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Yongqiang Chen

Publications and source records attributed to Yongqiang Chen.

At least 37 records · Page 2Linked to original sources
arXiv2025

Retrieval-Augmented Generation with Hierarchical Knowledge

Graph-based Retrieval-Augmented Generation (RAG) methods have significantly enhanced the performance of large language models (LLMs) in domain-specific tasks. However, existing RAG methods do not adequately utilize the naturally inherent hierarchical knowledge in human cognition, which limits the capabilities of RAG systems. In this paper, we introduce a new RAG approach, called HiRAG, which utilizes hierarchical knowledge to enhance the semantic understanding and structure capturing capabilities of RAG systems in the indexing and retrieval processes. Our extensive experiments demonstrate that HiRAG achieves significant performance improvements over the state-of-the-art baseline methods.

cs.CL↗
arXiv2025

MESH -- Understanding Videos Like Human: Measuring Hallucinations in Large Video Models

Large Video Models (LVMs) build on the semantic capabilities of Large Language Models (LLMs) and vision modules by integrating temporal information to better understand dynamic video content. Despite their progress, LVMs are prone to hallucinations-producing inaccurate or irrelevant descriptions. Current benchmarks for video hallucination depend heavily on manual categorization of video content, neglecting the perception-based processes through which humans naturally interpret videos. We introduce MESH, a benchmark designed to evaluate hallucinations in LVMs systematically. MESH uses a Question-Answering framework with binary and multi-choice formats incorporating target and trap instances. It follows a bottom-up approach, evaluating basic objects, coarse-to-fine subject features, and subject-action pairs, aligning with human video understanding. We demonstrate that MESH offers an effective and comprehensive approach for identifying hallucinations in videos. Our evaluations show that while LVMs excel at recognizing basic objects and features, their susceptibility to hallucinations increases markedly when handling fine details or aligning multiple actions involving various subjects in longer videos.

cs.CV↗
arXiv2025

Pruning Spurious Subgraphs for Graph Out-of-Distribution Generalization

Graph Neural Networks (GNNs) often encounter significant performance degradation under distribution shifts between training and test data, hindering their applicability in real-world scenarios. Recent studies have proposed various methods to address the out-of-distribution generalization challenge, with many methods in the graph domain focusing on directly identifying an invariant subgraph that is predictive of the target label. However, we argue that identifying the edges from the invariant subgraph directly is challenging and error-prone, especially when some spurious edges exhibit strong correlations with the targets. In this paper, we propose PrunE, the first pruning-based graph OOD method that eliminates spurious edges to improve OOD generalizability. By pruning spurious edges, PrunE retains the invariant subgraph more comprehensively, which is critical for OOD generalization. Specifically, PrunE employs two regularization terms to prune spurious edges: 1) graph size constraint to exclude uninformative spurious edges, and 2) $ε$-probability alignment to further suppress the occurrence of spurious edges. Through theoretical analysis and extensive experiments, we show that PrunE achieves superior OOD performance and outperforms previous state-of-the-art methods significantly. Codes are available at: \href{https://github.com/tianyao-aka/PrunE-GraphOOD}{https://github.com/tianyao-aka/PrunE-GraphOOD}.

cs.LG↗
arXiv2025

Generalizable Audio Deepfake Detection via Hierarchical Structure Learning and Feature Whitening in Poincaré sphere

Audio deepfake detection (ADD) faces critical generalization challenges due to diverse real-world spoofing attacks and domain variations. However, existing methods primarily rely on Euclidean distances, failing to adequately capture the intrinsic hierarchical structures associated with attack categories and domain factors. To address these issues, we design a novel framework Poin-HierNet to construct domain-invariant hierarchical representations in the Poincaré sphere. Poin-HierNet includes three key components: 1) Poincaré Prototype Learning (PPL) with several data prototypes aligning sample features and capturing multilevel hierarchies beyond human labels; 2) Hierarchical Structure Learning (HSL) leverages top prototypes to establish a tree-like hierarchical structure from data prototypes; and 3) Poincaré Feature Whitening (PFW) enhances domain invariance by applying feature whitening to suppress domain-sensitive features. We evaluate our approach on four datasets: ASVspoof 2019 LA, ASVspoof 2021 LA, ASVspoof 2021 DF, and In-The-Wild. Experimental results demonstrate that Poin-HierNet exceeds state-of-the-art methods in Equal Error Rate.

