arXiv subjects

Yoram Bresler

Publications and source records attributed to Yoram Bresler.

At least 19 recordsLinked to original sources

arXiv2025

RSR-NF: Neural Field Regularization by Static Restoration Priors for Dynamic Imaging

Dynamic imaging involves the reconstruction of a spatio-temporal object at all times using its undersampled measurements. In particular, in dynamic computed tomography (dCT), only a single projection at one view angle is available at a time, making the inverse problem very challenging. Moreover, ground-truth dynamic data is usually either unavailable or too scarce to be used for supervised learning techniques. To tackle this problem, we propose RSR-NF, which uses a neural field (NF) to represent the dynamic object and, using the Regularization-by-Denoising (RED) framework, incorporates an additional static deep spatial prior into a variational formulation via a learned restoration operator. We use an ADMM-based algorithm with variable splitting to efficiently optimize the variational objective. We compare RSR-NF to three alternatives: NF with only temporal regularization; a recent method combining a partially-separable low-rank representation with RED using a denoiser pretrained on static data; and a deep-image prior-based model. The first comparison demonstrates the reconstruction improvements achieved by combining the NF representation with static restoration priors, whereas the other two demonstrate the improvement over state-of-the art techniques for dCT.

eess.IV↗

arXiv2025

Learned Bayesian Cramér-Rao Bound for Unknown Measurement Models Using Score Neural Networks

The Bayesian Cramér-Rao bound (BCRB) is a crucial tool in signal processing for assessing the fundamental limitations of any estimation problem as well as benchmarking within a Bayesian frameworks. However, the BCRB cannot be computed without full knowledge of the prior and the measurement distributions. In this work, we propose a fully learned Bayesian Cramér-Rao bound (LBCRB) that learns both the prior and the measurement distributions. Specifically, we suggest two approaches to obtain the LBCRB: the Posterior Approach and the Measurement-Prior Approach. The Posterior Approach provides a simple method to obtain the LBCRB, whereas the Measurement-Prior Approach enables us to incorporate domain knowledge to improve the sample complexity and {interpretability}. To achieve this, we introduce a Physics-encoded score neural network which enables us to easily incorporate such domain knowledge into a neural network. We {study the learning} errors of the two suggested approaches theoretically, and validate them numerically. We demonstrate the two approaches on several signal processing examples, including a linear measurement problem with unknown mixing and Gaussian noise covariance matrices, frequency estimation, and quantized measurement. In addition, we test our approach on a nonlinear signal processing problem of frequency estimation with real-world underwater ambient noise.

eess.SP↗

arXiv2024

RED-PSM: Regularization by Denoising of Factorized Low Rank Models for Dynamic Imaging

Dynamic imaging addresses the recovery of a time-varying 2D or 3D object at each time instant using its undersampled measurements. In particular, in the case of dynamic tomography, only a single projection at a single view angle may be available at a time, making the problem severely ill-posed. We propose an approach, RED-PSM, which combines for the first time two powerful techniques to address this challenging imaging problem. The first, are non-parametric factorized low rank models, also known as partially separable models (PSMs), which have been used to efficiently introduce a low-rank prior for the spatio-temporal object. The second is the recent Regularization by Denoising (RED), which provides a flexible framework to exploit the impressive performance of state-of-the-art image denoising algorithms, for various inverse problems. We propose a partially separable objective with RED and a computationally efficient and scalable optimization scheme with variable splitting and ADMM. Theoretical analysis proves the convergence of our objective to a value corresponding to a stationary point satisfying the first-order optimality conditions. Convergence is accelerated by a particular projection-domain-based initialization. We demonstrate the performance and computational improvements of our proposed RED-PSM with a learned image denoiser by comparing it to a recent deep-prior-based method known as TD-DIP. Although the main focus is on dynamic tomography, we also show performance advantages of RED-PSM in a cardiac dynamic MRI setting.

