arXiv subjects

Yu Guan

Publications and source records attributed to Yu Guan.

At least 55 records · Page 3Linked to original sources

arXiv2023

A library of quantitative markers of seizure severity

Purpose: Understanding fluctuations of seizure severity within individuals is important for defining treatment outcomes and response to therapy, as well as developing novel treatments for epilepsy. Current methods for grading seizure severity rely on qualitative interpretations from patients and clinicians. Quantitative measures of seizure severity would complement existing approaches, for EEG monitoring, outcome monitoring, and seizure prediction. Therefore, we developed a library of quantitative electroencephalographic (EEG) markers that assess the spread and intensity of abnormal electrical activity during and after seizures. Methods: We analysed intracranial EEG (iEEG) recordings of 1056 seizures from 63 patients. For each seizure, we computed 16 markers of seizure severity that capture the signal magnitude, spread, duration, and post-ictal suppression of seizures. Results: Quantitative EEG markers of seizure severity distinguished focal vs. subclinical and focal vs. FTBTC seizures across patients. In individual patients, 71% had a moderate to large difference (ranksum r > 0.3) between focal and subclinical seizures in three or more markers. Circadian and longer-term changes in severity were found for 67% and 53% of patients, respectively. Conclusion: We demonstrate the feasibility of using quantitative iEEG markers to measure seizure severity. Our quantitative markers distinguish between seizure types and are therefore sensitive to established qualitative differences in seizure severity. Our results also suggest that seizure severity is modulated over different timescales. We envisage that our proposed seizure severity library will be expanded and updated in collaboration with the epilepsy research community to include more measures and modalities.

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arXiv2022

Designing Compact Features for Remote Stroke Rehabilitation Monitoring using Wearable Accelerometers

Stroke is known as a major global health problem, and for stroke survivors it is key to monitor the recovery levels. However, traditional stroke rehabilitation assessment methods (such as the popular clinical assessment) can be subjective and expensive, and it is also less convenient for patients to visit clinics in a high frequency. To address this issue, in this work based on wearable sensing and machine learning techniques, we develop an automated system that can predict the assessment score in an objective manner. With wrist-worn sensors, accelerometer data is collected from 59 stroke survivors in free-living environments for a duration of 8 weeks, and we map the week-wise accelerometer data(3 days per week) to the assessment score by developing signal processing and predictive model pipeline. To achieve this, we propose two types of new features, which can encode the rehabilitation information from both paralysed and non-paralysed sides while suppressing the high level noises such as irrelevant daily activities. Based on the proposed features, we further develop the longitudinal mixed-effects model with Gaussian process prior (LMGP), which can model the random effects caused by different subjects and time slots (during the 8 weeks). Comprehensive experiments are conducted to evaluate our system on both acute and chronic patients, and the promising results suggest its effectiveness.

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arXiv2022

Simple Yet Surprisingly Effective Training Strategies for LSTMs in Sensor-Based Human Activity Recognition

Human Activity Recognition (HAR) is one of the core research areas in mobile and wearable computing. With the application of deep learning (DL) techniques such as CNN, recognizing periodic or static activities (e.g, walking, lying, cycling, etc.) has become a well studied problem. What remains a major challenge though is the sporadic activity recognition (SAR) problem, where activities of interest tend to be non periodic, and occur less frequently when compared with the often large amount of irrelevant background activities. Recent works suggested that sequential DL models (such as LSTMs) have great potential for modeling nonperiodic behaviours, and in this paper we studied some LSTM training strategies for SAR. Specifically, we proposed two simple yet effective LSTM variants, namely delay model and inverse model, for two SAR scenarios (with and without time critical requirement). For time critical SAR, the delay model can effectively exploit predefined delay intervals (within tolerance) in form of contextual information for improved performance. For regular SAR task, the second proposed, inverse model can learn patterns from the time series in an inverse manner, which can be complementary to the forward model (i.e.,LSTM), and combining both can boost the performance. These two LSTM variants are very practical, and they can be deemed as training strategies without alteration of the LSTM fundamentals. We also studied some additional LSTM training strategies, which can further improve the accuracy. We evaluated our models on two SAR and one non-SAR datasets, and the promising results demonstrated the effectiveness of our approaches in HAR applications.

