arXiv subjects

Yu Gan

Publications and source records attributed to Yu Gan.

At least 37 records · Page 2Linked to original sources

arXiv2023

Automated player identification and indexing using two-stage deep learning network

American football games attract significant worldwide attention every year. Identifying players from videos in each play is also essential for the indexing of player participation. Processing football game video presents great challenges such as crowded settings, distorted objects, and imbalanced data for identifying players, especially jersey numbers. In this work, we propose a deep learning-based player tracking system to automatically track players and index their participation per play in American football games. It is a two-stage network design to highlight areas of interest and identify jersey number information with high accuracy. First, we utilize an object detection network, a detection transformer, to tackle the player detection problem in a crowded context. Second, we identify players using jersey number recognition with a secondary convolutional neural network, then synchronize it with a game clock subsystem. Finally, the system outputs a complete log in a database for play indexing. We demonstrate the effectiveness and reliability of player tracking system by analyzing the qualitative and quantitative results on football videos. The proposed system shows great potential for implementation in and analysis of football broadcast video.

cs.CV↗

arXiv2023

Push the Boundary of SAM: A Pseudo-label Correction Framework for Medical Segmentation

Segment anything model (SAM) has emerged as the leading approach for zero-shot learning in segmentation tasks, offering the advantage of avoiding pixel-wise annotations. It is particularly appealing in medical image segmentation, where the annotation process is laborious and expertise-demanding. However, the direct application of SAM often yields inferior results compared to conventional fully supervised segmentation networks. An alternative approach is to use SAM as the initial stage to generate pseudo labels for further network training. However, the performance is limited by the quality of pseudo labels. In this paper, we propose a novel label correction framework to push the boundary of SAM-based segmentation. Our model utilizes a label quality evaluation module to distinguish between noisy labels and clean labels. This enables the correction of the noisy labels using an uncertainty-based self-correction module, thereby enriching the clean training set. Finally, we retrain the segmentation network with updated labels to optimize its weights for future predictions. One key advantage of our model is its ability to train deep networks using SAM-generated pseudo labels without relying on a set of expert-level annotations while attaining good segmentation performance. We demonstrate the effectiveness of our proposed model on three public datasets, indicating its ability to improve segmentation accuracy and outperform baseline methods in label correction.

eess.IV↗

arXiv2023

SCPAT-GAN: Structural Constrained and Pathology Aware Convolutional Transformer-GAN for Virtual Histology Staining of Human Coronary OCT images

There is a significant need for the generation of virtual histological information from coronary optical coherence tomography (OCT) images to better guide the treatment of coronary artery disease. However, existing methods either require a large pixel-wisely paired training dataset or have limited capability to map pathological regions. To address these issues, we proposed a structural constrained, pathology aware, transformer generative adversarial network, namely SCPAT-GAN, to generate virtual stained H&E histology from OCT images. The proposed SCPAT-GAN advances existing methods via a novel design to impose pathological guidance on structural layers using transformer-based network.

eess.IV↗

arXiv2023

Frequency-aware optical coherence tomography image super-resolution via conditional generative adversarial neural network

Optical coherence tomography (OCT) has stimulated a wide range of medical image-based diagnosis and treatment in fields such as cardiology and ophthalmology. Such applications can be further facilitated by deep learning-based super-resolution technology, which improves the capability of resolving morphological structures. However, existing deep learning-based method only focuses on spatial distribution and disregard frequency fidelity in image reconstruction, leading to a frequency bias. To overcome this limitation, we propose a frequency-aware super-resolution framework that integrates three critical frequency-based modules (i.e., frequency transformation, frequency skip connection, and frequency alignment) and frequency-based loss function into a conditional generative adversarial network (cGAN). We conducted a large-scale quantitative study from an existing coronary OCT dataset to demonstrate the superiority of our proposed framework over existing deep learning frameworks. In addition, we confirmed the generalizability of our framework by applying it to fish corneal images and rat retinal images, demonstrating its capability to super-resolve morphological details in eye imaging.