eess.IV↗

arXiv2022

Learning to Bound: A Generative Cramér-Rao Bound

The Cramér-Rao bound (CRB), a well-known lower bound on the performance of any unbiased parameter estimator, has been used to study a wide variety of problems. However, to obtain the CRB, requires an analytical expression for the likelihood of the measurements given the parameters, or equivalently a precise and explicit statistical model for the data. In many applications, such a model is not available. Instead, this work introduces a novel approach to approximate the CRB using data-driven methods, which removes the requirement for an analytical statistical model. This approach is based on the recent success of deep generative models in modeling complex, high-dimensional distributions. Using a learned normalizing flow model, we model the distribution of the measurements and obtain an approximation of the CRB, which we call Generative Cramér-Rao Bound (GCRB). Numerical experiments on simple problems validate this approach, and experiments on two image processing tasks of image denoising and edge detection with a learned camera noise model demonstrate its power and benefits.

cs.LG↗

arXiv2022

Dynamic Tomography Reconstruction by Projection-Domain Separable Modeling

In dynamic tomography the object undergoes changes while projections are being acquired sequentially in time. The resulting inconsistent set of projections cannot be used directly to reconstruct an object corresponding to a time instant. Instead, the objective is to reconstruct a spatio-temporal representation of the object, which can be displayed as a movie. We analyze conditions for unique and stable solution of this ill-posed inverse problem, and present a recovery algorithm, validating it experimentally. We compare our approach to one based on the recently proposed GMLR variation on deep prior for video, demonstrating the advantages of the proposed approach.

eess.IV↗

arXiv2022

Scatter Correction in X-ray CT by Physics-Inspired Deep Learning

Scatter due to interaction of photons with the imaged object is a fundamental problem in X-ray Computed Tomography (CT). It manifests as various artifacts in the reconstruction, making its abatement or correction critical for image quality. Despite success in specific settings, hardware-based methods require modification in the hardware, or increase in the scan time or dose. This accounts for the great interest in software-based methods, including Monte-Carlo based scatter estimation, analytical-numerical, and kernel-based methods, with data-driven learning-based approaches demonstrated recently. In this work, two novel physics-inspired deep-learning-based methods, PhILSCAT and OV-PhILSCAT, are proposed. The methods estimate and correct for the scatter in the acquired projection measurements. Different from previous works, they incorporate both an initial reconstruction of the object of interest and the scatter-corrupted measurements related to it, and use a deep neural network architecture and cost function, both specifically tailored to the problem. Numerical experiments with data generated by Monte-Carlo simulations of the imaging of phantoms reveal consistent improvement over a recent purely projection-domain deep neural network scatter correction method.

physics.med-ph↗

arXiv2021

Circumventing the resolution-time tradeoff in Ultrasound Localization Microscopy by Velocity Filtering

Ultrasound Localization Microscopy (ULM) offers a cost-effective modality for microvascular imaging by using intravascular contrast agents (microbubbles). However, ULM has a fundamental trade-off between acquisition time and spatial resolution, which makes clinical translation challenging. In this paper, in order to circumvent the trade-off, we introduce a spatiotemporal filtering operation dubbed velocity filtering, which is capable of separating contrast agents into different groups based on their vector velocities thus reducing interference in the localization step, while simultaneously offering blood velocity mapping at super resolution, without tracking individual microbubbles. As side benefit, the velocity filter provides noise suppression before microbubble localization that could enable substantially increased penetration depth in tissue typically by 4cm or more. We provide a theoretical analysis of the performance of velocity filter. Numerical experiments confirm that the proposed velocity filter is able to separate the microbubbles with respect to the speed and direction of their motion. In combination with subsequent localization of microbubble centers, e.g. by matched filtering, the velocity filter improves the quality of the reconstructed vasculature significantly and provides blood flow information. Overall, the proposed imaging pipeline in this paper enables the use of higher concentrations of microbubbles while preserving spatial resolution, thus helping circumvent the trade-off between acquisition time and spatial resolution. Conveniently, because the velocity filtering operation can be implemented by fast Fourier transforms(FFTs) it admits fast, and potentially real-time realization. We believe that the proposed velocity filtering method has the potential to pave the way to clinical translation of ULM.

