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Yongda Zhu

Publications and source records attributed to Yongda Zhu.

At least 109 records · Page 6Linked to original sources

Multi-phase black-hole feedback and a bright [CII] halo in a Lo-BAL quasar at $z\sim6.6$

Although the mass growth of supermassive black holes during the Epoch of Reionisation is expected to play a role in shaping the concurrent growth of their host-galaxies, observational evidence of feedback at z$\gtrsim$6 is still sparse. We perform the first multi-scale and multi-phase characterisation of black-hole driven outflows in the $z\sim6.6$ quasar J0923+0402 and assess how these winds impact the cold gas reservoir. We employ the SimBAL spectral synthesis to fit broad absorption line (BAL) features and find a powerful ionized outflow on $\lesssim210$ pc scale, with a kinetic power $\sim2-100$\% of the quasar luminosity. ALMA observations of [CII] emission allow us to study the morphology and kinematics of the cold gas. We detect high-velocity [CII] emission, likely associated with a cold neutral outflow at $\sim0.5-2$ kpc scale in the host-galaxy, and a bright extended [CII] halo with a size of $\sim15$ kpc. For the first time at such an early epoch, we accurately constrain the outflow energetics in both the ionized and the atomic neutral gas phases. We find such energetics to be consistent with expectations for an efficient feedback mechanism, and both ejective and preventative feedback modes are likely at play. The scales and energetics of the ionized and atomic outflows suggest that they might be associated with different quasar accretion episodes. The results of this work indicate that strong black hole feedback is occurring in quasars at $z\gtrsim6$ and is likely responsible for shaping the properties of the cold gas reservoir up to circum-galactic scales.

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Damping wing absorption associated with a giant Ly$α$ trough at $z < 6$: direct evidence for late-ending reionization

Multiple observations now suggest that the hydrogen reionization may have ended well below redshift six. While there has previously been no conclusive proof of extended neutral islands in the $z < 6$ intergalactic medium, it is possible that such islands give rise to the giant Ly$α$ absorption troughs seen in the spectra of high-redshift quasars. Here we present evidence that the deepest and longest-known Ly$α$ trough at $z < 6$, towards ULAS J0148+0600 (J0148), is associated with damping wing absorption. The evidence comes from a window of strong Ly$α$ transmission at the edge of the J0148 proximity zone. We show that the relatively smooth profile of this transmission window is highly unlikely to arise from resonant absorption alone, but is consistent with the presence of a damping wing. We further argue that the damping wing is unlikely to arise from a compact source due to the lack of associated metal lines, and is more likely to arise from an extended neutral island associated with the giant Ly$α$ trough. We investigate the physical conditions that may give rise to the strong transmission window, and speculate that it may signal an usually deep void, nearby ionizing sources, and/or the recent passage of an ionization front.

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The effect of reionization on direct measurements of the mean free path

Recent measurements of the ionizing photon mean free path (MFP) based on composite quasar spectra may point to reionization ending at $z<6$. These measurements are challenging because they rely on assumptions about the proximity zones of the quasars. For example, some quasars might have been close to neutral patches where reionization was still ongoing ("neutral islands"), and it is unclear how they would affect the measurements. We address this question with mock MFP measurements from radiative transfer simulations. We find that, even in the presence of neutral islands, our mock MFP measurements agree to within $30~\%$ with the true spatially averaged MFP in our simulations, which includes opacity from both the ionized medium and the islands. The inferred MFP is sensitive at the $<~50\%$ level to assumptions about quasar environments and lifetimes for realistic models. We demonstrate that future analyses with improved data may require explicitly modeling the effects of neutral islands on the composite spectra, and we outline a method for doing this. Lastly, we quantify the effects of neutral islands on Lyman-series transmission, which has been modeled with optically thin simulations in previous MFP analyses. Neutral islands can suppress transmission at $λ_{\rm rest}<912$ Angstroms significantly, up to a factor of 2 for $z_{\rm qso}=6$ in a plausible reionization scenario, owing to absorption by many closely spaced lines as quasar light redshifts into resonance. However, the suppression is almost entirely degenerate with the spectrum normalization and thus does not significantly bias the inferred MFP.