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arXiv2022

Investigating Bayesian optimization for expensive-to-evaluate black box functions: Application in fluid dynamics

Bayesian optimization provides an effective method to optimize expensive-to-evaluate black box functions. It has been widely applied to problems in many fields, including notably in computer science, e.g. in machine learning to optimize hyperparameters of neural networks, and in engineering, e.g. in fluid dynamics to optimize control strategies that maximize drag reduction. This paper empirically studies and compares the performance and the robustness of common Bayesian optimization algorithms on a range of synthetic test functions to provide general guidance on the design of Bayesian optimization algorithms for specific problems. It investigates the choice of acquisition function, the effect of different numbers of training samples, the exact and Monte Carlo based calculation of acquisition functions, and both single-point and multi-point optimization. The test functions considered cover a wide selection of challenges and therefore serve as an ideal test bed to understand the performance of Bayesian optimization to specific challenges, and in general. To illustrate how these findings can be used to inform a Bayesian optimization setup tailored to a specific problem, two simulations in the area of computational fluid dynamics are optimized, giving evidence that suitable solutions can be found in a small number of evaluations of the objective function for complex, real problems. The results of our investigation can similarly be applied to other areas, such as machine learning and physical experiments, where objective functions are expensive to evaluate and their mathematical expressions are unknown.

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arXiv2022

Universal Generative Modeling in Dual-domain for Dynamic MR Imaging

Dynamic magnetic resonance image reconstruction from incomplete k-space data has generated great research interest due to its capability to reduce scan time. Never-theless, the reconstruction problem is still challenging due to its ill-posed nature. Recently, diffusion models espe-cially score-based generative models have exhibited great potential in algorithm robustness and usage flexi-bility. Moreover, the unified framework through the variance exploding stochastic differential equation (VE-SDE) is proposed to enable new sampling methods and further extend the capabilities of score-based gener-ative models. Therefore, by taking advantage of the uni-fied framework, we proposed a k-space and image Du-al-Domain collaborative Universal Generative Model (DD-UGM) which combines the score-based prior with low-rank regularization penalty to reconstruct highly under-sampled measurements. More precisely, we extract prior components from both image and k-space domains via a universal generative model and adaptively handle these prior components for faster processing while maintaining good generation quality. Experimental comparisons demonstrated the noise reduction and detail preservation abilities of the proposed method. Much more than that, DD-UGM can reconstruct data of differ-ent frames by only training a single frame image, which reflects the flexibility of the proposed model.

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arXiv2022

K-space and Image Domain Collaborative Energy based Model for Parallel MRI Reconstruction

Decreasing magnetic resonance (MR) image acquisition times can potentially make MR examinations more accessible. Prior arts including the deep learning models have been devoted to solving the problem of long MRI imaging time. Recently, deep generative models have exhibited great potentials in algorithm robustness and usage flexibility. Nevertheless, none of existing schemes can be learned or employed to the k-space measurement directly. Furthermore, how do the deep generative models work well in hybrid domain is also worth being investigated. In this work, by taking advantage of the deep energy-based models, we propose a k-space and image domain collaborative generative model to comprehensively estimate the MR data from under-sampled measurement. Experimental comparisons with the state-of-the-arts demonstrated that the proposed hybrid method has less error in reconstruction accuracy and is more stable under different acceleration factors

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arXiv2022

Part-aware Prototypical Graph Network for One-shot Skeleton-based Action Recognition

