arXiv subjects

Yizhou Sun

Publications and source records attributed to Yizhou Sun.

At least 73 records · Page 4Linked to original sources

arXiv2025

STIV: Scalable Text and Image Conditioned Video Generation

The field of video generation has made remarkable advancements, yet there remains a pressing need for a clear, systematic recipe that can guide the development of robust and scalable models. In this work, we present a comprehensive study that systematically explores the interplay of model architectures, training recipes, and data curation strategies, culminating in a simple and scalable text-image-conditioned video generation method, named STIV. Our framework integrates image condition into a Diffusion Transformer (DiT) through frame replacement, while incorporating text conditioning via a joint image-text conditional classifier-free guidance. This design enables STIV to perform both text-to-video (T2V) and text-image-to-video (TI2V) tasks simultaneously. Additionally, STIV can be easily extended to various applications, such as video prediction, frame interpolation, multi-view generation, and long video generation, etc. With comprehensive ablation studies on T2I, T2V, and TI2V, STIV demonstrate strong performance, despite its simple design. An 8.7B model with 512 resolution achieves 83.1 on VBench T2V, surpassing both leading open and closed-source models like CogVideoX-5B, Pika, Kling, and Gen-3. The same-sized model also achieves a state-of-the-art result of 90.1 on VBench I2V task at 512 resolution. By providing a transparent and extensible recipe for building cutting-edge video generation models, we aim to empower future research and accelerate progress toward more versatile and reliable video generation solutions.

cs.CV↗

arXiv2025

Lossless Token Sequence Compression via Meta-Tokens

Existing work on prompt compression for Large Language Models (LLM) focuses on lossy methods that try to maximize the retention of semantic information that is relevant to downstream tasks while significantly reducing the sequence length. In this paper, we introduce a task-agnostic lossless compression technique similar to LZ77 that makes it possible to reduce the input token sequence length on average by 27\% and 18\% for the two evaluation tasks explored here. Given that we use transformer-based LLMs, this equates to 47\% and 33\% less encoding computation, respectively, due to the quadratic nature of attention. The token sequence transformation is trivial to reverse and highlights that no semantic information is lost in the process. We evaluate our proposed approach on two tasks that require strict preservation of semantics/syntax and demonstrate that existing lossy compression methods perform poorly in this setting. We find that our lossless compression technique produces only a small gap in performance compared to using the uncompressed input and posit that larger models and an expanded computing budget would likely erase the gap entirely.

cs.CL↗

arXiv2025

Agree to Disagree? A Meta-Evaluation of LLM Misgendering

Numerous methods have been proposed to measure LLM misgendering, including probability-based evaluations (e.g., automatically with templatic sentences) and generation-based evaluations (e.g., with automatic heuristics or human validation). However, it has gone unexamined whether these evaluation methods have convergent validity, that is, whether their results align. Therefore, we conduct a systematic meta-evaluation of these methods across three existing datasets for LLM misgendering. We propose a method to transform each dataset to enable parallel probability- and generation-based evaluation. Then, by automatically evaluating a suite of 6 models from 3 families, we find that these methods can disagree with each other at the instance, dataset, and model levels, conflicting on 20.2% of evaluation instances. Finally, with a human evaluation of 2400 LLM generations, we show that misgendering behaviour is complex and goes far beyond pronouns, which automatic evaluations are not currently designed to capture, suggesting essential disagreement with human evaluations. Based on our findings, we provide recommendations for future evaluations of LLM misgendering. Our results are also more widely relevant, as they call into question broader methodological conventions in LLM evaluation, which often assume that different evaluation methods agree.