cs.SD↗
arXiv2025

Weak-to-Strong GraphRAG: Aligning Weak Retrievers with Large Language Models for Graph-based Retrieval Augmented Generation

Graph-based retrieval-augmented generation (RAG) enables large language models (LLMs) to ground responses with structured external knowledge from up-to-date knowledge graphs (KGs) and reduce hallucinations. However, LLMs often rely on a weak retriever in graph-based RAG: I) Due to the lack of ground truth, the retriever is often trained on weak supervision, which often introduces spurious signals to the LLMs. II) Due to the abstraction of graph data, the retrieved knowledge is often presented in unorganized forms. To mitigate the issue, we present Refined Graph-based RAG (ReG) to align weak retrievers to LLMs for graph-based RAG. Specifically, ReG incorporates LLM feedback to get rid of spurious signals and improve the quality of the supervision. Meanwhile, ReG introduces a structure-aware reorganization module to refactor the retrieval results into logically coherent evidence chains. Experiments on prominent benchmarks demonstrate that ReG significantly and consistently brings improvements across different LLM backbones by up to 10%. The improved supervision quality enables ReG to match the state-of-the-art performance with 5% training data and to transfer to out-of-distribution KGs. Notably, when adopted to reasoning-based LLMs, ReG reduces the reasoning token cost by up to 30% and improves the performance by up to 4%.

cs.CL↗
arXiv2025

Learning Causality for Modern Machine Learning

In the past decades, machine learning with Empirical Risk Minimization (ERM) has demonstrated great capability in learning and exploiting the statistical patterns from data, or even surpassing humans. Despite the success, ERM avoids the modeling of causality the way of understanding and handling changes, which is fundamental to human intelligence. When deploying models beyond the training environment, distribution shifts are everywhere. For example, an autopilot system often needs to deal with new weather conditions that have not been seen during training, An Al-aided drug discovery system needs to predict the biochemical properties of molecules with respect to new viruses such as COVID-19. It renders the problem of Out-of-Distribution (OOD) generalization challenging to conventional machine learning. In this thesis, we investigate how to incorporate and realize the causality for broader tasks in modern machine learning. In particular, we exploit the invariance implied by the principle of independent causal mechanisms (ICM), that is, the causal mechanisms generating the effects from causes do not inform or influence each other. Therefore, the conditional distribution between the target variable given its causes is invariant under distribution shifts. With the causal invariance principle, we first instantiate it to graphs -- a general data structure ubiquitous in many real-world industry and scientific applications, such as financial networks and molecules. Then, we shall see how learning the causality benefits many of the desirable properties of modern machine learning, in terms of (i) OOD generalization capability; (ii) interpretability; and (iii) robustness to adversarial attacks. Realizing the causality in machine learning, on the other hand, raises a dilemma for optimization in conventional machine learning, as it often contradicts the objective of ERM...

cs.LG↗
arXiv2025

HIGHT: Hierarchical Graph Tokenization for Molecule-Language Alignment

Recently, there has been a surge of interest in extending the success of large language models (LLMs) from texts to molecules. Most existing approaches adopt a graph neural network to represent a molecule as a series of node tokens for molecule-language alignment, which, however, have overlooked the inherent hierarchical structures in molecules. Notably, higher-order molecular structures contain rich semantics of functional groups, which encode crucial biochemical functionalities of the molecules. We show that neglecting the hierarchical information in tokenization will lead to subpar molecule-language alignment and severe hallucination. To address this limitation, we propose HIerarchical GrapH Tokenization (HIGHT). HIGHT employs a hierarchical graph tokenizer that encodes the hierarchy of atom, motif, and molecular levels of informative tokens to improve the molecular perception of LLMs. HIGHT also adopts an augmented instruction tuning dataset, enriched with the hierarchical graph information, to further enhance the molecule-language alignment. Extensive experiments on 14 real-world benchmarks verify the effectiveness of HIGHT in reducing hallucination by 40%, and significant improvements in various molecule-language downstream tasks. The project is available at https: //higraphllm.github.io/.

cs.CL↗
arXiv2025

DivIL: Unveiling and Addressing Over-Invariance for Out-of- Distribution Generalization