eess.SP↗

arXiv2021

Joint Dimensionality Reduction for Separable Embedding Estimation

Low-dimensional embeddings for data from disparate sources play critical roles in multi-modal machine learning, multimedia information retrieval, and bioinformatics. In this paper, we propose a supervised dimensionality reduction method that learns linear embeddings jointly for two feature vectors representing data of different modalities or data from distinct types of entities. We also propose an efficient feature selection method that complements, and can be applied prior to, our joint dimensionality reduction method. Assuming that there exist true linear embeddings for these features, our analysis of the error in the learned linear embeddings provides theoretical guarantees that the dimensionality reduction method accurately estimates the true embeddings when certain technical conditions are satisfied and the number of samples is sufficiently large. The derived sample complexity results are echoed by numerical experiments. We apply the proposed dimensionality reduction method to gene-disease association, and predict unknown associations using kernel regression on the dimension-reduced feature vectors. Our approach compares favorably against other dimensionality reduction methods, and against a state-of-the-art method of bilinear regression for predicting gene-disease associations.

cs.LG↗

arXiv2020

Composition-Aware Spectroscopic Tomography

Chemical imaging provides information about the distribution of chemicals within a target. When combined with structural information about the target, in situ chemical imaging opens the door to applications ranging from tissue classification to industrial process monitoring. The combination of infrared spectroscopy and optical microscopy is a powerful tool for chemical imaging of thin targets. Unfortunately, extending this technique to targets with appreciable depth is prohibitively slow. We combine confocal microscopy and infrared spectroscopy to provide chemical imaging in three spatial dimensions. Interferometric measurements are acquired at a small number of focal depths, and images are formed by solving a regularized inverse scattering problem. A low-dimensional signal model is key to our approach: we assume the target comprises a finite number of distinct chemical species. We establish conditions on the constituent spectra and the number of measurements needed for unique recovery of the target. Simulations illustrate imaging of cellular phantoms and sub-wavelength targets from noisy measurements.

eess.IV↗

arXiv2020

A Set-Theoretic Study of the Relationships of Image Models and Priors for Restoration Problems

Image prior modeling is the key issue in image recovery, computational imaging, compresses sensing, and other inverse problems. Recent algorithms combining multiple effective priors such as the sparse or low-rank models, have demonstrated superior performance in various applications. However, the relationships among the popular image models are unclear, and no theory in general is available to demonstrate their connections. In this paper, we present a theoretical analysis on the image models, to bridge the gap between applications and image prior understanding, including sparsity, group-wise sparsity, joint sparsity, and low-rankness, etc. We systematically study how effective each image model is for image restoration. Furthermore, we relate the denoising performance improvement by combining multiple models, to the image model relationships. Extensive experiments are conducted to compare the denoising results which are consistent with our analysis. On top of the model-based methods, we quantitatively demonstrate the image properties that are inexplicitly exploited by deep learning method, of which can further boost the denoising performance by combining with its complementary image models.

eess.IV↗

arXiv2020

Improving Robustness of Deep-Learning-Based Image Reconstruction

Deep-learning-based methods for different applications have been shown vulnerable to adversarial examples. These examples make deployment of such models in safety-critical tasks questionable. Use of deep neural networks as inverse problem solvers has generated much excitement for medical imaging including CT and MRI, but recently a similar vulnerability has also been demonstrated for these tasks. We show that for such inverse problem solvers, one should analyze and study the effect of adversaries in the measurement-space, instead of the signal-space as in previous work. In this paper, we propose to modify the training strategy of end-to-end deep-learning-based inverse problem solvers to improve robustness. We introduce an auxiliary network to generate adversarial examples, which is used in a min-max formulation to build robust image reconstruction networks. Theoretically, we show for a linear reconstruction scheme the min-max formulation results in a singular-value(s) filter regularized solution, which suppresses the effect of adversarial examples occurring because of ill-conditioning in the measurement matrix. We find that a linear network using the proposed min-max learning scheme indeed converges to the same solution. In addition, for non-linear Compressed Sensing (CS) reconstruction using deep networks, we show significant improvement in robustness using the proposed approach over other methods. We complement the theory by experiments for CS on two different datasets and evaluate the effect of increasing perturbations on trained networks. We find the behavior for ill-conditioned and well-conditioned measurement matrices to be qualitatively different.