cs.CL↗

arXiv2025

Iceberg: Enhancing HLS Modeling with Synthetic Data

Deep learning-based prediction models for High-Level Synthesis (HLS) of hardware designs often struggle to generalize. In this paper, we study how to close the generalizability gap of these models through pretraining on synthetic data and introduce Iceberg, a synthetic data augmentation approach that expands both large language model (LLM)-generated programs and weak labels of unseen design configurations. Our weak label generation method is integrated with an in-context model architecture, enabling meta-learning from actual and proximate labels. Iceberg improves the geometric mean modeling accuracy by $86.4\%$ when adapt to six real-world applications with few-shot examples and achieves a $2.47\times$ and a $1.12\times$ better offline DSE performance when adapting to two different test datasets. Our open-sourced code is here: https://github.com/UCLA-VAST/iceberg

cs.LG↗

arXiv2025

Graph Fourier Neural ODEs: Modeling Spatial-temporal Multi-scales in Molecular Dynamics

Accurately predicting long-horizon molecular dynamics (MD) trajectories remains a significant challenge, as existing deep learning methods often struggle to retain fidelity over extended simulations. We hypothesize that one key factor limiting accuracy is the difficulty of capturing interactions that span distinct spatial and temporal scales, ranging from high-frequency local vibrations to low-frequency global conformational changes. To address these limitations, we propose Graph Fourier Neural ODEs (GF-NODE), integrating a graph Fourier transform for spatial frequency decomposition with a Neural ODE framework for continuous-time evolution. Specifically, GF-NODE first decomposes molecular configurations into multiple spatial frequency modes using the graph Laplacian, then evolves the frequency components in time via a learnable Neural ODE module that captures both local and global dynamics, and finally reconstructs the updated molecular geometry through an inverse graph Fourier transform. By explicitly modeling high- and low-frequency phenomena in this unified pipeline, GF-NODE captures long-range correlations and local fluctuations more effectively. We provide theoretical insight through heat equation analysis on a simplified diffusion model, demonstrating how graph Laplacian eigenvalues can determine temporal dynamics scales, and crucially validate this correspondence through comprehensive empirical analysis on real molecular dynamics trajectories showing quantitative spatial-temporal correlations across diverse molecular systems. Experimental results on challenging MD benchmarks demonstrate that GF-NODE achieves state-of-the-art accuracy while preserving essential geometrical features over extended simulations. These findings highlight the promise of bridging spectral decomposition with continuous-time modeling to improve the robustness and predictive power of MD simulations.

cs.LG↗

arXiv2025

FUSE: Measure-Theoretic Compact Fuzzy Set Representation for Taxonomy Expansion

Taxonomy Expansion, which models complex concepts and their relations, can be formulated as a set representation learning task. The generalization of set, fuzzy set, incorporates uncertainty and measures the information within a semantic concept, making it suitable for concept modeling. Existing works usually model sets as vectors or geometric objects such as boxes, which are not closed under set operations. In this work, we propose a sound and efficient formulation of set representation learning based on its volume approximation as a fuzzy set. The resulting embedding framework, Fuzzy Set Embedding (FUSE), satisfies all set operations and compactly approximates the underlying fuzzy set, hence preserving information while being efficient to learn, relying on minimum neural architecture. We empirically demonstrate the power of FUSE on the task of taxonomy expansion, where FUSE achieves remarkable improvements up to 23% compared with existing baselines. Our work marks the first attempt to understand and efficiently compute the embeddings of fuzzy sets.

cs.LG↗

arXiv2025

A Comprehensive Survey in LLM(-Agent) Full Stack Safety: Data, Training and Deployment