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IGM damping wing constraints on the tail end of reionisation from the enlarged XQR-30 sample

The attenuation of Ly$α$ photons by neutral hydrogen in the intergalactic medium (IGM) at $z\gtrsim5$ continues to be a powerful probe for studying the epoch of reionisation. Given a framework to estimate the intrinsic (true) Ly$α$ emission of high-$z$ sources, one can infer the ionisation state of the IGM during reionisation. In this work, we use the enlarged XQR-30 sample of 42 high-resolution and high-SNR QSO spectra between $5.8\lesssim\,z\lesssim\,6.6$ obtained with VLT/X-Shooter to place constraints on the IGM neutral fraction. This is achieved using our existing Bayesian QSO reconstruction framework which accounts for uncertainties such as the: (i) posterior distribution of predicted intrinsic Ly$α$ emission profiles (obtained via covariance matrix reconstruction of the Ly$α$ and N V emission lines from unattenuated high-ionisation emission line profiles; C IV, Si IV + O IV] and C III]) and (ii) distribution of ionised regions within the IGM using synthetic damping wing profiles drawn from a $1.6^3$ Gpc$^3$ reionisation simulation. Following careful quality control, we used 23 of the 42 available QSOs to obtain constraints/limits on the IGM neutral fraction during the tail-end of reionisation. Our median and 68th percentile constraints on the IGM neutral fraction are: $0.20\substack{+0.14\\-0.12}$ and $0.29\substack{+0.14\\-0.13}$ at $z = 6.15$~and 6.35. Further, we also report 68th percentile upper-limits of $\bar{x}_{\mathrm{H\,{\scriptscriptstyle I}}} < 0.21$, 0.20, 0.21 and 0.18 at $z = 5.8, 5.95, 6.05$~and 6.55. These results imply reionisation is still ongoing at $5.8\lesssim\,z\lesssim\,6.55$, consistent with previous results from XQR-30 (dark fraction and Ly$α$ forest) along with other observational probes considered in the literature.

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JADES Data Release 3 -- NIRSpec/MSA spectroscopy for 4,000 galaxies in the GOODS fields

We present the third data release of JADES, the JWST Advanced Deep Extragalactic Survey, providing both imaging and spectroscopy in the two GOODS fields. Spectroscopy consists of medium-depth and deep NIRSpec/MSA spectra of 4,000 targets, covering the spectral range 0.6-5.3 $μ$m and observed with both the low-dispersion prism (R=30-300) and all three medium-resolution gratings (R=500-1,500). We describe the observations, data reduction, sample selection, and target allocation. We measured 2,375 redshifts (2,053 from multiple emission lines); our targets span the range from z=0.5 up to z=13, including 404 at z>5. The data release includes 2-d and 1-d fully reduced spectra, with slit-loss corrections and background subtraction optimized for point sources. We also provide redshifts and S/N>5 emission-line flux catalogs for the prism and grating spectra, and concise guidelines on how to use these data products. Alongside spectroscopy, we are also publishing fully calibrated NIRCam imaging, which enables studying the JADES sample with the combined power of imaging and spectroscopy. Together, these data provide the largest statistical sample to date to characterize the properties of galaxy populations in the first billion years after the Big Bang.

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Constraints on the Evolution of the Ionizing Background and Ionizing Photon Mean Free Path at the End of Reionization

The variations in Ly$α$ forest opacity observed at $z>5.3$ between lines of sight to different background quasars are too strong to be caused by fluctuations in the density field alone. The leading hypothesis for the cause of this excess variance is a late, ongoing reionization process at redshifts below six. Another model proposes strong ionizing background fluctuations coupled to a short, spatially varying mean free path of ionizing photons, without explicitly invoking incomplete reionization. With recent observations suggesting a short mean free path at $z\sim6$, and a dramatic improvement in $z>5$ Ly$α$ forest data quality, we revisit this latter possibility. Here we apply the likelihood-free inference technique of approximate Bayesian computation to jointly constrain the hydrogen photoionization rate $Γ_{\rm HI}$ and the mean free path of ionizing photons $λ_{\rm mfp}$ from the effective optical depth distributions at $z=5.0$-$6.1$ from XQR-30. We find that the observations are well-described by fluctuating mean free path models with average mean free paths that are consistent with the steep trend implied by independent measurements at $z\sim5$-$6$, with a concomitant rapid evolution of the photoionization rate.