Out-of-distribution generalization is a common problem that expects the model to perform well in the different distributions even far from the train data. A popular approach to addressing this issue is invariant learning (IL), in which the model is compiled to focus on invariant features instead of spurious features by adding strong constraints during training. However, there are some potential pitfalls of strong invariant constraints. Due to the limited number of diverse environments and over-regularization in the feature space, it may lead to a loss of important details in the invariant features while alleviating the spurious correlations, namely the over-invariance, which can also degrade the generalization performance. We theoretically define the over-invariance and observe that this issue occurs in various classic IL methods. To alleviate this issue, we propose a simple approach Diverse Invariant Learning (DivIL) by adding the unsupervised contrastive learning and the random masking mechanism compensatory for the invariant constraints, which can be applied to various IL methods. Furthermore, we conduct experiments across multiple modalities across 12 datasets and 6 classic models, verifying our over-invariance insight and the effectiveness of our DivIL framework. Our code is available at https://github.com/kokolerk/DivIL.

cs.LG↗
arXiv2025

On the Thinking-Language Modeling Gap in Large Language Models

System 2 reasoning is one of the defining characteristics of intelligence, which requires slow and logical thinking. Human conducts System 2 reasoning via the language of thoughts that organizes the reasoning process as a causal sequence of mental language, or thoughts. Recently, it has been observed that System 2 reasoning can be elicited from Large Language Models (LLMs) pre-trained on large-scale natural languages. However, in this work, we show that there is a significant gap between the modeling of languages and thoughts. As language is primarily a tool for humans to share knowledge and thinking, modeling human language can easily absorb language biases into LLMs deviated from the chain of thoughts in minds. Furthermore, we show that the biases will mislead the eliciting of "thoughts" in LLMs to focus only on a biased part of the premise. To this end, we propose a new prompt technique termed Language-of-Thoughts (LoT) to demonstrate and alleviate this gap. Instead of directly eliciting the chain of thoughts from partial information, LoT instructs LLMs to adjust the order and token used for the expressions of all the relevant information. We show that the simple strategy significantly reduces the language modeling biases in LLMs and improves the performance of LLMs across a variety of reasoning tasks.

cs.CL↗
arXiv2025

Can Large Language Models Help Experimental Design for Causal Discovery?

Designing proper experiments and selecting optimal intervention targets is a longstanding problem in scientific or causal discovery. Identifying the underlying causal structure from observational data alone is inherently difficult. Obtaining interventional data, on the other hand, is crucial to causal discovery, yet it is usually expensive and time-consuming to gather sufficient interventional data to facilitate causal discovery. Previous approaches commonly utilize uncertainty or gradient signals to determine the intervention targets. However, numerical-based approaches may yield suboptimal results due to the inaccurate estimation of the guiding signals at the beginning when with limited interventional data. In this work, we investigate a different approach, whether we can leverage Large Language Models (LLMs) to assist with the intervention targeting in causal discovery by making use of the rich world knowledge about the experimental design in LLMs. Specifically, we present Large Language Model Guided Intervention Targeting (LeGIT) -- a robust framework that effectively incorporates LLMs to augment existing numerical approaches for the intervention targeting in causal discovery. Across 4 realistic benchmark scales, LeGIT demonstrates significant improvements and robustness over existing methods and even surpasses humans, which demonstrates the usefulness of LLMs in assisting with experimental design for scientific discovery.

cs.AI↗
arXiv2025

BrainOOD: Out-of-distribution Generalizable Brain Network Analysis

In neuroscience, identifying distinct patterns linked to neurological disorders, such as Alzheimer's and Autism, is critical for early diagnosis and effective intervention. Graph Neural Networks (GNNs) have shown promising in analyzing brain networks, but there are two major challenges in using GNNs: (1) distribution shifts in multi-site brain network data, leading to poor Out-of-Distribution (OOD) generalization, and (2) limited interpretability in identifying key brain regions critical to neurological disorders. Existing graph OOD methods, while effective in other domains, struggle with the unique characteristics of brain networks. To bridge these gaps, we introduce BrainOOD, a novel framework tailored for brain networks that enhances GNNs' OOD generalization and interpretability. BrainOOD framework consists of a feature selector and a structure extractor, which incorporates various auxiliary losses including an improved Graph Information Bottleneck (GIB) objective to recover causal subgraphs. By aligning structure selection across brain networks and filtering noisy features, BrainOOD offers reliable interpretations of critical brain regions. Our approach outperforms 16 existing methods and improves generalization to OOD subjects by up to 8.5%. Case studies highlight the scientific validity of the patterns extracted, which aligns with the findings in known neuroscience literature. We also propose the first OOD brain network benchmark, which provides a foundation for future research in this field. Our code is available at https://github.com/AngusMonroe/BrainOOD.