The remarkable success of Large Language Models (LLMs) has illuminated a promising pathway toward achieving Artificial General Intelligence for both academic and industrial communities, owing to their unprecedented performance across various applications. As LLMs continue to gain prominence in both research and commercial domains, their security and safety implications have become a growing concern, not only for researchers and corporations but also for every nation. Currently, existing surveys on LLM safety primarily focus on specific stages of the LLM lifecycle, e.g., deployment phase or fine-tuning phase, lacking a comprehensive understanding of the entire "lifechain" of LLMs. To address this gap, this paper introduces, for the first time, the concept of "full-stack" safety to systematically consider safety issues throughout the entire process of LLM training, deployment, and eventual commercialization. Compared to the off-the-shelf LLM safety surveys, our work demonstrates several distinctive advantages: (I) Comprehensive Perspective. We define the complete LLM lifecycle as encompassing data preparation, pre-training, post-training, deployment and final commercialization. To our knowledge, this represents the first safety survey to encompass the entire lifecycle of LLMs. (II) Extensive Literature Support. Our research is grounded in an exhaustive review of over 800+ papers, ensuring comprehensive coverage and systematic organization of security issues within a more holistic understanding. (III) Unique Insights. Through systematic literature analysis, we have developed reliable roadmaps and perspectives for each chapter. Our work identifies promising research directions, including safety in data generation, alignment techniques, model editing, and LLM-based agent systems. These insights provide valuable guidance for researchers pursuing future work in this field.

cs.CR↗

arXiv2025

Open-Set Living Need Prediction with Large Language Models

Living needs are the needs people generate in their daily lives for survival and well-being. On life service platforms like Meituan, user purchases are driven by living needs, making accurate living need predictions crucial for personalized service recommendations. Traditional approaches treat this prediction as a closed-set classification problem, severely limiting their ability to capture the diversity and complexity of living needs. In this work, we redefine living need prediction as an open-set classification problem and propose PIGEON, a novel system leveraging large language models (LLMs) for unrestricted need prediction. PIGEON first employs a behavior-aware record retriever to help LLMs understand user preferences, then incorporates Maslow's hierarchy of needs to align predictions with human living needs. For evaluation and application, we design a recall module based on a fine-tuned text embedding model that links flexible need descriptions to appropriate life services. Extensive experiments on real-world datasets demonstrate that PIGEON significantly outperforms closed-set approaches on need-based life service recall by an average of 19.37%. Human evaluation validates the reasonableness and specificity of our predictions. Additionally, we employ instruction tuning to enable smaller LLMs to achieve competitive performance, supporting practical deployment.

cs.AI↗

arXiv2025

Learning to Compare Hardware Designs for High-Level Synthesis

High-level synthesis (HLS) is an automated design process that transforms high-level code into hardware designs, enabling the rapid development of hardware accelerators. HLS relies on pragmas, which are directives inserted into the source code to guide the synthesis process, and pragmas have various settings and values that significantly impact the resulting hardware design. State-of-the-art ML-based HLS methods, such as HARP, first train a deep learning model, typically based on graph neural networks (GNNs) applied to graph-based representations of the source code and pragmas. They then perform design space exploration (DSE) to explore the pragma design space, rank candidate designs using the model, and return the top designs. However, traditional DSE methods face challenges due to the highly nonlinear relationship between pragma settings and performance metrics, along with complex interactions between pragmas that affect performance in non-obvious ways. To address these challenges, we propose compareXplore, a novel approach that learns to compare hardware designs for effective HLS optimization. CompareXplore introduces a hybrid loss function that combines pairwise preference learning with pointwise performance prediction, enabling the model to capture both relative preferences and absolute performance. Moreover, we introduce a novel node difference attention module that focuses on the most informative differences between designs, enabling the model to identify critical pragmas impacting performance. CompareXplore adopts a two-stage DSE, where a pointwise prediction model is used for the initial design pruning, followed by a pairwise comparison stage for precise performance verification. In extensive experiments, compareXplore achieves significant improvements in ranking metrics and generates high-quality HLS results for the selected designs, outperforming the existing SOTA method.