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Measurements of the $z > 5$ Lyman-$α$ forest flux auto-correlation functions from the extended XQR-30 data set

Recently, the Lyman-$α$ (Ly$α$) forest flux auto-correlation function has been shown to be sensitive to the mean free path of hydrogen-ionizing photons, $λ_{\text{mfp}}$, for simulations at $z \geq 5.4$. Measuring $λ_{\text{mfp}}$ at these redshifts will give vital information on the ending of reionization. Here we present the first observational measurements of the Ly$α$ forest flux auto-correlation functions in ten redshift bins from $5.1 \leq z \leq 6.0$. We use a sample of 35 quasar sightlines at $z > 5.7$ from the extended XQR-30 data set, this data has signal-to-noise ratios of $> 20$ per spectral pixel. We carefully account for systematic errors in continuum reconstruction, instrumentation, and contamination by damped Ly$α$ systems. With these measurements, we introduce software tools to generate auto-correlation function measurements from any simulation. For an initial comparison, we show our auto-correlation measurements with simulation models for recently measured $λ_{\text{mfp}}$ values and find good agreements. Further work in modeling and understanding the covariance matrices of the data is necessary to get robust measurements of $λ_{\text{mfp}}$ from this data.

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The relationship between IGM Lyman-alpha opacity and galaxy density near the end of reionization

Observed scatter in the Lyman-alpha opacity of quasar sightlines at $z<6$ has motivated measurements of the correlation between Ly$α$ opacity and galaxy density, as models that predict this scatter make strong and sometimes opposite predictions for how they should be related. Our previous work associated two highly opaque Ly$α$ troughs at $z\sim5.7$ with a deficit of Lyman-$α$ emitting galaxies (LAEs). In this work, we survey two of the most highly transmissive lines of sight at this redshift, towards the $z=6.02$ quasar SDSS J1306+0356 and the $z=6.17$ quasar PSO J359-06. We find that both fields are underdense in LAEs within 10 $h^{-1}$ Mpc of the quasar sightline, somewhat less extensive than underdensities associated with Ly$α$ troughs. We combine our observations with three additional fields from the literature, and find that while fields with extreme opacities are generally underdense, moderate opacities span a wider density range. The results at high opacities are consistent with models that invoke UV background fluctuations and/or late reionization to explain the observed scatter in IGM Ly$α$ opacities. There is tension at low opacities, however, as the models tend to associate lower IGM Ly$α$ opacities with higher densities. Although the number of fields surveyed is still small, the low-opacity results may support a scenario in which the ionizing background in low-density regions increases more rapidly than some models suggest after becoming ionized. Elevated gas temperatures from recent reionization may also be making these regions more transparent.

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Measuring the photo-ionization rate, neutral fraction and mean free path of HI ionizing photons at $4.9 \leq z \leq 6.0$ from a large sample of XShooter and ESI spectra

We measure the mean free path ($λ_{\rm mfp,HI}$), photo-ionization rate ($\langle Γ_{\rm HI} \rangle$) and neutral fraction ($\langle f_{\rm HI} \rangle$) of hydrogen in 12 redshift bins at $4.85<z<6.05$ from a large sample of moderate resolution XShooter and ESI QSO absorption spectra. The fluctuations in ionizing radiation field are modeled by post-processing simulations from the Sherwood suite using our new code "EXtended reionization based on the Code for Ionization and Temperature Evolution" (EX-CITE). EX-CITE uses efficient Octree summation for computing intergalactic medium attenuation and can generate large number of high resolution $Γ_{\rm HI}$ fluctuation models. Our simulation with EX-CITE shows remarkable agreement with simulations performed with the radiative transfer code Aton and can recover the simulated parameters within $1σ$ uncertainty. We measure the three parameters by forward-modeling the Ly$α$ forest and comparing the effective optical depth ($τ_{\rm eff, HI}$) distribution in simulations and observations. The final uncertainties in our measured parameters account for the uncertainties due to thermal parameters, modeling parameters, observational systematics and cosmic variance. Our best fit parameters show significant evolution with redshift such that $λ_{\rm mfp,HI}$ and $\langle f_{\rm HI} \rangle$ decreases and increases by a factor $\sim 6$ and $\sim 10^{4}$, respectively from $z \sim 5$ to $z \sim 6$. By comparing our $λ_{\rm mfp,HI}$, $\langle Γ_{\rm HI} \rangle$ and $\langle f_{\rm HI} \rangle$ evolution with that in state-of-the-art Aton radiative transfer simulations and the Thesan and CoDa-III simulations, we find that our best fit parameter evolution is consistent with a model in which reionization completes by $z \sim 5.2$.

