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Yu Shi

Publications and source records attributed to Yu Shi.

At least 55 records · Page 3Linked to original sources
arXiv2026

AgenticSZZ: Temporal Knowledge Graph-Guided Agentic Bug-Inducing Commit Identification

Identifying Bug-Inducing Commits (BICs) is fundamental for understanding software defects and enabling downstream tasks such as defect prediction and automated program repair. Yet existing SZZ-based approaches rely on git blame, restricting the search space to commits that directly modified the fixed lines. Our preliminary study on 2,102 validated bug-fixing commits reveals this limitation is significant: 28% of BICs require traversing commit history beyond blame results and 14% are blameless. We present AgenticSZZ, the first approach to apply Temporal Knowledge Graphs (TKGs) to software evolution analysis. AgenticSZZ reframes BIC identification from ranking blame commits into a graph search problem, where temporal ordering is fundamental to causal reasoning about bug introduction. The approach operates in two phases: (1) constructing a TKG that encodes commits with temporal and structural relationships, expanding the search space by traversing file history backward from blame commits and the bug-fixing commit; and (2) leveraging an LLM agent to navigate the graph using specialized tools for candidate exploration and causal analysis. Evaluation on three datasets shows that AgenticSZZ achieves F1-scores of 0.47 to 0.79, with statistically significant F1 improvements over state-of-the-art by up to 34%. Ablation confirms that both components and context expansion each contribute: the TKG and agent form an exploration-exploitation synergy, while context expansion unlocks ancestor BIC discovery, yielding 60 additional true positives. A sensitivity analysis across five open-weight LLMs reveals that effective TKG navigation requires sufficiently capable models, and that the TKG architecture amplifies stronger LLMs, widening the advantage. By transforming BIC identification into graph search, we open a new direction for temporal and causal reasoning in software evolution analysis.

cs.SE↗
arXiv2026

Probing Saturation Effect in Heavy Meson Pair Correlation in Forward $pA$ Collisions

Forward two-particle angular correlations in $pA$ collisions have long been recognized as a particularly sensitive observable for exploring gluon saturation effects. In the back-to-back regime, two-particle correlations receive substantial contributions from both soft-gluon radiation and saturation effects. In this work, we study heavy meson pair correlation in forward proton-nucleus collisions by incorporating a unified Sudakov resummation for heavy meson pair correlations in the Color Glass Condensate effect theory. Our results are in good agreement with the $Δϕ$ data measured by the LHCb Collaboration for $D^0 \bar D^0$ pairs in forward $pp$ and $pA$ collisions, as well as $J/ψ$ pairs from $b\bar b$ decays in forward $pp$ collisions. Furthermore, we present predictions for $D\bar D$ and $B\bar B$ correlations in the forward rapidity regions at the Large Hadron Collider. A pronounced mass-hierarchy is observed in the nuclear modification factor, $R_{pA}\big|_{m_b}<R_{pA}\big|_{m_c}$, indicating stronger sensitivity to saturation effects at small $x$. As the rapidity increases, the suppression becomes more pronounced while the mass hierarchy remains robust. This study will help us to search for the saturation signal via heavy-meson pair correlations in forward $pA$ collisions.

hep-ph↗
arXiv2026

Opportunistic Bone-Loss Screening from Routine Knee Radiographs Using a Multi-Task Deep Learning Framework with Sensitivity-Constrained Threshold Optimization

Background: Osteoporosis and osteopenia are often undiagnosed until fragility fractures occur. Dual-energy X-ray absorptiometry (DXA) is the reference standard for bone mineral density (BMD) assessment, but access remains limited. Knee radiographs are obtained at high volume for osteoarthritis evaluation and may offer an opportunity for opportunistic bone-loss screening. Objective: To develop and evaluate a multi-task deep learning system for opportunistic bone-loss screening from routine knee radiographs without additional imaging or patient visits. Methods: We developed STR-Net, a multi-task framework for single-channel grayscale knee radiographs. The model includes a shared backbone, global average pooling feature aggregation, a shared neck, and a task-aware representation routing module connected to three task-specific heads: binary screening (Normal vs. Bone Loss), severity sub-classification (Osteopenia vs. Osteoporosis), and weakly coupled T-score regression with optional clinical variables. A sensitivity-constrained threshold optimization strategy (minimum sensitivity >= 0.86) was applied. The dataset included 1,570 knee radiographs, split at the patient level into training (n=1,120), validation (n=226), and test (n=224) sets. Results: On the held-out test set, STR-Net achieved an AUROC of 0.933, sensitivity of 0.904, specificity of 0.773, and AUPRC of 0.956 for binary screening. Severity sub-classification achieved an AUROC of 0.898. The T-score regression branch showed a Pearson correlation of 0.801 with DXA-measured T-scores in a pilot subset (n=31), with MAE of 0.279 and RMSE of 0.347. Conclusions: STR-Net enables single-pass bone-loss screening, severity stratification, and quantitative T-score estimation from routine knee radiographs. Prospective clinical validation is needed before deployment.