physics.med-ph↗

arXiv2023

Detecting and measuring human gastric peristalsis using magnetically controlled capsule endoscope

Magnetically controlled capsule endoscope (MCCE) is an emerging tool for the diagnosis of gastric diseases with the advantages of comfort, safety, and no anesthesia. In this paper, we develop algorithms to detect and measure human gastric peristalsis (contraction wave) using video sequences acquired by MCCE. We develop a spatial-temporal deep learning algorithm to detect gastric contraction waves and measure human gastric peristalsis periods. The quality of MCCE video sequences is prone to camera motion. We design a camera motion detector (CMD) to process the MCCE video sequences, mitigating the camera movement during MCCE examination. To the best of our knowledge, we are the first to propose computer vision-based solutions to detect and measure human gastric peristalsis. Our methods have great potential in assisting the diagnosis of gastric diseases by evaluating gastric motility.

eess.IV↗

arXiv2023

Towards reliable calcification detection: calibration of uncertainty in coronary optical coherence tomography images

Optical coherence tomography (OCT) has become increasingly essential in assisting the treatment of coronary artery disease (CAD). Image-guided solutions such as Percutaneous Coronary Intervention (PCI) are extensively used during the treatment of CAD. However, unidentified calcified regions within a narrowed artery could impair the outcome of the PCI. Prior to treatments, object detection is paramount to automatically procure accurate readings on the location and thickness of calcifications within the artery. Deep learning-based object detection methods have been explored in a variety of applications. The quality of object detection predictions could lead to uncertain results, which are not desirable in safety-critical scenarios. In this work, we implement an object detection model, You-Only-Look-Once v5 (YOLO), on a calcification detection framework within coronary OCT images. We evaluate the uncertainty of predictions based on the expected calibration errors, thus assessing the certainty level of detection results. To calibrate confidence scores of predictions, we implement dependent logistic calibration using each detection result's confidence and center coordinates. With the calibrated confidence score of each prediction, we lower the uncertainty of predictions in calcification detection. Our results show that the YOLO achieves higher precision and recall in comparison with the other object detection model, meanwhile producing more reliable results. The calibrated confidence of prediction results in a confidence error of approximately 0.13, suggesting that the confidence calibration on calcification detection could provide a more trustworthy result, indicating a great potential to assist clinical evaluation of treating the CAD during the imaging-guided procedure.

eess.IV↗

arXiv2022

End-to-End Application Cloning for Distributed Cloud Microservices with Ditto

We present Ditto, an automated framework for cloning end-to-end cloud applications, both monolithic and microservices, which captures I/O and network activity, as well as kernel operations, in addition to application logic. Ditto takes a hierarchical approach to application cloning, starting with capturing the dependency graph across distributed services, to recreating each tier's control/data flow, and finally generating system calls and assembly that mimics the individual applications. Ditto does not reveal the logic of the original application, facilitating publicly sharing clones of production services with hardware vendors, cloud providers, and the research community. We show that across a diverse set of single- and multi-tier applications, Ditto accurately captures their CPU and memory characteristics as well as their high-level performance metrics, is portable across platforms, and facilitates a wide range of system studies.

cs.DC↗

arXiv2022

Structural constrained virtual histology staining for human coronary imaging using deep learning

Histopathological analysis is crucial in artery characterization for coronary artery disease (CAD). However, histology requires an invasive and time-consuming process. In this paper, we propose to generate virtual histology staining using Optical Coherence Tomography (OCT) images to enable real-time histological visualization. We develop a deep learning network, namely Coronary-GAN, to transfer coronary OCT images to virtual histology images. With a special consideration on the structural constraints in coronary OCT images, our method achieves better image generation performance than the conventional GAN-based method. The experimental results indicate that Coronary-GAN generates virtual histology images that are similar to real histology images, revealing the human coronary layers.

