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Yong Woon Kim

Publications and source records attributed to Yong Woon Kim.

18 recordsLinked to original sources

Active search for a reactive target in thermal environments

We study a stochastic process where an active particle, modeled by a one-dimensional run-and-tumble particle, searches for a target with a finite absorption strength in thermal environments. Solving the Fokker-Planck equation for a uniform initial distribution, we analytically calculate the mean searching time (MST), the time for the active particle to be finally absorbed, and show that there exists an optimal self-propulsion velocity of the active particle at which MST is minimized. As the diffusion constant increases, the optimal velocity changes from a finite value to zero, which implies that a purely diffusive Brownian motion outperforms an active motion in terms of searching time. Depending on the absorption strength of the target, the transition of the optimal velocity becomes either continuous or discontinuous, which can be understood based on the Landau approach. In addition, we obtain the phase diagram indicating the passive-efficient and the active-efficient regions. Finally, the initial condition dependence of MST is presented in limiting cases.

cond-mat.stat-mech

Searching for a partially absorbing target by a run-and-tumble particle in a confined space

A random search of a partially absorbing target by a run-and-tumble particle in a confined one-dimensional space is investigated. We analytically obtain the mean searching time, which shows a non-monotonic behavior as a function of the self-propulsion speed of the active particle, indicating the existence of an optimal speed, when the absorption strength of the target is finite. In the limit of large and small absorption strengths, respectively, asymptotes of the mean searching time and the optimal speed are found. We also demonstrate that the first-passage problem of a diffusive run-and-tumble particle in high dimensions can be mapped into a one-dimensional problem with a partially absorbing target. Finally, as a practical application exploiting the existence of the optimal speed, we propose a filtering device to extract active particles with a desired speed and evaluate how the resolution of the filtering device depends on the absorption strength.

cond-mat.stat-mech

Statistical inference as Green's functions

Statistical inference from data is a foundational task in science. Recently, it has received growing attention for its central role in inference systems of primary interest in data sciences and machine learning. However, the understanding of statistical inference is not that solid while remains as a matter of subjective belief or as the routine procedures once claimed objective. We here show that there is an objective description of statistical inference for long sequence of exchangeable binary random variables, the prototypal stochasticity in theories and applications. A linear differential equation is derived from the identity known as de Finetti's representation theorem, and it turns out that statistical inference is given by the Green's functions. Our finding is an answer to the normative issue of science that pursues the objectivity based on data, and its significance will be far-reaching in most pure and applied fields.

cond-mat.stat-mech

Target Searches of Interacting Brownian Particles

We study the target search of interacting Brownian particles in a finite domain, focusing on the effect of inter-particle interactions on the search time. We derive the integral equation for the mean first-passage time and acquire its solution as a series expansion in the orders of the Mayer function. For dilute systems relevant to most target search problems, we analytically obtain the leading order correction to the search time and prove a universal relation given by the particle density and the second virial coefficient. Finally, we validate our theoretical prediction by Langevin dynamics simulations for the various types of the interaction potential.

cond-mat.stat-mech

Optimal Searcher Distribution for Parallel Random Target Searches

We consider a problem of finding a target located in a finite $d$-dimensional domain, using $N$ independent random walkers, when partial information on the target location is given as a probability distribution. When $N$ is large, the first-passage time sensitively depends on the initial searcher distribution, which invokes the question of what is the optimal searcher distribution that minimizes the first-passage time. Here, we analytically derive the equation for the optimal distribution and explore its limiting expressions. If the target volume can be ignored, the optimal distribution is proportional to the target distribution to the power of one-third. If we consider a target of a finite volume and the probability of initial overlapping of searchers with the target cannot be ignored in the large $N$ limit, the optimal distribution has a weak dependence on the target distribution, given as a logarithm of the target distribution. Using Langevin dynamics simulations, we numerically demonstrate our predictions in one- and two-dimensions.

cond-mat.stat-mech

Measurement driven single temperature engine

A four stroke quantum engine which alternately interacts with a measurement apparatus and a single heat bath is discussed in detail with respect to the average work and heat as well as to the fluctuations of work and heat. The efficiency and the reliability of such an engine with a harmonic oscillator as working substance are analyzed under different conditions such as different speeds of the work strokes, different temperatures of the heat bath and various strengths of the energy supplying measurement. For imperfect thermalization strokes of finite duration also the power of the engine is analyzed. A comparison with a two-temperature Otto engine is provided in the particular case of adiabatic work and ideal thermalization strokes.

