arXiv subjects

Yonatan Kurniawan

Publications and source records attributed to Yonatan Kurniawan.

9 recordsLinked to original sources

arXiv2026

AutoREC: A reinforcement learning platform for equivalent circuit model generation

This paper introduces AutoREC, an open-source Python platform for developing, training, and evaluating reinforcement learning (RL) agents that automatically generate equivalent circuit models (ECMs) from electrochemical impedance spectroscopy (EIS) data. Although ECMs are widely used to interpret EIS measurements, their identification typically relies on manual trial-and-error, requiring domain expertise and limiting scalability, particularly in autonomous experimental pipelines such as self-driving laboratories. In AutoREC, ECM generation is formulated as a Markov decision process in which an RL agent sequentially modifies a circuit topology based on the current state, available actions, and feedback from the resulting model. The platform supports an end-to-end workflow encompassing EIS preprocessing with selectable impedance representations, agent setup and training, ECM generation for new measurements, and visualization-based evaluation and analysis of agent decision-making. AutoREC implements a configurable Double Deep Q-Network (DDQN) agent with prioritized experience replay and a dedicated dead-loop mitigation strategy for navigating the complex circuit-generation action space efficiently. To demonstrate the platform, we trained and evaluated a representative agent on synthetic EIS datasets and applied it to previously unseen experimental spectra from battery, corrosion, oxygen evolution reaction, and CO$_2$ reduction systems. These case studies illustrate the end-to-end capabilities of AutoREC while revealing challenges associated with experimental complexity and limited training-data coverage. The demonstrated agent serves as a reference implementation; AutoREC provides an extensible foundation through which users can develop and evaluate agents tailored to their specific electrochemical systems and research objectives.

cs.LG↗

arXiv2026

Comparative study of ensemble-based uncertainty quantification methods for neural network interatomic potentials

Machine learning interatomic potentials (MLIPs) enable atomistic simulations with near first-principles accuracy at substantially reduced computational cost, making them powerful tools for large-scale materials modeling. The accuracy of MLIPs is typically validated on a held-out dataset of \emph{ab initio} energies and atomic forces. However, accuracy on these small-scale properties does not guarantee reliability for emergent, system-level behavior -- precisely the regime where atomistic simulations are most needed, but for which direct validation is often computationally prohibitive. As a practical heuristic, predictive precision -- quantified as inverse uncertainty -- is commonly used as a proxy for accuracy, but its reliability remains poorly understood, particularly for system-level predictions. In this work, we systematically assess the relationship between predictive precision and accuracy in both in-distribution (ID) and out-of-distribution (OOD) regimes, focusing on ensemble-based uncertainty quantification methods for neural network potentials, including bootstrap, dropout, random initialization, and snapshot ensembles. We use held-out cross-validation for ID assessment and calculate cold curve energies and phonon dispersion relations for OOD testing. These evaluations are performed across various carbon allotropes as representative test systems. We find that uncertainty estimates can behave counterintuitively in OOD settings, often plateauing or even decreasing as predictive errors grow. These results highlight fundamental limitations of current uncertainty quantification approaches and underscore the need for caution when using predictive precision as a stand-in for accuracy in large-scale, extrapolative applications.

cond-mat.mtrl-sci↗

arXiv2026

Inverse design of bespoke interatomic potentials via active learning by information-matching

Interatomic potentials (IPs) enable large-scale atomistic simulations beyond the reach of first-principles methods, but their predictive reliability depends critically on the selection of training data, quantified uncertainty, and model expressiveness. Active learning (AL) provides a principled framework for constructing efficient and accurate IPs, yet most strategies reduce parameter uncertainty without explicitly accounting for the specific material properties being predicted. The information-matching (IM) approach addresses this limitation by requiring that the selected training data provide at least as much parameter space information as needed to achieve prescribed uncertainty targets for selected quantities of interest (QoIs). Here, we apply IM to develop bespoke IPs specifically tailored for predicting plastic strength in metals. Due to the high computational cost of simulating plastic strength, we employ an indirect IM strategy that targets inexpensive intermediate QoIs that correlate with strength. The IM method enables precise parameter constraints with minimal training data, yielding precise predictions for both the intermediate QoIs and plastic strength. Yet, model error remains a key limitation, and a post hoc uncertainty inflation correction provides a viable means to mitigate this limitation. These findings illustrate both the promise and limits of uncertainty-aware AL for predicting complex material properties.

cond-mat.mtrl-sci↗

arXiv2026

Accelerating Electrochemical Impedance Spectroscopy Measurements by Reducing Reliance on Noisy Low-Frequency Data

Electrochemical impedance spectroscopy (EIS) is a powerful tool for probing kinetic and transport processes in electrochemical systems, but its practical use is often limited by the long acquisition time and noise sensitivity of low-frequency measurements. Here, we present a statistical inference-assisted framework that reduces the reliance on low-frequency sampling by increasing the sampling density in cleaner high-frequency regions. Using AutoEIS and Bayesian inference, the augmented high-frequency data are fitted to selected equivalent circuit models (ECMs) to reconstruct the full impedance spectrum and quantify parameter uncertainty. To evaluate reconstruction performance, we introduce the critical frequency (fc), defined as the highest cutoff frequency at which the full EIS response can still be reliably recovered. The results show that additional high-frequency sampling can not only shift fc to higher values but also reduce the total measurement time. The specific improvement depends on the noise level of the EIS data, the number of added data points, and the ECM structure. Overall, this work provides a practical framework for designing fast and efficient EIS data acquisition and offers guidance for applying partial-frequency EIS reconstruction in real electrochemical characterization.

