overlap and improved phase matching, achieved through the utilization of the largest second-order susceptibility component (d_33), which is critical for Raman-quadratic nonlinear interactions. The experimental results highlight significant advancements in multi-wavelength multi-wavelength laser generation, with forward stimulated Raman laser signals exhibiting a high conversion efficiency of up to 65.02% and an impressively narrow integral linewidth of only 5.2 kHz. Simultaneously, our system enables the generation of multi-wavelength Raman-quadratic laser signals across the ~800 nm and ~530 nm spectral bands. These findings are further underscored by an impressive absolute conversion efficiency of 1.33% for the 797.4-nm Raman laser, achieved at a remarkably low pump power of just 1.07 mW. This work not only extends the application scope of cavity polygon modes from single second/third-order nonlinear optical processes to cascaded processes but also establishes a foundation for realizing high-efficiency on-chip multi-chromatic laser sources with versatile functionalities.

physics.optics

Simultaneous generation of Raman-assisted Soliton Microcombs and Tunable Multi-chromatic Raman Microlasers in Single Monolithic Thin-film Lithium Niobate Microrings

High-performance integrated broadband coherent light sources are essential for advanced applications in high-bandwidth data processing and chip-scale metrology, yet remain challenging. In this study, we demonstrate a monolithic Z-cut lithium niobate on insulator (LNOI) microring platform that enables simultaneous generation of tunable multi-chromatic microlasers and Raman-assisted soliton microcombs. Exploiting the strong Raman activity and high second-order nonlinearity of LNOI, we engineered a dispersion-optimized microring with a loaded Q factor of 3.86X10^6, facilitating on-chip efficient broadband coherent light source. A novel phase-matching configuration with all the waves of the same ordinary polarization was realized for the first time in this platform, feasibly enabling modal-phase matched Raman-quadratic nonlinear processes that extend lasing signals into the visible spectrum. Under continuous-wave laser pumping at 3.73 mW in the telecom band, we achieved a Raman-assisted soliton comb centered at 1624.49 nm with record-low pump threshold on the LNOI platform. Concurrently, multi-chromatic Raman lasing outputs were observed at ~1700, ~813, and ~535 nm within the same microring. The system exhibited efficient wavelength tuning of these multi-chromatic laser signals through a 5 nm shift in pump wavelength. This work represents a significant advance in integrated photonics for versatile optical signal generation.

physics.optics

ArtiWorld: LLM-Driven Articulation of 3D Objects in Scenes

Building interactive simulators and scalable robot-learning environments requires a large number of articulated assets. However, most existing 3D assets in simulation are rigid, and manually converting them into articulated objects is extremely labor- and cost-intensive. This raises a natural question: can we automatically identify articulable objects in a scene and convert them into articulated assets directly? In this paper, we present ArtiWorld, a scene-aware pipeline that localizes candidate articulable objects from textual scene descriptions and reconstructs executable URDF models that preserve the original geometry. At the core of this pipeline is Arti4URDF, which leverages 3D point cloud, prior knowledge of a large language model (LLM), and a URDF-oriented prompt design to rapidly convert rigid objects into interactive URDF-based articulated objects while maintaining their 3D shape. We evaluate ArtiWorld at three levels: 3D simulated objects, full 3D simulated scenes, and real-world scan scenes. Across all three settings, our method consistently outperforms existing approaches and achieves state-of-the-art performance, while preserving object geometry and correctly capturing object interactivity to produce usable URDF-based articulated models. This provides a practical path toward building interactive, robot-ready simulation environments directly from existing 3D assets. Code and data will be released.

cs.CV

BALR-SAM: Boundary-Aware Low-Rank Adaptation of SAM for Resource-Efficient Medical Image Segmentation

Vision foundation models like the Segment Anything Model (SAM), pretrained on large-scale natural image datasets, often struggle in medical image segmentation due to a lack of domain-specific adaptation. In clinical practice, fine-tuning such models efficiently for medical downstream tasks with minimal resource demands, while maintaining strong performance, is challenging. To address these issues, we propose BALR-SAM, a boundary-aware low-rank adaptation framework that enhances SAM for medical imaging. It combines three tailored components: (1) a Complementary Detail Enhancement Network (CDEN) using depthwise separable convolutions and multi-scale fusion to capture boundary-sensitive features essential for accurate segmentation; (2) low-rank adapters integrated into SAM's Vision Transformer blocks to optimize feature representation and attention for medical contexts, while simultaneously significantly reducing the parameter space; and (3) a low-rank tensor attention mechanism in the mask decoder, cutting memory usage by 75% and boosting inference speed. Experiments on standard medical segmentation datasets show that BALR-SAM, without requiring prompts, outperforms several state-of-the-art (SOTA) methods, including fully fine-tuned MedSAM, while updating just 1.8% (11.7M) of its parameters.

cs.CV

MCPSecBench: A Systematic Security Benchmark and Playground for Testing Model Context Protocols

Large Language Models (LLMs) are increasingly integrated into real-world applications via the Model Context Protocol (MCP), a universal open standard for connecting AI agents with data sources and external tools. While MCP enhances the capabilities of LLM-based agents, it also introduces new security risks and significantly expands their attack surface. In this paper, we present the first formalization of a secure MCP and its required specifications. Based on this foundation, we establish a comprehensive MCP security taxonomy that extends existing models by incorporating protocol-level and host-side threats, identifying 17 distinct attack types across four primary attack surfaces. Building on these specifications, we introduce MCPSecBench, a systematic security benchmark and playground that integrates prompt datasets, MCP servers, MCP clients, attack scripts, a GUI test harness, and protection mechanisms to evaluate these threats across three major MCP platforms. MCPSecBench is designed to be modular and extensible, allowing researchers to incorporate custom implementations of clients, servers, and transport protocols for rigorous assessment. Our evaluation across three major MCP platforms reveals that all attack surfaces yield successful compromises. Core vulnerabilities universally affect Claude, OpenAI, and Cursor, while server-side and specific client-side attacks exhibit considerable variability across different hosts and models. Furthermore, current protection mechanisms proved largely ineffective, achieving an average success rate of less than 30%. Overall, MCPSecBench standardizes the evaluation of MCP security and enables rigorous testing across all protocol layers.

cs.CR

Visible Brillouin-quadratic microlaser in a high-Q thin-film lithium niobate microdisk

Narrow-linewidth lasers at short/visible wavelengths are crucial for quantum and atomic applications, such as atomic clocks, quantum computing, atomic and molecular spectroscopy, and quantum sensing. However, such lasers are often only accessible in bulky tabletop systems and remain scarce in integrated photonic platform. Here, we report an on-chip visible Brillouin-quadratic microlaser in a 117-um-diameter thin-film lithium niobate (TFLN) microdisk via dispersion engineering. Enabled by the ultra-high Q factor of 4.0X10(6) and small mode volume, strong photon-phonon interaction and high second-order nonlinearity of the TFLN microdisk, narrow-linewidth Stokes Brillouin lasing (SBL) is demonstrated with 10.17 GHz Brillouin shift under a 1560-nm pump, exhibiting a short-term narrow linewidth of 254 Hz and a low threshold of only 1.81 mW. Meanwhile, efficient second harmonic generation (SHG) of the SBL signal is also observed at 780 nm, with a normalized conversion efficiency of 3.61%/mW, made possible by simultaneous phase matching fulfillments for both narrow-linewidth SBL and its SHG. This demonstration of an integrated ultra-narrow linewidth visible wavelength Brillouin-quadratic lasers opens new avenues toward chip-scale quantum information processing and precise metrology.

physics.optics