cs.LG↗

arXiv2025

LIFT: LLM-Based Pragma Insertion for HLS via GNN Supervised Fine-Tuning

FPGAs are increasingly adopted in datacenter environments for their reconfigurability and energy efficiency. High-Level Synthesis (HLS) tools have eased FPGA programming by raising the abstraction level from RTL to untimed C/C++, yet attaining high performance still demands expert knowledge and iterative manual insertion of optimization pragmas to modify the microarchitecture. To address this challenge, we propose LIFT, a large language model (LLM)-based coding assistant for HLS that automatically generates performance-critical pragmas given a C/C++ design. We fine-tune the LLM by tightly integrating and supervising the training process with a graph neural network (GNN), combining the sequential modeling capabilities of LLMs with the structural and semantic understanding of GNNs necessary for reasoning over code and its control/data dependencies. On average, LIFT produces designs that improve performance by 3.52x and 2.16x than prior state-of the art AutoDSE and HARP respectively, and 66x than GPT-4o.

cs.LG↗

arXiv2025

Optimized Multi-Token Joint Decoding with Auxiliary Model for LLM Inference

Large language models (LLMs) have achieved remarkable success across diverse tasks, yet their inference processes are hindered by substantial time and energy demands due to single-token generation at each decoding step. While previous methods such as speculative decoding mitigate these inefficiencies by producing multiple tokens per step, each token is still generated by its single-token distribution, thereby enhancing speed without improving effectiveness. In contrast, our work simultaneously enhances inference speed and improves the output effectiveness. We consider multi-token joint decoding (MTJD), which generates multiple tokens from their joint distribution at each iteration, theoretically reducing perplexity and enhancing task performance. However, MTJD suffers from the high cost of sampling from the joint distribution of multiple tokens. Inspired by speculative decoding, we introduce multi-token assisted decoding (MTAD), a novel framework designed to accelerate MTJD. MTAD leverages a smaller auxiliary model to approximate the joint distribution of a larger model, incorporating a verification mechanism that not only ensures the accuracy of this approximation, but also improves the decoding efficiency over conventional speculative decoding. Theoretically, we demonstrate that MTAD closely approximates exact MTJD with bounded error. Empirical evaluations using Llama-2 and OPT models ranging from 13B to 70B parameters across various tasks reveal that MTAD reduces perplexity by 21.2% and improves downstream performance compared to standard single-token sampling. Furthermore, MTAD achieves a 1.42x speed-up and consumes 1.54x less energy than conventional speculative decoding methods. These results highlight MTAD's ability to make multi-token joint decoding both effective and efficient, promoting more sustainable and high-performance deployment of LLMs.

cs.CL↗

arXiv2025

A Social Dynamical System for Twitter Analysis

Understanding the evolution of public opinion is crucial for informed decision-making in various domains, particularly public affairs. The rapid growth of social networks, such as Twitter (now rebranded as X), provides an unprecedented opportunity to analyze public opinion at scale without relying on traditional surveys. With the rise of deep learning, Graph Neural Networks (GNNs) have shown great promise in modeling online opinion dynamics. Notably, classical opinion dynamics models, such as DeGroot, can be reformulated within a GNN framework. We introduce Latent Social Dynamical System (LSDS), a novel framework for modeling the latent dynamics of social media users' opinions based on textual content. Since expressed opinions may not fully reflect underlying beliefs, LSDS first encodes post content into latent representations. It then leverages a GraphODE framework, using a GNN-based ODE function to predict future opinions. A decoder subsequently utilizes these predicted latent opinions to perform downstream tasks, such as interaction prediction, which serve as benchmarks for model evaluation. Our framework is highly flexible, supporting various opinion dynamic models as ODE functions, provided they can be adapted into a GNN-based form. It also accommodates different encoder architectures and is compatible with diverse downstream tasks. To validate our approach, we constructed dynamic datasets from Twitter data. Experimental results demonstrate the effectiveness of LSDS, highlighting its potential for future applications. We plan to publicly release our dataset and code upon the publication of this paper.