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Probing Ultra-late Reionization: Direct Measurements of the Mean Free Path over $5<z<6$

The mean free path of ionizing photons, $λ_{\rm mfp}$, is a critical parameter for modeling the intergalactic medium (IGM) both during and after reionization. We present direct measurements of $λ_{\rm mfp}$ from QSO spectra over the redshift range $5<z<6$, including the first measurements at $z\simeq5.3$ and 5.6. Our sample includes data from the XQR-30 VLT large program, as well as new Keck/ESI observations of QSOs near $z \sim 5.5$, for which we also acquire new [C II] 158$μ$m redshifts with ALMA. By measuring the Lyman continuum transmission profile in stacked QSO spectra, we find $λ_{\rm mfp} = 9.33_{-1.80}^{+2.06}$, $5.40_{-1.40}^{+1.47}$, $3.31_{-1.34}^{+2.74}$, and $0.81_{-0.48}^{+0.73}$ pMpc at $z=5.08$, 5.31, 5.65, and 5.93, respectively. Our results demonstrate that $λ_{\rm mfp}$ increases steadily and rapidly with time over $5<z<6$. Notably, we find that $λ_{\rm mfp}$ deviates significantly from predictions based on a fully ionized and relaxed IGM as late as $z=5.3$. By comparing our results to model predictions and indirect $λ_{\rm mfp}$ constraints based on IGM Ly$α$ opacity, we find that the $λ_{\rm mfp}$ evolution is consistent with scenarios wherein the IGM is still undergoing reionization and/or retains large fluctuations in the ionizing UV background well below redshift six.

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The fraction and kinematics of broad absorption line quasars across cosmic time

Luminous quasars are powerful targets to investigate the role of feedback from supermassive black-holes (BHs) in regulating the growth phases of BHs themselves and of their host galaxies, up to the highest redshifts. Here we investigate the cosmic evolution of the occurrence and kinematics of BH-driven outflows, as traced by broad absorption line (BAL) features, due to the C IV ionic transition. We exploit a sample of 1935 quasars quasars at $z=2.1-6.6$ with bolometric luminosity log($L_{\rm bol}/$erg s$^{-1})\gtrsim46.5$, drawn from the Sloan Digital Sky Survey and from the X-shooter legacy survey of Quasars at Reionisation (XQR-30). We consider rest-frame optical bright quasars to minimise observational biases due to quasar selection criteria. We apply a homogeneous BAL identification analysis, based on employing composite template spectra to estimate the quasar intrinsic emission. We find a BAL quasar fraction close to 20\% at $z\sim2-4$, while it increases to almost 50\% at $z\sim6$. The velocity and width of the BAL features also increase at $z\gtrsim4.5$. We exclude that the redshift evolution of the BAL properties is due to differences in terms of quasar luminosity and accretion rate. These results suggest significant BH feedback occurring in the 1 Gyr old Universe, likely affecting the growth of BHs and, possibly, of their host galaxies, as supported by models of early BH and galaxy evolution.

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Examining the Decline in the C IV Content of the Universe over 4.3 < z < 6.3 using the E-XQR-30 Sample

Intervening CIV absorbers are key tracers of metal-enriched gas in galaxy halos over cosmic time. Previous studies suggest that the CIV cosmic mass density ($Ω_{\rm CIV}$) decreases slowly over 1.5 $\lesssim z\lesssim$ 5 before declining rapidly at $z\gtrsim$ 5, but the cause of this downturn is poorly understood. We characterize the $Ω_{\rm CIV}$ evolution over 4.3 $\lesssim z\lesssim$ 6.3 using 260 absorbers found in 42 XSHOOTER spectra of $z\sim$ 6 quasars, of which 30 come from the ESO Large Program XQR-30. The large sample enables us to robustly constrain the rate and timing of the downturn. We find that $Ω_{\rm CIV}$ decreases by a factor of 4.8 $\pm$ 2.0 over the ~300 Myr interval between $z\sim$ 4.7 and $z\sim$ 5.8. The slope of the column density (log N) distribution function does not change, suggesting that CIV absorption is suppressed approximately uniformly across 13.2 $\leq$ log N/cm$^{-2}$ < 15.0. Assuming that the carbon content of galaxy halos evolves as the integral of the cosmic star formation rate density (with some delay due to stellar lifetimes and outflow travel times), we show that chemical evolution alone could plausibly explain the fast decline in $Ω_{\rm CIV}$ over 4.3 $\lesssim z\lesssim$ 6.3. However, the CIV/CII ratio decreases at the highest redshifts, so the accelerated decline in $Ω_{\rm CIV}$ at $z\gtrsim$ 5 may be more naturally explained by rapid changes in the gas ionization state driven by evolution of the UV background towards the end of hydrogen reionization.