eess.IV↗

arXiv2022

Roles of scattered and ballistic photons in imaging through scattering media: a deep learning-based study

Scattering of light in complex media scrambles optical wavefronts and breaks the principles of conventional imaging methods. For decades, researchers have endeavored to conquer the problem by inventing approaches such as adaptive optics, iterative wavefront shaping, and transmission matrix measurement. That said, imaging through/into thick scattering media remains challenging to date. With the rapid development of computing power, deep learning has been introduced and shown potentials to reconstruct target information through complex media or from rough surfaces. But it also fails once coming to optically thick media where ballistic photons become negligible. Here, instead of treating deep learning only as an image extraction method, whose best-selling advantage is to avoid complicate physical models, we exploit it as a tool to explore the underlying physical principles. By adjusting the weights of ballistic and scattered photons through a random phasemask, it is found that although deep learning can extract images from both scattered and ballistic light, the mechanisms are different: scattering may function as an encryption key and decryption from scattered light is key sensitive, while extraction from ballistic light is stable. Based on this finding, it is hypothesized and experimentally confirmed that the foundation of the generalization capability of trained neural networks for different diffusers can trace back to the contribution of ballistic photons, even though their weights of photon counting in detection are not that significant. Moreover, the study may pave an avenue for using deep learning as a probe in exploring the unknown physical principles in various fields.

physics.optics↗

arXiv2022

Different Channels to Transmit Information in a Scattering Medium

A channel should be built to transmit information from one place to another. Imaging is 2 or higher dimensional information communication. Conventionally, an imaging channel comprises a lens and free spaces of its both sides. The transfer function of each part is known; thus, the response of a conventional imaging channel is known as well. Replacing the lens with a scattering layer, the image can still be extracted from the detection plane. That is to say, the scattering medium reconstructs the channel for imaging. Aided by deep learning, we find that different from the lens there are different channels in a scattering medium, i.e., the same scattering medium can construct different channels to match different manners of source encoding. Moreover, we found that without a valid channel the convolution law for a shift-invariant system, i.e., the output is the convolution of its point spread function (PSF) and the input object, is broken, and information cannot be transmitted onto the detection plane. In other words, valid channels are essential to transmit image information through even a shift-invariant system.

physics.optics↗

arXiv2022

Cardiac Adipose Tissue Segmentation via Image-Level Annotations

Automatically identifying the structural substrates underlying cardiac abnormalities can potentially provide real-time guidance for interventional procedures. With the knowledge of cardiac tissue substrates, the treatment of complex arrhythmias such as atrial fibrillation and ventricular tachycardia can be further optimized by detecting arrhythmia substrates to target for treatment (i.e., adipose) and identifying critical structures to avoid. Optical coherence tomography (OCT) is a real-time imaging modality that aids in addressing this need. Existing approaches for cardiac image analysis mainly rely on fully supervised learning techniques, which suffer from the drawback of workload on labor-intensive annotation process of pixel-wise labeling. To lessen the need for pixel-wise labeling, we develop a two-stage deep learning framework for cardiac adipose tissue segmentation using image-level annotations on OCT images of human cardiac substrates. In particular, we integrate class activation mapping with superpixel segmentation to solve the sparse tissue seed challenge raised in cardiac tissue segmentation. Our study bridges the gap between the demand on automatic tissue analysis and the lack of high-quality pixel-wise annotations. To the best of our knowledge, this is the first study that attempts to address cardiac tissue segmentation on OCT images via weakly supervised learning techniques. Within an in-vitro human cardiac OCT dataset, we demonstrate that our weakly supervised approach on image-level annotations achieves comparable performance as fully supervised methods trained on pixel-wise annotations.

eess.IV↗

arXiv2022

Multi-scale reconstruction of undersampled spectral-spatial OCT data for coronary imaging using deep learning