cs.SI↗

arXiv2025

Dynamic-Width Speculative Beam Decoding for Efficient LLM Inference

Large language models (LLMs) have shown outstanding performance across numerous real-world tasks. However, the autoregressive nature of these models makes the inference process slow and costly. Speculative decoding has emerged as a promising solution, leveraging a smaller auxiliary model to draft future tokens, which are then validated simultaneously by the larger model, achieving a speed-up of 1-2x. Although speculative decoding matches the same distribution as multinomial sampling, multinomial sampling itself is prone to suboptimal outputs, whereas beam sampling is widely recognized for producing higher-quality results by maintaining multiple candidate sequences at each step. This paper explores the novel integration of speculative decoding with beam sampling. However, there are four key challenges: (1) how to generate multiple sequences from the larger model's distribution given drafts sequences from the small model; (2) how to dynamically optimize the number of beams to balance efficiency and accuracy; (3) how to efficiently verify the multiple drafts in parallel; and (4) how to address the extra memory costs inherent in beam sampling. To address these challenges, we propose dynamic-width speculative beam decoding (DSBD). Specifically, we first introduce a novel draft and verification scheme that generates multiple sequences following the large model's distribution based on beam sampling trajectories from the small model. Then, we introduce an adaptive mechanism to dynamically tune the number of beams based on the context, optimizing efficiency and effectiveness. Besides, we extend tree-based parallel verification to handle multiple trees simultaneously, accelerating the verification process. Finally, we illustrate a simple modification to our algorithm to mitigate the memory overhead of beam sampling...

cs.AI↗

arXiv2025

Hierarchical Mixture of Experts: Generalizable Learning for High-Level Synthesis

High-level synthesis (HLS) is a widely used tool in designing Field Programmable Gate Array (FPGA). HLS enables FPGA design with software programming languages by compiling the source code into an FPGA circuit. The source code includes a program (called "kernel") and several pragmas that instruct hardware synthesis, such as parallelization, pipeline, etc. While it is relatively easy for software developers to design the program, it heavily relies on hardware knowledge to design the pragmas, posing a big challenge for software developers. Recently, different machine learning algorithms, such as GNNs, have been proposed to automate the pragma design via performance prediction. However, when applying the trained model on new kernels, the significant domain shift often leads to unsatisfactory performance. We propose a more domain-generalizable model structure: a two-level hierarchical Mixture of Experts (MoE), that can be flexibly adapted to any GNN model. Different expert networks can learn to deal with different regions in the representation space, and they can utilize similar patterns between the old kernels and new kernels. In the low-level MoE, we apply MoE on three natural granularities of a program: node, basic block, and graph. The high-level MoE learns to aggregate the three granularities for the final decision. To train the hierarchical MoE stably, we further propose a two-stage training method to avoid expert polarization. Extensive experiments verify the effectiveness of the proposed hierarchical MoE. We publicized our codes at https://github.com/weikai-li/HierarchicalMoE.

cs.LG↗

arXiv2025

Protein Large Language Models: A Comprehensive Survey

Protein-specific large language models (Protein LLMs) are revolutionizing protein science by enabling more efficient protein structure prediction, function annotation, and design. While existing surveys focus on specific aspects or applications, this work provides the first comprehensive overview of Protein LLMs, covering their architectures, training datasets, evaluation metrics, and diverse applications. Through a systematic analysis of over 100 articles, we propose a structured taxonomy of state-of-the-art Protein LLMs, analyze how they leverage large-scale protein sequence data for improved accuracy, and explore their potential in advancing protein engineering and biomedical research. Additionally, we discuss key challenges and future directions, positioning Protein LLMs as essential tools for scientific discovery in protein science. Resources are maintained at https://github.com/Yijia-Xiao/Protein-LLM-Survey.

q-bio.BM↗

arXiv2025

Do Contemporary Causal Inference Models Capture Real-World Heterogeneity? Findings from a Large-Scale Benchmark