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The XQR-30 Metal Absorber Catalog: 778 Absorption Systems Spanning 2 < z < 6.5

Intervening metal absorption lines in the spectra of z > 6 quasars are fundamental probes of the ionization state and chemical composition of circumgalactic and intergalactic gas near the end of the reionization epoch. Large absorber samples are required to robustly measure typical absorber properties and to refine models of the synthesis, transport, and ionization of metals in the early Universe. The "Ultimate XSHOOTER legacy survey of quasars at z~5.8-6.6" (XQR-30) has obtained high signal-to-noise spectra of 30 luminous quasars, nearly quadrupling the existing sample of 12 high quality z~6 quasar spectra. We use this unprecedented sample to construct a catalog of 778 systems showing absorption in one or more of MgII (360 systems), FeII (184), CII (46), CIV (479), SiIV (127), and NV (13) which span 2 < z < 6.5. This catalog significantly expands on existing samples of z > 5 absorbers, especially for CIV and SiIV which are important probes of the ionizing photon background at high redshift. The sample is 50% (90%) complete for rest-frame equivalent widths W > 0.03AA (0.09AA). We publicly release the absorber catalog along with completeness statistics and a Python script to compute the absorption search path for different ions and redshift ranges. This dataset is a key legacy resource for studies of enriched gas from the era of galaxy assembly to cosmic noon, and paves the way for even higher redshift studies with the James Webb Space Telescope and 30m-class telescopes.

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How Close Dark Matter Halos and MOND Are to Each Other: Three-Dimensional Tests Based on Gaia DR2

Aiming at discriminating different gravitational potential models of the Milky Way, we perform tests based on the kinematic data powered by the Gaia DR2 astrometry, over a large range of $(R,z)$ locations. Invoking the complete form of Jeans equations that admit three integrals of motion, we use the independent $R$- and $z$-directional equations as two discriminators ($T_R$ and $T_z$). We apply the formula for spatial distributions of radial and vertical velocity dispersions proposed by Binney et al., and successfully extend it to azimuthal components, $σ_θ(R,z)$ and $V_θ(R,z)$; the analytic form avoids the numerical artifacts caused by numerical differentiation in Jeans-equations calculation given the limited spatial resolutions of observations, and more importantly reduces the impact of kinematic substructures in the Galactic disk. It turns out that whereas the current kinematic data are able to reject Moffat's Modified Gravity (let alone the Newtonian baryon-only model), Milgrom's MOND is still not rejected. In fact, both the carefully calibrated fiducial model invoking a spherical dark matter (DM) halo and MOND are equally consistent with the data at almost all spatial locations (except that probably both have respective problems at low-$|z|$ locations), no matter which a tracer population or which a meaningful density profile is used. Because there is no free parameter at all in the quasi-linear MOND model we use, and the baryonic parameters are actually fine-tuned in the DM context, such an effective equivalence is surprising, and might be calling forth a transcending synthesis of the two paradigms.

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Long Dark Gaps in the Ly$β$ Forest at $z<6$: Evidence of Ultra Late Reionization from XQR-30 Spectra

We present a new investigation of the intergalactic medium (IGM) near reionization using dark gaps in the Lyman-$β$ (Ly$β$) forest. With its lower optical depth, Ly$β$ offers a potentially more sensitive probe to any remaining neutral gas compared to commonly used Ly$α$ line. We identify dark gaps in the Ly$β$ forest using spectra of 42 QSOs at $z_{\rm em}>5.5$, including new data from the XQR-30 VLT Large Programme. Approximately $40\%$ of these QSO spectra exhibit dark gaps longer than $10h^{-1}{\rm Mpc}$ at $z\simeq5.8$. By comparing the results to predictions from simulations, we find that the data are broadly consistent both with models where fluctuations in the Ly$α$ forest are caused solely by ionizing ultraviolet background (UVB) fluctuations and with models that include large neutral hydrogen patches at $z<6$ due to a late end to reionization. Of particular interest is a very long ($L=28h^{-1}{\rm Mpc}$) and dark ($τ_{\rm eff} \gtrsim 6$) gap persisting down to $z\simeq 5.5$ in the Ly$β$ forest of the $z_{\rm}=5.85$ QSO PSO J025$-$11. This gap may support late reionization models with a volume-weighted average neutral hydrogen fraction of $ \langle x_{\rm HI}\rangle \gtrsim 5\%$ by $z=5.6$. Finally, we infer constraints on $\langle x_{\rm HI}\rangle$ over $5.5 \lesssim z \lesssim 6.0$ based on the observed Ly$β$ dark gap length distribution and a conservative relationship between gap length and neutral fraction derived from simulations. We find $\langle x_{\rm HI}\rangle \leq 0.05$, 0.17, and 0.29 at $z\simeq 5.55$, 5.75, and 5.95, respectively. These constraints are consistent with models where reionization ends significantly later than $z = 6$.