cs.LG↗

arXiv2019

Transform Learning for Magnetic Resonance Image Reconstruction: From Model-based Learning to Building Neural Networks

Magnetic resonance imaging (MRI) is widely used in clinical practice, but it has been traditionally limited by its slow data acquisition. Recent advances in compressed sensing (CS) techniques for MRI reduce acquisition time while maintaining high image quality. Whereas classical CS assumes the images are sparse in known analytical dictionaries or transform domains, methods using learned image models for reconstruction have become popular. The model could be pre-learned from datasets, or learned simultaneously with the reconstruction, i.e., blind CS (BCS). Besides the well-known synthesis dictionary model, recent advances in transform learning (TL) provide an efficient alternative framework for sparse modeling in MRI. TL-based methods enjoy numerous advantages including exact sparse coding, transform update, and clustering solutions, cheap computation, and convergence guarantees, and provide high-quality results in MRI compared to popular competing methods. This paper provides a review of some recent works in MRI reconstruction from limited data, with focus on the recent TL-based methods. A unified framework for incorporating various TL-based models is presented. We discuss the connections between transform learning and convolutional or filter bank models and corresponding multi-layer extensions, with connections to deep learning. Finally, we discuss recent trends in MRI, open problems, and future directions for the field.

eess.IV↗

arXiv2019

GAN-based Projector for Faster Recovery with Convergence Guarantees in Linear Inverse Problems

A Generative Adversarial Network (GAN) with generator $G$ trained to model the prior of images has been shown to perform better than sparsity-based regularizers in ill-posed inverse problems. Here, we propose a new method of deploying a GAN-based prior to solve linear inverse problems using projected gradient descent (PGD). Our method learns a network-based projector for use in the PGD algorithm, eliminating expensive computation of the Jacobian of $G$. Experiments show that our approach provides a speed-up of $60\text{-}80\times$ over earlier GAN-based recovery methods along with better accuracy. Our main theoretical result is that if the measurement matrix is moderately conditioned on the manifold range($G$) and the projector is $δ$-approximate, then the algorithm is guaranteed to reach $O(δ)$ reconstruction error in $O(log(1/δ))$ steps in the low noise regime. Additionally, we propose a fast method to design such measurement matrices for a given $G$. Extensive experiments demonstrate the efficacy of this method by requiring $5\text{-}10\times$ fewer measurements than random Gaussian measurement matrices for comparable recovery performance. Because the learning of the GAN and projector is decoupled from the measurement operator, our GAN-based projector and recovery algorithm are applicable without retraining to all linear inverse problems, as confirmed by experiments on compressed sensing, super-resolution, and inpainting.

cs.LG↗

arXiv2019

Multichannel Sparse Blind Deconvolution on the Sphere

Multichannel blind deconvolution is the problem of recovering an unknown signal $f$ and multiple unknown channels $x_i$ from their circular convolution $y_i=x_i \circledast f$ ($i=1,2,\dots,N$). We consider the case where the $x_i$'s are sparse, and convolution with $f$ is invertible. Our nonconvex optimization formulation solves for a filter $h$ on the unit sphere that produces sparse output $y_i\circledast h$. Under some technical assumptions, we show that all local minima of the objective function correspond to the inverse filter of $f$ up to an inherent sign and shift ambiguity, and all saddle points have strictly negative curvatures. This geometric structure allows successful recovery of $f$ and $x_i$ using a simple manifold gradient descent (MGD) algorithm. Our theoretical findings are complemented by numerical experiments, which demonstrate superior performance of the proposed approach over the previous methods.