cs.CV↗
arXiv2026

Cross-Distribution Diffusion Priors-Driven Iterative Reconstruction for Sparse-View CT

Sparse-View CT (SVCT) reconstruction enhances temporal resolution and reduces radiation dose, yet its clinical use is hindered by artifacts due to view reduction and domain shifts from scanner, protocol, or anatomical variations, leading to performance degradation in out-of-distribution (OOD) scenarios. In this work, we propose a Cross-Distribution Diffusion Priors-Driven Iterative Reconstruction (CDPIR) framework to tackle the OOD problem in SVCT. CDPIR integrates cross-distribution diffusion priors, derived from a Scalable Interpolant Transformer (SiT), with model-based iterative reconstruction methods. Specifically, we train a SiT backbone, an extension of the Diffusion Transformer (DiT) architecture, to establish a unified stochastic interpolant framework, leveraging Classifier-Free Guidance (CFG) across multiple datasets. By randomly dropping the conditioning with a null embedding during training, the model learns both domain-specific and domain-invariant priors, enhancing generalizability. During sampling, the globally sensitive transformer-based diffusion model exploits the cross-distribution prior within the unified stochastic interpolant framework, enabling flexible and stable control over multi-distribution-to-noise interpolation paths and decoupled sampling strategies, thereby improving adaptation to OOD reconstruction. By alternating between data fidelity and sampling updates, our model achieves state-of-the-art performance with superior detail preservation in SVCT reconstructions. Extensive experiments demonstrate that CDPIR significantly outperforms existing approaches, particularly under OOD conditions, highlighting its robustness and potential clinical value in challenging imaging scenarios.

eess.IV↗
arXiv2026

Degradation-Robust Fusion: An Efficient Degradation-Aware Diffusion Framework for Multimodal Image Fusion in Arbitrary Degradation Scenarios

Complex degradations like noise, blur, and low resolution are typical challenges in real world image fusion tasks, limiting the performance and practicality of existing methods. End to end neural network based approaches are generally simple to design and highly efficient in inference, but their black-box nature leads to limited interpretability. Diffusion based methods alleviate this to some extent by providing powerful generative priors and a more structured inference process. However, they are trained to learn a single domain target distribution, whereas fusion lacks natural fused data and relies on modeling complementary information from multiple sources, making diffusion hard to apply directly in practice. To address these challenges, this paper proposes an efficient degradation aware diffusion framework for image fusion under arbitrary degradation scenarios. Specifically, instead of explicitly predicting noise as in conventional diffusion models, our method performs implicit denoising by directly regressing the fused image, enabling flexible adaptation to diverse fusion tasks under complex degradations with limited steps. Moreover, we design a joint observation model correction mechanism that simultaneously imposes degradation and fusion constraints during sampling to ensure high reconstruction accuracy. Experiments on diverse fusion tasks and degradation configurations demonstrate the superiority of the proposed method under complex degradation scenarios.

cs.CV↗
arXiv2026

LungCURE: Benchmarking Multimodal Real-World Clinical Reasoning for Precision Lung Cancer Diagnosis and Treatment

Lung cancer clinical decision support demands precise reasoning across complex, multi-stage oncological workflows. Existing multimodal large language models (MLLMs) fail to handle guideline-constrained staging and treatment reasoning. We formalize three oncological precision treatment (OPT) tasks for lung cancer, spanning TNM staging, treatment recommendation, and end-to-end clinical decision support. We introduce LungCURE, the first standardized multimodal benchmark built from 1,000 real-world, clinician-labeled cases across more than 10 hospitals. We further propose LCAgent, a multi-agent framework that ensures guideline-compliant lung cancer clinical decision-making by suppressing cascading reasoning errors across the clinical pathway. Experiments reveal large differences across various large language models (LLMs) in their capabilities for complex medical reasoning, when given precise treatment requirements. We further verify that LCAgent, as a simple yet effective plugin, enhances the reasoning performance of LLMs in real-world medical scenarios.

cs.MM↗
arXiv2026

HAFixAgent: History-Aware Program Repair Agent

Automated program repair (APR) has recently shifted toward large language models and agent-based systems, yet most systems rely on local snapshot context, overlooking repository history. Prior work shows that repository history helps repair single-line bugs, since the last commit touching the buggy line is often the bug-introducing one. In this paper, we investigate whether repository history can also improve agentic APR systems at scale, especially for complex multi-hunk bugs. We present HAFixAgent, a History-Aware Bug-Fixing Agent that injects blame-derived repository heuristics into its repair loop. A preliminary study on 854 Defects4J (Java) and 501 BugsInPy (Python) bugs motivates our design, showing that bug-relevant history is widely available across both benchmarks. Using the same LLM (DeepSeek-V3.2-Exp) for all experiments, including replicated baselines, we show: (1) Effectiveness: HAFixAgent outperforms RepairAgent (+56.6\%) and BIRCH-feedback (+47.1\%) on Defects4J. Historical context further improves repair by +4.4\% on Defects4J and +38.6\% on BugsInPy, especially on single-file multi-hunk (SFMH) bugs. (2) Robustness: under noisy fault localization (+1/+3/+5 line shifts), history provides increasing resilience, maintaining 40 to 56\% success on SFMH bugs where the non-history baseline collapses to 0\%. (3) Efficiency: history does not significantly increase agent steps or token costs on either benchmark.