In this paper, we study the problem of one-shot skeleton-based action recognition, which poses unique challenges in learning transferable representation from base classes to novel classes, particularly for fine-grained actions. Existing meta-learning frameworks typically rely on the body-level representations in spatial dimension, which limits the generalisation to capture subtle visual differences in the fine-grained label space. To overcome the above limitation, we propose a part-aware prototypical representation for one-shot skeleton-based action recognition. Our method captures skeleton motion patterns at two distinctive spatial levels, one for global contexts among all body joints, referred to as body level, and the other attends to local spatial regions of body parts, referred to as the part level. We also devise a class-agnostic attention mechanism to highlight important parts for each action class. Specifically, we develop a part-aware prototypical graph network consisting of three modules: a cascaded embedding module for our dual-level modelling, an attention-based part fusion module to fuse parts and generate part-aware prototypes, and a matching module to perform classification with the part-aware representations. We demonstrate the effectiveness of our method on two public skeleton-based action recognition datasets: NTU RGB+D 120 and NW-UCLA.

cs.CV↗

arXiv2022

Action Quality Assessment with Temporal Parsing Transformer

Action Quality Assessment(AQA) is important for action understanding and resolving the task poses unique challenges due to subtle visual differences. Existing state-of-the-art methods typically rely on the holistic video representations for score regression or ranking, which limits the generalization to capture fine-grained intra-class variation. To overcome the above limitation, we propose a temporal parsing transformer to decompose the holistic feature into temporal part-level representations. Specifically, we utilize a set of learnable queries to represent the atomic temporal patterns for a specific action. Our decoding process converts the frame representations to a fixed number of temporally ordered part representations. To obtain the quality score, we adopt the state-of-the-art contrastive regression based on the part representations. Since existing AQA datasets do not provide temporal part-level labels or partitions, we propose two novel loss functions on the cross attention responses of the decoder: a ranking loss to ensure the learnable queries to satisfy the temporal order in cross attention and a sparsity loss to encourage the part representations to be more discriminative. Extensive experiments show that our proposed method outperforms prior work on three public AQA benchmarks by a considerable margin.

cs.CV↗

arXiv2022

New Riemannian preconditioned algorithms for tensor completion via polyadic decomposition

We propose new Riemannian preconditioned algorithms for low-rank tensor completion via the polyadic decomposition of a tensor. These algorithms exploit a non-Euclidean metric on the product space of the factor matrices of the low-rank tensor in the polyadic decomposition form. This new metric is designed using an approximation of the diagonal blocks of the Hessian of the tensor completion cost function, thus has a preconditioning effect on these algorithms. We prove that the proposed Riemannian gradient descent algorithm globally converges to a stationary point of the tensor completion problem, with convergence rate estimates using the $Ł$ojasiewicz property. Numerical results on synthetic and real-world data suggest that the proposed algorithms are more efficient in memory and time compared to state-of-the-art algorithms. Moreover, the proposed algorithms display a greater tolerance for overestimated rank parameters in terms of the tensor recovery performance, thus enable a flexible choice of the rank parameter.

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arXiv2022

Learning Disentangled Behaviour Patterns for Wearable-based Human Activity Recognition

In wearable-based human activity recognition (HAR) research, one of the major challenges is the large intra-class variability problem. The collected activity signal is often, if not always, coupled with noises or bias caused by personal, environmental, or other factors, making it difficult to learn effective features for HAR tasks, especially when with inadequate data. To address this issue, in this work, we proposed a Behaviour Pattern Disentanglement (BPD) framework, which can disentangle the behavior patterns from the irrelevant noises such as personal styles or environmental noises, etc. Based on a disentanglement network, we designed several loss functions and used an adversarial training strategy for optimization, which can disentangle activity signals from the irrelevant noises with the least dependency (between them) in the feature space. Our BPD framework is flexible, and it can be used on top of existing deep learning (DL) approaches for feature refinement. Extensive experiments were conducted on four public HAR datasets, and the promising results of our proposed BPD scheme suggest its flexibility and effectiveness. This is an open-source project, and the code can be found at http://github.com/Jie-su/BPD

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arXiv2021

Ubi-SleepNet: Advanced Multimodal Fusion Techniques for Three-stage Sleep Classification Using Ubiquitous Sensing