We present unexpected findings from a large-scale benchmark study evaluating Conditional Average Treatment Effect (CATE) estimation algorithms, i.e., CATE models. By running 16 modern CATE models on 12 datasets and 43,200 sampled variants generated through diverse observational sampling strategies, we find that: (a) 62\% of CATE estimates have a higher Mean Squared Error (MSE) than a trivial zero-effect predictor, rendering them ineffective; (b) in datasets with at least one useful CATE estimate, 80\% still have higher MSE than a constant-effect model; and (c) Orthogonality-based models outperform other models only 30\% of the time, despite widespread optimism about their performance. These findings highlight significant challenges in current CATE models and underscore the need for broader evaluation and methodological improvements. Our findings stem from a novel application of \textit{observational sampling}, originally developed to evaluate Average Treatment Effect (ATE) estimates from observational methods with experiment data. To adapt observational sampling for CATE evaluation, we introduce a statistical parameter, $Q$, equal to MSE minus a constant and preserves the ranking of models by their MSE. We then derive a family of sample statistics, collectively called $\hat{Q}$, that can be computed from real-world data. When used in observational sampling, $\hat{Q}$ is an unbiased estimator of $Q$ and asymptotically selects the model with the smallest MSE. To ensure the benchmark reflects real-world heterogeneity, we handpick datasets where outcomes come from field rather than simulation. By integrating observational sampling, new statistics, and real-world datasets, the benchmark provides new insights into CATE model performance and reveals gaps in capturing real-world heterogeneity, emphasizing the need for more robust benchmarks.

stat.ML↗

arXiv2025

HMT: Hierarchical Memory Transformer for Efficient Long Context Language Processing

Transformer-based large language models (LLM) have been widely used in language processing applications. However, due to the memory constraints of the devices, most of them restrict the context window. Even though recurrent models in previous works can memorize past tokens to enable unlimited context and maintain effectiveness, they have ``flat'' memory architectures. Such architectures have limitations in selecting and filtering information. Since humans are good at learning and self-adjustment, we believe that imitating brain memory hierarchy is beneficial for model memorization. Thus, we propose the Hierarchical Memory Transformer (HMT), a novel framework that facilitates a model's long-context processing ability by imitating human memorization behavior. Leveraging memory-augmented segment-level recurrence, we organize the memory hierarchy by preserving tokens from early input segments, passing memory embeddings along the sequence, and recalling relevant information from history. Evaluating general language modeling, question-answering tasks, and the summarization task, we show that HMT consistently improves the long-context processing ability of existing models. Furthermore, HMT achieves a comparable or superior generation quality to long-context LLMs with $2 \sim 57\times$ fewer parameters and $2.5 \sim 116\times$ less inference memory, significantly outperforming previous memory-augmented models. Code on Github: https://github.com/OswaldHe/HMT-pytorch.

cs.CL↗

arXiv2025

QLASS: Boosting Language Agent Inference via Q-Guided Stepwise Search

Language agents have become a promising solution to complex interactive tasks. One of the key ingredients to the success of language agents is the reward model on the trajectory of the agentic workflow, which provides valuable guidance during training or inference. However, due to the lack of annotations of intermediate interactions, most existing works use an outcome reward model to optimize policies across entire trajectories. This may lead to sub-optimal policies and hinder the overall performance. To address this, we propose QLASS (Q-guided Language Agent Stepwise Search), to automatically generate annotations by estimating Q-values in a stepwise manner for open language agents. By introducing a reasoning tree and performing process reward modeling, QLASS provides effective intermediate guidance for each step. With the stepwise guidance, we propose a Q-guided generation strategy to enable language agents to better adapt to long-term value, resulting in significant performance improvement during model inference on complex interactive agent tasks. Notably, even with almost half the annotated data, QLASS retains strong performance, demonstrating its efficiency in handling limited supervision. We also empirically demonstrate that QLASS can lead to more effective decision making through qualitative analysis. We will release our code and data.

cs.LG↗