cond-mat.stat-mech

Public opinion by a poll process: model study and Bayesian view

We study the formation of public opinion in a poll process where the current score is open to public. The voters are assumed to vote probabilistically for or against their own preference considering the group opinion collected up to then in the score. The poll-score probability is found to follow the beta distribution in the large polls limit. We demonstrate that various poll results even contradictory to the population preference are possible with non-zero probability density and that such deviations are readily triggered by initial bias. It is mentioned that our poll model can be understood in the Bayesian viewpoint.

physics.soc-ph

Role of work in matter exchange between finite quantum systems

Close to equilibrium, the exchange of particles and heat between macroscopic systems at different temperatures and different chemical potentials is known to be governed by a matrix of transport coefficients which is positive and symmetric. We investigate the amounts of heat and particles that are exchanged between two small quantum systems within a given time, and find them characterized by a transport matrix which neither needs to be symmetric nor positive. At larger times even spontaneous transport can be observed in the total absence of temperature and chemical potential differences provided that the two systems are different in size. All these deviations from standard transport behavior can be attributed to the fact that work is done on the system in the processes contacting and separating those parts of the system that initially possess different temperatures and chemical potentials. The standard transport properties are recovered for vanishing work and also in the limit of large systems and sufficiently large contact times. The general results are illustrated by an example.

cond-mat.stat-mech

Single-Temperature Quantum Engine Without Feedback Control

A cyclically working quantum mechanical engine that operates at a single temperature is proposed. Its energy input is delivered by a quantum measurement. The functioning of the engine does not require any feedback control. We analyze work, heat, and the efficiency of the engine for the case of a working substance that is governed by the laws of quantum mechanics and that can be adiabatically compressed and dilated. The obtained general expressions are exemplified for a spin in an adiabatically changing magnetic field and a particle moving in a potential with slowly changing shape.

cond-mat.stat-mech

Chiral Separation by Flows: The Role of Flow Symmetry and Dimensionality

Separation of enantiomers by flows is a promising chiral resolution method using cost-effective microfluidics. Notwithstanding a number of experimental and numerical studies, a fundamental understanding still remains elusive, and an important question as to whether it is possible to specify common physical properties of flows that induce separation has not been addressed. Here, we study the separation of rigid chiral objects of an arbitrary shape induced by a linear flow field at low Reynolds numbers. Based on a symmetry property under parity inversion, we show that the rate-of-strain field is essential to drift the objects in opposite directions according to chirality. From eigenmode analysis, we also derive an analytic expression for the separation conditions which shows that the flow field should be quasi-two-dimensional for the precise and efficient resolutions of microscopic enantiomers. We demonstrate this prediction by Langevin dynamics simulations with hydrodynamic interactions fully implemented. Finally, we discuss the practical feasibility of the linear flow analysis, considering separations by a vortex flow or an extensional flow under a confining potential.

cond-mat.soft

Transitional steady states of exchange dynamics between finite quantum systems

We examine energy and particle exchange between finite-sized quantum systems and find a new form of nonequilibrium states. The exchange rate undergoes stepwise evolution in time, and its magnitude and sign dramatically change according to system size differences. The origin lies in interference effects contributed by multiply scattered waves at system boundaries. Although such characteristics are utterly different from those of true steady state for infinite systems, Onsager's reciprocal relation remains universally valid.

cond-mat.stat-mech

Hidden Criticality of Counterion Condensation Near a Charged Cylinder

We study the condensation transition of counterions on a charged cylinder via Monte Carlo simulations. Varying the cylinder radius systematically in relation to the system size, we find that all counterions are bound to the cylinder and the heat capacity shows a drop at a finite Manning parameter. A finite-size scaling analysis is carried out to confirm the criticality of the complete condensation transition, yielding the same critical exponents with the Manning transition. We show that the existence of the complete condensation is essential to explain how the condensation nature alters from continuous to discontinuous transition.