physics.data-an↗

arXiv2026

Building informative materials datasets beyond targeted objectives

Materials science data collection can be expensive, making the reuse and long-term utility of datasets critical important for future discovery campaigns. In practice, researchers prioritize a subset of properties due to research interests. However, ignoring a subset of outcomes in data collection campaigns potentially generate datasets poorly suited for future learning tasks. Here, we present a framework for dataset construction that maximizes informativeness for target properties of interest while preserving performance on untargeted ones. Our approach uses diversity-aware selection to ensure broad coverage of the materials space. In noisy experimental dataset construction, we find that without our diversity-aware framework, prediction performance on untargeted properties can degrade by up to 40% relative to random sampling, whereas applying our framework yields improvements of up to 10% . For targeted properties, performance can degrade with respect to random sampling by up to 12.5% without diversity, while our framework achieves gains of up to 25%. Incorporating diversity into dataset construction not only preserves informativeness for the targeted properties, but also improves materials coverage for potential future objectives. As a result, the constructed datasets remain broadly informative across considered and unconsidered outcomes, ensuring unbiased quality entries and mitigating cold-start limitations in subsequent modeling and discovery campaigns.

cond-mat.mtrl-sci↗

arXiv2026

An information-matching approach to optimal experimental design and active learning

The efficacy of mathematical models heavily depends on the quality of the training data, yet collecting sufficient data is often expensive and challenging. Many modeling applications require inferring parameters only as a means to predict other quantities of interest (QoI). Because models often contain many unidentifiable (sloppy) parameters, QoIs often depend on a relatively small number of parameter combinations. Therefore, we introduce an information-matching criterion based on the Fisher Information Matrix to select the most informative training data from a candidate pool. This method ensures that the selected data contain sufficient information to learn only those parameters that are needed to constrain downstream QoIs. It is formulated as a convex optimization problem, making it scalable to large models and datasets. We demonstrate the effectiveness of this approach across various modeling problems in diverse scientific fields, including power systems and underwater acoustics. Finally, we use information-matching as a query function within an Active Learning loop for material science applications. In all these applications, we find that a relatively small set of optimal training data can provide the necessary information for achieving precise predictions. These results are encouraging for diverse future applications, particularly active learning in large machine learning models.

cs.LG↗

arXiv2025

Embracing Uncertainty in "Small Data" Problems: Estimating Earthquakes from Historical Anecdotes

Seismic risk estimates will be vastly improved with an increased understanding of historical (and pre-historical) seismic events. However the only existing data for these events is anecdotal and sparse. To address this we developed a framework based on Bayesian inference to estimate the location and magnitude of pre-instrumental earthquakes. We present a careful analysis of results obtained from this procedure which justifies the sampling algorithm, its convergence to the resultant posterior distribution, and yields estimates on uncertainties in the relevant quantities. Using a priori estimates on the posterior and numerical approximations of the Hessian, we demonstrate that the 1852 Banda Sea earthquake and tsunami is indeed well-understood given certain explicit hypotheses. Using the same techniques we also find that the 1820 south Sulawesi event may best be explained by a dual fault rupture, best attributed to the Kalatoa fault potentially conjoining the Flores thrust and Walanae/Selayar fault.

stat.AP↗

arXiv2022

Extending OpenKIM with an Uncertainty Quantification Toolkit for Molecular Modeling

Atomistic simulations are an important tool in materials modeling. Interatomic potentials (IPs) are at the heart of such molecular models, and the accuracy of a model's predictions depends strongly on the choice of IP. Uncertainty quantification (UQ) is an emerging tool for assessing the reliability of atomistic simulations. The Open Knowledgebase of Interatomic Models (OpenKIM) is a cyberinfrastructure project whose goal is to collect and standardize the study of IPs to enable transparent, reproducible research. Part of the OpenKIM framework is the Python package, KIM-based Learning-Integrated Fitting Framework (KLIFF), that provides tools for fitting parameters in an IP to data. This paper introduces a UQ toolbox extension to KLIFF. We focus on two sources of uncertainty: variations in parameters and inadequacy of the functional form of the IP. Our implementation uses parallel-tempered Markov chain Monte Carlo (PTMCMC), adjusting the sampling temperature to estimate the uncertainty due to the functional form of the IP. We demonstrate on a Stillinger--Weber potential that makes predictions for the atomic energies and forces for silicon in a diamond configuration. Finally, we highlight some potential subtleties in applying and using these tools with recommendations for practitioners and IP developers.

physics.comp-ph↗

arXiv2022

Bayesian, frequentist, and information geometric approaches to parametric uncertainty quantification of classical empirical interatomic potentials

In this paper, we consider the problem of quantifying parametric uncertainty in classical empirical interatomic potentials (IPs) using both Bayesian (Markov Chain Monte Carlo) and frequentist (profile likelihood) methods. We interface these tools with the Open Knowledgebase of Interatomic Models and study three models based on the Lennard-Jones, Morse, and Stillinger--Weber potentials. We confirm that IPs are typically sloppy, i.e., insensitive to coordinated changes in some parameter combinations. Because the inverse problem in such models is ill-conditioned, parameters are unidentifiable. This presents challenges for traditional statistical methods, as we demonstrate and interpret within both Bayesian and frequentist frameworks. We use information geometry to illuminate the underlying cause of this phenomenon and show that IPs have global properties similar to those of sloppy models from fields such as systems biology, power systems, and critical phenomena. IPs correspond to bounded manifolds with a hierarchy of widths, leading to low effective dimensionality in the model. We show how information geometry can motivate new, natural parameterizations that improve the stability and interpretation of uncertainty quantification analysis and further suggest simplified, less-sloppy models.

cond-mat.mtrl-sci↗