cs.LG↗
arXiv2024

Eliciting Causal Abilities in Large Language Models for Reasoning Tasks

Prompt optimization automatically refines prompting expressions, unlocking the full potential of LLMs in downstream tasks. However, current prompt optimization methods are costly to train and lack sufficient interpretability. This paper proposes enhancing LLMs' reasoning performance by eliciting their causal inference ability from prompting instructions to correct answers. Specifically, we introduce the Self-Causal Instruction Enhancement (SCIE) method, which enables LLMs to generate high-quality, low-quantity observational data, then estimates the causal effect based on these data, and ultimately generates instructions with the optimized causal effect. In SCIE, the instructions are treated as the treatment, and textual features are used to process natural language, establishing causal relationships through treatments between instructions and downstream tasks. Additionally, we propose applying Object-Relational (OR) principles, where the uncovered causal relationships are treated as the inheritable class across task objects, ensuring low-cost reusability. Extensive experiments demonstrate that our method effectively generates instructions that enhance reasoning performance with reduced training cost of prompts, leveraging interpretable textual features to provide actionable insights.

cs.CL↗
arXiv2024

Beyond Pixels: Text Enhances Generalization in Real-World Image Restoration

Generalization has long been a central challenge in real-world image restoration. While recent diffusion-based restoration methods, which leverage generative priors from text-to-image models, have made progress in recovering more realistic details, they still encounter "generative capability deactivation" when applied to out-of-distribution real-world data. To address this, we propose using text as an auxiliary invariant representation to reactivate the generative capabilities of these models. We begin by identifying two key properties of text input: richness and relevance, and examine their respective influence on model performance. Building on these insights, we introduce Res-Captioner, a module that generates enhanced textual descriptions tailored to image content and degradation levels, effectively mitigating response failures. Additionally, we present RealIR, a new benchmark designed to capture diverse real-world scenarios. Extensive experiments demonstrate that Res-Captioner significantly enhances the generalization abilities of diffusion-based restoration models, while remaining fully plug-and-play.

cs.CV↗
arXiv2024

On the Comparison between Multi-modal and Single-modal Contrastive Learning

Multi-modal contrastive learning with language supervision has presented a paradigm shift in modern machine learning. By pre-training on a web-scale dataset, multi-modal contrastive learning can learn high-quality representations that exhibit impressive robustness and transferability. Despite its empirical success, the theoretical understanding is still in its infancy, especially regarding its comparison with single-modal contrastive learning. In this work, we introduce a feature learning theory framework that provides a theoretical foundation for understanding the differences between multi-modal and single-modal contrastive learning. Based on a data generation model consisting of signal and noise, our analysis is performed on a ReLU network trained with the InfoMax objective function. Through a trajectory-based optimization analysis and generalization characterization on downstream tasks, we identify the critical factor, which is the signal-to-noise ratio (SNR), that impacts the generalizability in downstream tasks of both multi-modal and single-modal contrastive learning. Through the cooperation between the two modalities, multi-modal learning can achieve better feature learning, leading to improvements in performance in downstream tasks compared to single-modal learning. Our analysis provides a unified framework that can characterize the optimization and generalization of both single-modal and multi-modal contrastive learning. Empirical experiments on both synthetic and real-world datasets further consolidate our theoretical findings.

cs.LG↗
arXiv2024

A Sober Look at the Robustness of CLIPs to Spurious Features

Large vision language models, such as CLIP, demonstrate impressive robustness to spurious features than single-modal models trained on ImageNet. However, existing test datasets are typically curated based on ImageNet-trained models, which aim to capture the spurious features inherited in ImageNet. Benchmarking CLIP models based on the ImageNet-oriented spurious features may not be sufficient to reflect the extent to which CLIP models are robust to spurious correlations within CLIP training data, e.g., LAION. To this end, we craft a new challenging dataset named CounterAnimal designed to reveal the reliance of CLIP models on realistic spurious features. Specifically, we split animal photos into groups according to the backgrounds, and then identify a pair of groups for each class where a CLIP model shows high-performance drops across the two groups. Our evaluations show that the spurious features captured by CounterAnimal are generically learned by CLIP models with different backbones and pre-train data, yet have limited influence for ImageNet models. We provide theoretical insights that the CLIP objective cannot offer additional robustness. Furthermore, we also re-evaluate strategies such as scaling up parameters and high-quality pre-trained data. We find that they still help mitigate the spurious features, providing a promising path for future developments.

