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Yonatan L. Ashenafi

Publications and source records attributed to Yonatan L. Ashenafi.

2 recordsLinked to original sources

Variational Dimension Lifting for Robust Tracking of Nonlinear Stochastic Dynamics

Nonlinear stochastic motion presents significant challenges for Bayesian particle tracking. To address this challenge, we propose a lifting framework that constructs a higher-dimensional linear stochastic representation of nonlinear state-space models. The resulting surrogates enable the use of computationally efficient linear filtering techniques while retaining a direct connection to the underlying nonlinear dynamics. The paper derives the necessary conditions for such transformations using Ito's lemma and variational calculus, and illustrates the method on a bistable cubic motion model, radial Brownian process model, and a logistic model with multiplicative noise. Simulations confirm that the transformed linear systems, when projected back, accurately reconstruct the nonlinear dynamics and, in distinct regimes of stiffness and singularity, yield tracking accuracy competitive with conventional filters, while avoiding their structural instabilities.

stat.ME↗

Stochastic Analysis of Taxis and Kinesis Properties of Colonial Protozoa

Protozoan colonies undergo stimulus driven motion for purposes such as nutrient acquisition. Colonial response to a stimulus is mediated through a mechanical aggregation of the response properties of members of the colony. We develop and apply asymptotic analysis to a stochastic model for the integration of two classes of stimulus responses of the constituent cells -- taxis and kinesis. We investigate in particular the maintenance of effectiveness of taxis and kinesis in the transition from unicellular to multicellular organisms, using experimental observations of chemotaxis and aerotaxis of protozoa as a reference. Our taxis model based on a steering response of individual cells actually leads to a counterproductive drift of the colony down the stimulus gradient, together with a constructive drift up the gradient which is proportional to a measure of asymmetry of the flagellar placement. The strength of taxis drift up the stimulus gradient decreases with colony size while the counterproductive term does not, indicating a failure for colonial taxis based on a steering response of individual cells. Under a kinesis response of the cellular flagellar motion, enhancing the noise as the cell is facing away from the stimulus gradient, the colony does drift up the gradient with a speed independent of colony size, even under a completely symmetric placement of flagella.

q-bio.QM↗