Coronary artery disease (CAD) is a cardiovascular condition with high morbidity and mortality. Intravascular optical coherence tomography (IVOCT) has been considered as an optimal imagining system for the diagnosis and treatment of CAD. Constrained by Nyquist theorem, dense sampling in IVOCT attains high resolving power to delineate cellular structures/ features. There is a trade-off between high spatial resolution and fast scanning rate for coronary imaging. In this paper, we propose a viable spectral-spatial acquisition method that down-scales the sampling process in both spectral and spatial domain while maintaining high quality in image reconstruction. The down-scaling schedule boosts data acquisition speed without any hardware modifications. Additionally, we propose a unified multi-scale reconstruction framework, namely Multiscale- Spectral-Spatial-Magnification Network (MSSMN), to resolve highly down-scaled (compressed) OCT images with flexible magnification factors. We incorporate the proposed methods into Spectral Domain OCT (SD-OCT) imaging of human coronary samples with clinical features such as stent and calcified lesions. Our experimental results demonstrate that spectral-spatial downscaled data can be better reconstructed than data that is downscaled solely in either spectral or spatial domain. Moreover, we observe better reconstruction performance using MSSMN than using existing reconstruction methods. Our acquisition method and multi-scale reconstruction framework, in combination, may allow faster SD-OCT inspection with high resolution during coronary intervention.

eess.IV↗

arXiv2022

Multi-scale Sparse Representation-Based Shadow Inpainting for Retinal OCT Images

Inpainting shadowed regions cast by superficial blood vessels in retinal optical coherence tomography (OCT) images is critical for accurate and robust machine analysis and clinical diagnosis. Traditional sequence-based approaches such as propagating neighboring information to gradually fill in the missing regions are cost-effective. But they generate less satisfactory outcomes when dealing with larger missing regions and texture-rich structures. Emerging deep learning-based methods such as encoder-decoder networks have shown promising results in natural image inpainting tasks. However, they typically need a long computational time for network training in addition to the high demand on the size of datasets, which makes it difficult to be applied on often small medical datasets. To address these challenges, we propose a novel multi-scale shadow inpainting framework for OCT images by synergically applying sparse representation and deep learning: sparse representation is used to extract features from a small amount of training images for further inpainting and to regularize the image after the multi-scale image fusion, while convolutional neural network (CNN) is employed to enhance the image quality. During the image inpainting, we divide preprocessed input images into different branches based on the shadow width to harvest complementary information from different scales. Finally, a sparse representation-based regularizing module is designed to refine the generated contents after multi-scale feature aggregation. Experiments are conducted to compare our proposal versus both traditional and deep learning-based techniques on synthetic and real-world shadows. Results demonstrate that our proposed method achieves favorable image inpainting in terms of visual quality and quantitative metrics, especially when wide shadows are presented.

cs.CV↗

arXiv2022

Frequency-Aware Physics-Inspired Degradation Model for Real-World Image Super-Resolution

Current learning-based single image super-resolution (SISR) algorithms underperform on real data due to the deviation in the assumed degrada-tion process from that in the real-world scenario. Conventional degradation processes consider applying blur, noise, and downsampling (typicallybicubic downsampling) on high-resolution (HR) images to synthesize low-resolution (LR) counterparts. However, few works on degradation modelling have taken the physical aspects of the optical imaging system intoconsideration. In this paper, we analyze the imaging system optically andexploit the characteristics of the real-world LR-HR pairs in the spatial frequency domain. We formulate a real-world physics-inspired degradationmodel by considering bothopticsandsensordegradation; The physical degradation of an imaging system is modelled as a low-pass filter, whose cut-off frequency is dictated by the object distance, the focal length of thelens, and the pixel size of the image sensor. In particular, we propose to use a convolutional neural network (CNN) to learn the cutoff frequency of real-world degradation process. The learned network is then applied to synthesize LR images from unpaired HR images. The synthetic HR-LR image pairs are later used to train an SISR network. We evaluatethe effectiveness and generalization capability of the proposed degradation model on real-world images captured by different imaging systems. Experimental results showcase that the SISR network trained by using our synthetic data performs favorably against the network using the traditional degradation model. Moreover, our results are comparable to that obtained by the same network trained by using real-world LR-HR pairs, which are challenging to obtain in real scenes.

