arXiv subjects

Yoshinori Harada

Publications and source records attributed to Yoshinori Harada.

4 recordsLinked to original sources

arXiv2024

Beyond the Nucleus: Cytoplasmic Dominance in Follicular Thyroid Carcinoma Detection Using Single-Cell Raman Imaging Across Multiple Devices

Cytological diagnosis of follicular thyroid carcinoma (FTC) is one of major challenges in the field of endocrine oncology due to absence of evident morphological indicators. Morphological abnormalities in the nucleus are typically key indicators in cancer cytopathology and are attributed to a range of biochemical alterations in nuclear components. Consequently, Raman spectroscopy has been widely used to detect cancer in various cytological samples, often identifying biochemical changes prior to observable morphological alterations. However, in the case of FTC, cytoplasmic features such as carotenoids, cytochromes, and lipid droplets have shown greater diagnostic relevance compared to nuclear features. This study leverages single-cell Raman imaging to explore the spatial origin of diagnostic signals in FTC and normal thyroid (NT) cells, assessing the contributions of the nucleus and cytoplasm independently. Our results demonstrate that Raman spectra from the cytoplasmic region can distinguish between FTC and NT cells with an accuracy of 84% under co-culture conditions, maintaining robustness across multiple devices. In contrast, classification based on nuclear spectra achieved only 53% accuracy, suggesting that biochemical alterations in the cytoplasm play a more significant role in FTC detection than those in the nucleus. Our work elevates the promise of Raman-based cytopathology by providing complementary organelle-dependent information to traditional diagnostic methods and demonstrating transferability across different devices.

q-bio.QM↗

arXiv2022

Gaussian Process Classification Bandits

Classification bandits are multi-armed bandit problems whose task is to classify a given set of arms into either positive or negative class depending on whether the rate of the arms with the expected reward of at least h is not less than w for given thresholds h and w. We study a special classification bandit problem in which arms correspond to points x in d-dimensional real space with expected rewards f(x) which are generated according to a Gaussian process prior. We develop a framework algorithm for the problem using various arm selection policies and propose policies called FCB and FTSV. We show a smaller sample complexity upper bound for FCB than that for the existing algorithm of the level set estimation, in which whether f(x) is at least h or not must be decided for every arm's x. Arm selection policies depending on an estimated rate of arms with rewards of at least h are also proposed and shown to improve empirical sample complexity. According to our experimental results, the rate-estimation versions of FCB and FTSV, together with that of the popular active learning policy that selects the point with the maximum variance, outperform other policies for synthetic functions, and the version of FTSV is also the best performer for our real-world dataset.

cs.LG↗

arXiv2022

Plasmon-molecule remote coupling via column-structured silica layer for enhancing biophotonic analysis

We demonstrated remote plasmonic enhancement (RPE) by a dense random array of Ag nanoislands (AgNIs) that were partially gold-alloyed and attached with column-structured silica (CSS) overlayer of more than 100 nm in thickness. The physical and chemical protection of the CSS layer could lead to reducing the mutual impact between analyte molecules and metal nanostructures. RPE plate was realized just by sputtering and chemical immersion processes, resulting in high productivity. We found a significant enhancement on the order of 10$^7$-fold for Raman scattering and 10$^2$-fold for fluorescence by RPE even without the proximity of metal nanostructures and analyte molecules. We confirmed the feasibility of RPE for biophotonic analysis. RPE worked for dye molecules in cells cultured on the CSS layer, enabling the enhanced fluorescence biosensing of intracellular signaling dynamics in HeLa cells. RPE also worked for biological tissues, enhancing Raman histological imaging of esophagus tissues with esophageal adventitia of a Wistar rat attached atop the CSS layer. We also investigated the wavelength dependency of RPE on the on- or off-resonant with the dye molecular transition dipoles with various molecular concentrations. The results suggested that the RPE occurred by remote resonant coupling between the localized surface plasmon of AgNIs and the molecular transition dipole of the analyte via the CSS structure. The RPE plate affords practical advantages for potential biophotonic analyses such as high productivity and biocompatibility. We thus anticipate that RPE will advance to versatile analytical tools in chemistry, biology, and medicine.

physics.optics↗

arXiv2018

Label-free evaluation of myocardial infarct in surgically excised ventricular myocardium by Raman spectroscopy

Understanding the viability of the ischemic myocardial tissue is a critical issue in determining the appropriate surgical procedure for patients with chronic heart failure after myocardial infarction (MI). Conventional MI evaluation methods are; however, preoperatively performed and/or give an indirect information of myocardial viability such as shape, color, and blood flow. In this study, we realize the evaluation of MI in patients undergoing cardiac surgery by Raman spectroscopy under label-free conditions, which is based on intrinsic molecular constituents related to myocardial viability. We identify key signatures of Raman spectra for the evaluation of myocardial viability by evaluating the infarct border zone myocardium that were excised from five patients under surgical ventricular restoration. We also obtain a prediction model to differentiate the infarcted myocardium from the non-infarcted myocardium by applying partial least squares regression-discriminant analysis (PLS-DA) to the Raman spectra. Our prediction model enables identification of the infarcted tissues and the non-infarcted tissues with sensitivities of 99.98% and 99.92%, respectively. Furthermore, the prediction model of the Raman images of the infarct border zone enabled us to visualize boundaries between these distinct regions. Our novel application of Raman spectroscopy to the human heart would be a useful means for the detection of myocardial viability during surgery.

physics.med-ph↗