cs.CV↗
arXiv2024

Empowering Graph Invariance Learning with Deep Spurious Infomax

Recently, there has been a surge of interest in developing graph neural networks that utilize the invariance principle on graphs to generalize the out-of-distribution (OOD) data. Due to the limited knowledge about OOD data, existing approaches often pose assumptions about the correlation strengths of the underlying spurious features and the target labels. However, this prior is often unavailable and will change arbitrarily in the real-world scenarios, which may lead to severe failures of the existing graph invariance learning methods. To bridge this gap, we introduce a novel graph invariance learning paradigm, which induces a robust and general inductive bias. The paradigm is built upon the observation that the infomax principle encourages learning spurious features regardless of spurious correlation strengths. We further propose the EQuAD framework that realizes this learning paradigm and employs tailored learning objectives that provably elicit invariant features by disentangling them from the spurious features learned through infomax. Notably, EQuAD shows stable and enhanced performance across different degrees of bias in synthetic datasets and challenging real-world datasets up to $31.76\%$. Our code is available at \url{https://github.com/tianyao-aka/EQuAD}.

cs.LG↗
arXiv2024

RLTP: Reinforcement Learning to Pace for Delayed Impression Modeling in Preloaded Ads

To increase brand awareness, many advertisers conclude contracts with advertising platforms to purchase traffic and then deliver advertisements to target audiences. In a whole delivery period, advertisers usually desire a certain impression count for the ads, and they also expect that the delivery performance is as good as possible (e.g., obtaining high click-through rate). Advertising platforms employ pacing algorithms to satisfy the demands via adjusting the selection probabilities to traffic requests in real-time. However, the delivery procedure is also affected by the strategies from publishers, which cannot be controlled by advertising platforms. Preloading is a widely used strategy for many types of ads (e.g., video ads) to make sure that the response time for displaying after a traffic request is legitimate, which results in delayed impression phenomenon. Traditional pacing algorithms cannot handle the preloading nature well because they rely on immediate feedback signals, and may fail to guarantee the demands from advertisers. In this paper, we focus on a new research problem of impression pacing for preloaded ads, and propose a Reinforcement Learning To Pace framework RLTP. It learns a pacing agent that sequentially produces selection probabilities in the whole delivery period. To jointly optimize the two objectives of impression count and delivery performance, RLTP employs tailored reward estimator to satisfy the guaranteed impression count, penalize the over-delivery and maximize the traffic value. Experiments on large-scale industrial datasets verify that RLTP outperforms baseline pacing algorithms by a large margin. We have deployed the RLTP framework online to our advertising platform, and results show that it achieves significant uplift to core metrics including delivery completion rate and click-through rate.

cs.IR↗
arXiv2024

How Interpretable Are Interpretable Graph Neural Networks?

Interpretable graph neural networks (XGNNs ) are widely adopted in various scientific applications involving graph-structured data. Existing XGNNs predominantly adopt the attention-based mechanism to learn edge or node importance for extracting and making predictions with the interpretable subgraph. However, the representational properties and limitations of these methods remain inadequately explored. In this work, we present a theoretical framework that formulates interpretable subgraph learning with the multilinear extension of the subgraph distribution, coined as subgraph multilinear extension (SubMT). Extracting the desired interpretable subgraph requires an accurate approximation of SubMT, yet we find that the existing XGNNs can have a huge gap in fitting SubMT. Consequently, the SubMT approximation failure will lead to the degenerated interpretability of the extracted subgraphs. To mitigate the issue, we design a new XGNN architecture called Graph Multilinear neT (GMT), which is provably more powerful in approximating SubMT. We empirically validate our theoretical findings on a number of graph classification benchmarks. The results demonstrate that GMT outperforms the state-of-the-art up to 10% in terms of both interpretability and generalizability across 12 regular and geometric graph benchmarks.

cs.LG↗