cond-mat.stat-mech

Analysis of diffusion trajectories of anisotropic objects

We theoretically analyze diffusion trajectories of an anisotropic object moving on a two dimensional space in the absence of an external field. In determining diffusion parameters associated with the shape anisotropy, we devise a measure based on the gyration tensor, and obtain its analytic expression exactly. Its efficiency and statistical convergence are examined in comparison with the fourth cumulant of particle displacement. We find that the estimation of diffusion constants based on the gyration measure is more efficient than analysis adopting the fourth cumulant.

cond-mat.stat-mech

Nonequilibrium work and entropy production by quantum projective measurements

We study the thermodynamics of quantum projective measurements by using the set up for the Jarzynski equality. We prove the fluctuations of energy change induced by measurements satisfy the Jarzynski equality, revealing that the quantum projective measurements perform a work on a measured system. When the system is brought into a thermal contact with a reservoir after measurements, the work done by projective measurements is totally dissipated in the form of heat from the system into the reservoir. Explicitly showing that the measurements always increase the total entropy, we prove the link between the second law of thermodynamics and the quantum measurement, and also provide a clue to the Landau-Lifshitz conjecture on the thermodynamic consequence of measurements.

cond-mat.stat-mech

Fluctuations of red blood cell membranes: The role of cytoskeleton

We theoretically investigate the membrane fluctuations of red blood cells with focus laid on the role of the cytoskeleton, viewing the system as a membrane coupled to sparse spring network. This model is exactly solvable and enables us to examine the coupling strength dependence of the membrane undulation. We find that the coupling modifies the fluctuation spectrum at wavelengths longer than the mesh size of the network, while leaving the fluid-like behavior of the membrane intact at shorter wavelengths. The fluctuation spectra can be markedly different, depending on not only the relative amplitude of the bilayer bending energy with respect to the cytoskeleton deformation energy but also the bilayer-cytoskelton coupling strength.

cond-mat.soft

Comparison of free energy estimators and their dependence on dissipated work

The estimate of free energy changes based on Bennett's acceptance ratio method is examined in several limiting cases and compared with other estimates based on the Jarzynski equality and on the Crooks relation. While the absolute amount of dissipated work, defined as the surplus of average work over the free energy difference, limits the practical applicability of Jarzynski's and Crooks' methods, the reliability of Bennett's approach is restricted by the difference of the dissipated works in the forward and the backward process. We illustrate these points by considering a Gaussian chain and a hairpin chain which both are extended during the forward and accordingly compressed during the backward protocol. The reliability of the Crooks relation predominantly depends on the sample size; for the Jarzynski estimator the slowness of the work protocol is crucial, and the Bennett method is shown to give precise estimates irrespective of the pulling speed and sample size as long as the dissipated works are the same for the forward and the backward process as it is the case for Gaussian work distributions. With an increasing dissipated work difference the Bennett estimator also acquires a bias which increases roughly in proportion to this difference. A substantial simplification of the Bennett estimator is provided by the 1/2-formula which expresses the free energy difference by the algebraic average of the Jarzynski estimates for the forward and the backward processes. It agrees with the Bennett estimate in all cases when the Jarzynski and the Crooks estimates fail to give reliable results.

cond-mat.stat-mech

Work fluctuations for Bose particles in grand canonical initial states

We consider bosons in a harmonic trap and investigate the fluctuations of the work performed by an adiabatic change of the trap curvature. Depending on the reservoir conditions such as temperature and chemical potential that provide the initial equilibrium state, the exponentiated work average (EWA) defined in the context of the Crooks relation and the Jarzynski equality may diverge if the trap becomes wider. We investigate how the probability distribution function (PDF) of the work signals this divergence. It is shown that at low temperatures the PDF is highly asymmetric with a steep fall off at one side and an exponential tail at the other side. For high temperatures it is closer to a symmetric distribution approaching a Gaussian form. These properties of the work PDF are discussed in relation to the convergence of the EWA and to the existence of the hypothetical equilibrium state to which those thermodynamic potential changes refer that enter both the Crooks relation and the Jarzynski equality.

cond-mat.stat-mech

Polymer Translocation in Crowded Environments

We study the effect of the crowded nature of the cellular cytoplasm on the translocation of a polymer through a pore in a membrane. By systematically treating the entropic penalty due to crowding, we show that the translocation dynamics are significantly altered, leading to novel scaling behaviors of the translocation time in terms of chain length. We also observe new and qualitatively different translocation regimes depending upon the extent of crowding, transmembrane chemical potential asymmetry, and polymer length.

cond-mat.soft