arXiv subjects

Youngjoo Cho

Publications and source records attributed to Youngjoo Cho.

6 recordsLinked to original sources

arXiv2026

ICODEN: Ordinary Differential Equation Neural Networks for Interval-Censored Data

Predicting time-to-event outcomes when event times are interval censored is challenging because the exact event time is unobserved. Many existing survival analysis approaches for interval-censored data rely on strong model assumptions or cannot handle high-dimensional predictors. We develop ICODEN, an ordinary differential equation-based neural network for interval-censored data that models the hazard function through deep neural networks and obtains the cumulative hazard by solving an ordinary differential equation. ICODEN does not require the proportional hazards assumption or a prespecified parametric form for the hazard function, thereby permitting flexible survival modeling. Across simulation settings with proportional or non-proportional hazards and both linear and nonlinear covariate effects, ICODEN consistently achieves satisfactory predictive accuracy and remains stable as the number of predictors increases. Applications to data from multiple phases of the Alzheimer's Disease Neuroimaging Initiative (ADNI) and to two Age-Related Eye Disease Studies (AREDS and AREDS2) for age-related macular degeneration (AMD) demonstrate ICODEN's robust prediction performance. In both applications, predicting time-to-AD or time-to-late AMD, ICODEN effectively uses hundreds to more than 1,000 SNPs and supports data-driven subgroup identification with differential progression risk profiles. These results establish ICODEN as a practical assumption-lean tool for prediction with interval-censored survival data in high-dimensional biomedical settings.

cs.LG↗

arXiv2021

Regression Trees and Ensembles for Cumulative Incidence Functions

The use of cumulative incidence functions for characterizing the risk of one type of event in the presence of others has become increasingly popular over the past decade. The problems of modeling, estimation and inference have been treated using parametric, nonparametric and semi-parametric methods. Efforts to develop suitable extensions of machine learning methods, such as regression trees and related ensemble methods, have begun comparatively recently. In this paper, we propose a novel approach to estimating cumulative incidence curves in a competing risks setting using regression trees and associated ensemble estimators. The proposed methods employ augmented estimators of the Brier score risk as the primary basis for building and pruning trees, and lead to methods that are easily implemented using existing R packages. Data from the Radiation Therapy Oncology Group (trial 9410) is used to illustrate these new methods.

stat.ME↗

arXiv2020

Regression Trees for Cumulative Incidence Functions

The use of cumulative incidence functions for characterizing the risk of one type of event in the presence of others has become increasingly popular over the past decade. The problems of modeling, estimation and inference have been treated using parametric, nonparametric and semi-parametric methods. Efforts to develop suitable extensions of machine learning methods, such as regression trees and related ensemble methods, have begun only recently. In this paper, we develop a novel approach to building regression trees for estimating cumulative incidence curves in a competing risks setting. The proposed methods employ augmented estimators of the Brier score risk as the primary basis for building and pruning trees. The proposed methods are easily implemented using the R statistical software package. Simulation studies demonstrate the utility of our approach in the competing risks setting. Data from the Radiation Therapy Oncology Group (trial 9410) is used to illustrate these new methods.

stat.ME↗

arXiv2020

Bridging linearity-based and kernel-based sufficient dimension reduction

There has been a lot of interest in sufficient dimension reduction (SDR) methodologies as well as nonlinear extensions in the statistics literature. In this note, we use classical results regarding metric spaces and positive definite functions to link linear SDR procedures to their nonlinear counterparts.

stat.ME↗

arXiv2019

Analysis of regression discontinuity designs using censored data

In medical settings, treatment assignment may be determined by a clinically important covariate that predicts patients' risk of event. There is a class of methods from the social science literature known as regression discontinuity (RD) designs that can be used to estimate the treatment effect in this situation. Under certain assumptions, such an estimand enjoys a causal interpretation. However, few authors have discussed the use of RD for censored data. In this paper, we show how to estimate causal effects under the regression discontinuity design for censored data. The proposed estimation procedure employs a class of censoring unbiased transformations that includes inverse probability censored weighting and doubly robust transformation schemes. Simulation studies demonstrate the utility of the proposed methodology.

stat.ME↗

arXiv2018

Predictive Directions for Individualized Treatment Selection in Clinical Trials

In many clinical trials, individuals in different subgroups have experience differential treatment effects. This leads to individualized differences in treatment benefit. In this article, we introduce the general concept of predictive directions, which are risk scores motivated by potential outcomes considerations. These techniques borrow heavily from sufficient dimension reduction (SDR) and causal inference methodology. Under some conditions, one can use existing methods from the SDR literature to estimate the directions assuming an idealized complete data structure, which subsequently yields an obvious extension to clinical trial datasets. In addition, we generalize the direction idea to a nonlinear setting that exploits support vector machines. The methodology is illustrated with application to a series of colorectal cancer clinical trials.

stat.ME↗