Sleep is a fundamental physiological process that is essential for sustaining a healthy body and mind. The gold standard for clinical sleep monitoring is polysomnography(PSG), based on which sleep can be categorized into five stages, including wake/rapid eye movement sleep (REM sleep)/Non-REM sleep 1 (N1)/Non-REM sleep 2 (N2)/Non-REM sleep 3 (N3). However, PSG is expensive, burdensome, and not suitable for daily use. For long-term sleep monitoring, ubiquitous sensing may be a solution. Most recently, cardiac and movement sensing has become popular in classifying three-stage sleep, since both modalities can be easily acquired from research-grade or consumer-grade devices (e.g., Apple Watch). However, how best to fuse the data for the greatest accuracy remains an open question. In this work, we comprehensively studied deep learning (DL)-based advanced fusion techniques consisting of three fusion strategies alongside three fusion methods for three-stage sleep classification based on two publicly available datasets. Experimental results demonstrate important evidence that three-stage sleep can be reliably classified by fusing cardiac/movement sensing modalities, which may potentially become a practical tool to conduct large-scale sleep stage assessment studies or long-term self-tracking on sleep. To accelerate the progression of sleep research in the ubiquitous/wearable computing community, we made this project open source, and the code can be found at: https://github.com/bzhai/Ubi-SleepNet.

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arXiv2021

LSTA-Net: Long short-term Spatio-Temporal Aggregation Network for Skeleton-based Action Recognition

Modelling various spatio-temporal dependencies is the key to recognising human actions in skeleton sequences. Most existing methods excessively relied on the design of traversal rules or graph topologies to draw the dependencies of the dynamic joints, which is inadequate to reflect the relationships of the distant yet important joints. Furthermore, due to the locally adopted operations, the important long-range temporal information is therefore not well explored in existing works. To address this issue, in this work we propose LSTA-Net: a novel Long short-term Spatio-Temporal Aggregation Network, which can effectively capture the long/short-range dependencies in a spatio-temporal manner. We devise our model into a pure factorised architecture which can alternately perform spatial feature aggregation and temporal feature aggregation. To improve the feature aggregation effect, a channel-wise attention mechanism is also designed and employed. Extensive experiments were conducted on three public benchmark datasets, and the results suggest that our approach can capture both long-and-short range dependencies in the space and time domain, yielding higher results than other state-of-the-art methods. Code available at https://github.com/tailin1009/LSTA-Net.

cs.CV↗

arXiv2021

MRI Reconstruction Using Deep Energy-Based Model

Purpose: Although recent deep energy-based generative models (EBMs) have shown encouraging results in many image generation tasks, how to take advantage of the self-adversarial cogitation in deep EBMs to boost the performance of Magnetic Resonance Imaging (MRI) reconstruction is still desired. Methods: With the successful application of deep learning in a wide range of MRI reconstruction, a line of emerging research involves formulating an optimization-based reconstruction method in the space of a generative model. Leveraging this, a novel regularization strategy is introduced in this article which takes advantage of self-adversarial cogitation of the deep energy-based model. More precisely, we advocate for alternative learning a more powerful energy-based model with maximum likelihood estimation to obtain the deep energy-based information, represented as image prior. Simultaneously, implicit inference with Langevin dynamics is a unique property of re-construction. In contrast to other generative models for reconstruction, the proposed method utilizes deep energy-based information as the image prior in reconstruction to improve the quality of image. Results: Experiment results that imply the proposed technique can obtain remarkable performance in terms of high reconstruction accuracy that is competitive with state-of-the-art methods, and does not suffer from mode collapse. Conclusion: Algorithmically, an iterative approach was presented to strengthen EBM training with the gradient of energy network. The robustness and the reproducibility of the algorithm were also experimentally validated. More importantly, the proposed reconstruction framework can be generalized for most MRI reconstruction scenarios.