cs.IT↗

arXiv2018

Bounding Multivariate Trigonometric Polynomials with Applications to Filter Bank Design

The extremal values of multivariate trigonometric polynomials are of interest in fields ranging from control theory to filter design, but finding the extremal values of such a polynomial is generally NP-Hard. In this paper, we develop simple and efficiently computable estimates of the extremal values of a multivariate trigonometric polynomial directly from its samples. We provide an upper bound on the modulus of a complex trigonometric polynomial, and develop upper and lower bounds for real trigonometric polynomials. For a univarite polynomial, these bounds are tighter than existing bounds, and the extension to multivariate polynomials is new. As an application, the lower bound provides a sufficient condition to certify global positivity of a real trigonometric polynomial. We use this condition to motivate a new algorithm for multi-dimensional, multirate, perfect reconstruction filter bank design. We demonstrate our algorithm by designing a 2D perfect reconstruction filter bank.

eess.SP↗

arXiv2018

The Power of Complementary Regularizers: Image Recovery via Transform Learning and Low-Rank Modeling

Recent works on adaptive sparse and on low-rank signal modeling have demonstrated their usefulness in various image / video processing applications. Patch-based methods exploit local patch sparsity, whereas other works apply low-rankness of grouped patches to exploit image non-local structures. However, using either approach alone usually limits performance in image reconstruction or recovery applications. In this work, we propose a simultaneous sparsity and low-rank model, dubbed STROLLR, to better represent natural images. In order to fully utilize both the local and non-local image properties, we develop an image restoration framework using a transform learning scheme with joint low-rank regularization. The approach owes some of its computational efficiency and good performance to the use of transform learning for adaptive sparse representation rather than the popular synthesis dictionary learning algorithms, which involve approximation of NP-hard sparse coding and expensive learning steps. We demonstrate the proposed framework in various applications to image denoising, inpainting, and compressed sensing based magnetic resonance imaging. Results show promising performance compared to state-of-the-art competing methods.

cs.CV↗

arXiv2018

Learning Filter Bank Sparsifying Transforms

Data is said to follow the transform (or analysis) sparsity model if it becomes sparse when acted on by a linear operator called a sparsifying transform. Several algorithms have been designed to learn such a transform directly from data, and data-adaptive sparsifying transforms have demonstrated excellent performance in signal restoration tasks. Sparsifying transforms are typically learned using small sub-regions of data called patches, but these algorithms often ignore redundant information shared between neighboring patches. We show that many existing transform and analysis sparse representations can be viewed as filter banks, thus linking the local properties of patch-based model to the global properties of a convolutional model. We propose a new transform learning framework where the sparsifying transform is an undecimated perfect reconstruction filter bank. Unlike previous transform learning algorithms, the filter length can be chosen independently of the number of filter bank channels. Numerical results indicate filter bank sparsifying transforms outperform existing patch-based transform learning for image denoising while benefiting from additional flexibility in the design process.

stat.ML↗

arXiv2017

Optimal Sample Complexity for Stable Matrix Recovery

Tremendous efforts have been made to study the theoretical and algorithmic aspects of sparse recovery and low-rank matrix recovery. This paper fills a theoretical gap in matrix recovery: the optimal sample complexity for stable recovery without constants or log factors. We treat sparsity, low-rankness, and potentially other parsimonious structures within the same framework: constraint sets that have small covering numbers or Minkowski dimensions. We consider three types of random measurement matrices (unstructured, rank-1, and symmetric rank-1 matrices), following probability distributions that satisfy some mild conditions. In all these cases, we prove a fundamental result -- the recovery of matrices with parsimonious structures, using an optimal (or near optimal) number of measurements, is stable with high probability.

cs.IT↗