eess.IV↗

arXiv2021

Sage: Leveraging ML to Diagnose Unpredictable Performance in Cloud Microservices

Cloud applications are increasingly shifting from large monolithic services, to complex graphs of loosely-coupled microservices. Despite their advantages, microservices also introduce cascading QoS violations in cloud applications, which are difficult to diagnose and correct. We present Sage, a ML-driven root cause analysis system for interactive cloud microservices. Sage leverages unsupervised learning models to circumvent the overhead of trace labeling, determines the root cause of unpredictable performance online, and applies corrective actions to restore performance. On experiments on both dedicated local clusters and large GCE clusters we show that Sage achieves high root cause detection accuracy and predictable performance.

cs.DC↗

arXiv2021

Multi-scale GCN-assisted two-stage network for joint segmentation of retinal layers and disc in peripapillary OCT images

An accurate and automated tissue segmentation algorithm for retinal optical coherence tomography (OCT) images is crucial for the diagnosis of glaucoma. However, due to the presence of the optic disc, the anatomical structure of the peripapillary region of the retina is complicated and is challenging for segmentation. To address this issue, we developed a novel graph convolutional network (GCN)-assisted two-stage framework to simultaneously label the nine retinal layers and the optic disc. Specifically, a multi-scale global reasoning module is inserted between the encoder and decoder of a U-shape neural network to exploit anatomical prior knowledge and perform spatial reasoning. We conducted experiments on human peripapillary retinal OCT images. The Dice score of the proposed segmentation network is 0.820$\pm$0.001 and the pixel accuracy is 0.830$\pm$0.002, both of which outperform those from other state-of-the-art techniques.

eess.IV↗

arXiv2021

Co-Seg: An Image Segmentation Framework Against Label Corruption

Supervised deep learning performance is heavily tied to the availability of high-quality labels for training. Neural networks can gradually overfit corrupted labels if directly trained on noisy datasets, leading to severe performance degradation at test time. In this paper, we propose a novel deep learning framework, namely Co-Seg, to collaboratively train segmentation networks on datasets which include low-quality noisy labels. Our approach first trains two networks simultaneously to sift through all samples and obtain a subset with reliable labels. Then, an efficient yet easily-implemented label correction strategy is applied to enrich the reliable subset. Finally, using the updated dataset, we retrain the segmentation network to finalize its parameters. Experiments in two noisy labels scenarios demonstrate that our proposed model can achieve results comparable to those obtained from supervised learning trained on the noise-free labels. In addition, our framework can be easily implemented in any segmentation algorithm to increase its robustness to noisy labels.

cs.LG↗

arXiv2021

Sage: Using Unsupervised Learning for Scalable Performance Debugging in Microservices

Cloud applications are increasingly shifting from large monolithic services to complex graphs of loosely-coupled microservices. Despite the advantages of modularity and elasticity microservices offer, they also complicate cluster management and performance debugging, as dependencies between tiers introduce backpressure and cascading QoS violations. We present Sage, a machine learning-driven root cause analysis system for interactive cloud microservices. Sage leverages unsupervised ML models to circumvent the overhead of trace labeling, captures the impact of dependencies between microservices to determine the root cause of unpredictable performance online, and applies corrective actions to recover a cloud service's QoS. In experiments on both dedicated local clusters and large clusters on Google Compute Engine we show that Sage consistently achieves over 93% accuracy in correctly identifying the root cause of QoS violations, and improves performance predictability.

cs.DC↗