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arXiv2021

Learning Multi-Granular Spatio-Temporal Graph Network for Skeleton-based Action Recognition

The task of skeleton-based action recognition remains a core challenge in human-centred scene understanding due to the multiple granularities and large variation in human motion. Existing approaches typically employ a single neural representation for different motion patterns, which has difficulty in capturing fine-grained action classes given limited training data. To address the aforementioned problems, we propose a novel multi-granular spatio-temporal graph network for skeleton-based action classification that jointly models the coarse- and fine-grained skeleton motion patterns. To this end, we develop a dual-head graph network consisting of two interleaved branches, which enables us to extract features at two spatio-temporal resolutions in an effective and efficient manner. Moreover, our network utilises a cross-head communication strategy to mutually enhance the representations of both heads. We conducted extensive experiments on three large-scale datasets, namely NTU RGB+D 60, NTU RGB+D 120, and Kinetics-Skeleton, and achieves the state-of-the-art performance on all the benchmarks, which validates the effectiveness of our method.

cs.CV↗

arXiv2021

Discriminative Latent Semantic Graph for Video Captioning

Video captioning aims to automatically generate natural language sentences that can describe the visual contents of a given video. Existing generative models like encoder-decoder frameworks cannot explicitly explore the object-level interactions and frame-level information from complex spatio-temporal data to generate semantic-rich captions. Our main contribution is to identify three key problems in a joint framework for future video summarization tasks. 1) Enhanced Object Proposal: we propose a novel Conditional Graph that can fuse spatio-temporal information into latent object proposal. 2) Visual Knowledge: Latent Proposal Aggregation is proposed to dynamically extract visual words with higher semantic levels. 3) Sentence Validation: A novel Discriminative Language Validator is proposed to verify generated captions so that key semantic concepts can be effectively preserved. Our experiments on two public datasets (MVSD and MSR-VTT) manifest significant improvements over state-of-the-art approaches on all metrics, especially for BLEU-4 and CIDEr. Our code is available at https://github.com/baiyang4/D-LSG-Video-Caption.

cs.CV↗

arXiv2021

Towards Automated Fatigue Assessment using Wearable Sensing and Mixed-Effects Models

Fatigue is a broad, multifactorial concept that includes the subjective perception of reduced physical and mental energy levels. It is also one of the key factors that strongly affect patients' health-related quality of life. To date, most fatigue assessment methods were based on self-reporting, which may suffer from many factors such as recall bias. To address this issue, in this work, we recorded multi-modal physiological data (including ECG, accelerometer, skin temperature and respiratory rate, as well as demographic information such as age, BMI) in free-living environments and developed automated fatigue assessment models. Specifically, we extracted features from each modality and employed the random forest-based mixed-effects models, which can take advantage of the demographic information for improved performance. We conducted experiments on our collected dataset, and very promising preliminary results were achieved. Our results suggested ECG played an important role in the fatigue assessment tasks.

cs.HC↗

arXiv2021

Sovereign: User-Controlled Smart Homes

Recent years have witnessed the rapid deployment of smart homes; most of them are controlled by remote servers in the cloud. Such designs raise security and privacy concerns for end users. In this paper, we describe the design of Sovereign, a home IoT system framework that provides end users complete control of their home IoT systems. Sovereign lets home IoT devices and applications communicate via application-named data and secures data directly. This enables direct, secure, one-to-one and one-to-many device-to-device communication over wireless broadcast media. Sovereign utilizes semantic names to construct usable security solutions. We implement Sovereign as a publish-subscribe-based development platform together with a prototype home IoT controller. Our preliminary evaluation shows that Sovereign provides a systematic, easy-to-use solution to user-controlled, self-contained smart homes running on existing IoT hardware without imposing noticeable overhead.

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arXiv2021

Iterative Reconstruction for Low-Dose CT using Deep Gradient Priors of Generative Model

Dose reduction in computed tomography (CT) is essential for decreasing radiation risk in clinical applications. Iterative reconstruction is one of the most promising ways to compensate for the increased noise due to reduction of photon flux. Rather than most existing prior-driven algorithms that benefit from manually designed prior functions or supervised learning schemes, in this work we integrate the data-consistency as a conditional term into the iterative generative model for low-dose CT. At the stage of prior learning, the gradient of data density is directly learned from normal-dose CT images as a prior. Then at the iterative reconstruction stage, the stochastic gradient descent is employed to update the trained prior with annealed and conditional schemes. The distance between the reconstructed image and the manifold is minimized along with data fidelity during reconstruction. Experimental comparisons demonstrated the noise reduction and detail preservation abilities of the proposed method.

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