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Hydrogen reionisation ends by $z=5.3$: Lyman-$α$ optical depth measured by the XQR-30 sample

The presence of excess scatter in the Ly-$α$ forest at $z\sim 5.5$, together with the existence of sporadic extended opaque Gunn-Peterson troughs, has started to provide robust evidence for a late end of hydrogen reionisation. However, low data quality and systematic uncertainties complicate the use of Ly-$α$ transmission as a precision probe of reionisation's end stages. In this paper, we assemble a sample of 67 quasar sightlines at $z>5.5$ with high signal-to-noise ratios of $>10$ per $\leq 15$ km s$^{-1}$ spectral pixel, relying largely on the new XQR-30 quasar sample. XQR-30 is a large program on VLT/X-Shooter which obtained deep (SNR $>20$ per pixel) spectra of 30 quasars at $z>5.7$. We carefully account for systematics in continuum reconstruction, instrumentation, and contamination by damped Ly-$α$ systems. We present improved measurements of the mean Ly-$α$ transmission over $4.9 3.5 σ$). Our results indicate that reionisation-related fluctuations, whether in the UVB, residual neutral hydrogen fraction, and/or IGM temperature, persist in the intergalactic medium until at least $z=5.3$ ($t=1.1$ Gyr after the Big Bang). This is further evidence for a late end to reionisation.

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Chemical Abundance of z~6 Quasar Broad-Line Regions in the XQR-30 Sample

The elemental abundances in the broad-line regions of high-redshift quasars trace the chemical evolution in the nuclear regions of massive galaxies in the early universe. In this work, we study metallicity-sensitive broad emission-line flux ratios in rest-frame UV spectra of 25 high-redshift (5.8 < z < 7.5) quasars observed with the VLT/X-shooter and Gemini/GNIRS instruments, ranging over $\log(M_{\rm{BH}}/M_{\odot})= 8.4-9.8$ in black hole mass and $\log(L_{\rm{bol}}/\rm{erg\, s}^{-1})= 46.7-47.7$ in bolometric luminosity. We fit individual spectra and composites generated by binning across quasar properties: bolometric luminosity, black hole mass, and blueshift of the \civ\, line, finding no redshift evolution in the emission-line ratios by comparing our high-redshift quasars to lower-redshift (2.0 < z < 5.0) results presented in the literature. Using Cloudy-based locally optimally-emitting cloud photoionisation model relations between metallicity and emission-line flux ratios, we find the observable properties of the broad emission lines to be consistent with emission from gas clouds with metallicity that are at least 2-4 times solar. Our high-redshift measurements also confirm that the blueshift of the CIV emission line is correlated with its equivalent width, which influences line ratios normalised against CIV. When accounting for the CIV blueshift, we find that the rest-frame UV emission-line flux ratios do not correlate appreciably with the black hole mass or bolometric luminosity.

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Constraints on the End of Reionization from the Density Fields Surrounding Two Highly Opaque Quasar Sightlines

The observed large-scale scatter in Lyman $α$ opacity of the intergalactic medium at $z<6$ implies large fluctuations in the neutral hydrogen fraction that are unexpected long after reionization has ended. A number of models have emerged to explain these fluctuations that make testable predictions for the relationship between Ly$α$ opacity and density. We present selections of $z=5.7$ Ly$α$-emitting galaxies (LAEs) in the fields surrounding two highly opaque quasar sightlines with long Ly$α$ troughs. The fields lie towards the $z=6.0$ quasar ULAS J0148+0600, for which we re-analyze previously published results using improved photometric selection, and towards the $z=6.15$ quasar SDSS J1250+3130, for which results are presented here for the first time. In both fields, we report a deficit of LAEs within 20 $h^{-1}$ Mpc of the quasar. The association of highly opaque sightlines with galaxy underdensities in these two fields is consistent with models in which the scatter in Ly$α$ opacity is driven by large-scale fluctuations in the ionizing UV background, or by an ultra-late reionization that has not yet concluded at $z=5.7$.

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