cs.SE↗
arXiv2026

Clinical Metadata Guided Limited-Angle CT Image Reconstruction

Limited-angle computed tomography (LACT) offers improved temporal resolution and reduced radiation dose for cardiac imaging, but suffers from severe artifacts due to truncated projections. To address the ill-posedness of LACT reconstruction, we propose a two-stage diffusion framework guided by structured clinical metadata. In the first stage, a transformer-based diffusion model conditioned exclusively on metadata, including acquisition parameters, patient demographics, and diagnostic impressions, generates coarse anatomical priors from noise. The second stage further refines the images by integrating both the coarse prior and metadata to produce high-fidelity results. Physics-based data consistency is enforced at each sampling step in both stages using an Alternating Direction Method of Multipliers module, ensuring alignment with the measured projections. Extensive experiments on both synthetic and real cardiac CT datasets demonstrate that incorporating metadata significantly improves reconstruction fidelity, particularly under severe angular truncation. Compared to existing metadata-free baselines, our method achieves superior performance in SSIM, PSNR, nMI, and PCC. Ablation studies confirm that different types of metadata contribute complementary benefits, particularly diagnostic and demographic priors under limited-angle conditions. These findings highlight the dual role of clinical metadata in improving both reconstruction quality and efficiency, supporting their integration into future metadata-guided medical imaging frameworks.

cs.CV↗
arXiv2026

HYDRA: Unifying Multi-modal Generation and Understanding via Representation-Harmonized Tokenization

Unified Multimodal Models struggle to bridge the fundamental gap between the abstract representations needed for visual understanding and the detailed primitives required for generation. Existing approaches typically compromise by employing decoupled encoders, stacking representation encoder atop VAEs, or utilizing discrete quantization. However, these methods often disrupt information coherence and lead to optimization conflicts. To this end, we introduce HYDRA-TOK, a representation-harmonized pure ViT in the insight that visual modeling should evolve from generation to understanding. HYDRA-TOK reformulates the standard backbone into a progressive learner that transitions from a Gen-ViT, which captures structure-preserving primitives, to a Sem-ViT for semantic encoding. Crucially, this transition is mediated by a Generation-Semantic Bottleneck (GSB), which compresses features into a low-dimensional space to filter noise for robust synthesis, then restores dimensionality to empower complex semantic comprehension. Built upon this foundation, we present HYDRA, a native unified framework integrating perception and generation within a single parameter space. Extensive experiments establish HYDRA as a new state-of-the-art. It sets a benchmark in visual reconstruction (rFID 0.08) and achieves top-tier generation performance on GenEval (0.86), DPG-Bench (86.4), and WISE (0.53), while simultaneously outperforming previous native UMMs by an average of 10.0 points across eight challenging understanding benchmarks.

cs.CV↗
arXiv2026

TumorChain: Interleaved Multimodal Chain-of-Thought Reasoning for Traceable Clinical Tumor Analysis

Accurate tumor analysis is central to clinical radiology and precision oncology, where early detection, reliable lesion characterization, and pathology-level risk assessment guide diagnosis and treatment planning. Chain-of-Thought (CoT) reasoning is particularly important in this setting because it enables step-by-step interpretation from imaging findings to clinical impressions and pathology conclusions, improving traceability and reducing diagnostic errors. Here, we target the clinical tumor analysis task and build a large-scale benchmark that operationalizes a multimodal reasoning pipeline, spanning findings, impressions, and pathology predictions. We curate TumorCoT, a large-scale dataset of 1.5M CoT-labeled VQA instructions paired with 3D CT scans, with step-aligned rationales and cross-modal alignments along the trajectory from findings to impression to pathology, enabling evaluation of both answer accuracy and reasoning consistency. We further propose TumorChain, a multimodal interleaved reasoning framework that tightly couples 3D imaging encoders, clinical text understanding, and organ-level vision-language alignment. Through cross-modal alignment and iterative interleaved causal reasoning, TumorChain grounds visual evidence, aggregates conclusions, and issues pathology predictions after multiple rounds of self-refinement, improving traceability and reducing hallucination risk. Experiments show consistent improvements over strong baselines in lesion detection, impression generation, and pathology classification, and demonstrate strong generalization on the DeepTumorVQA benchmark. These results highlight the potential of multimodal reasoning for reliable and interpretable tumor analysis in clinical practice. Detailed information about our project can be found on our project homepage at https://github.com/ZJU4HealthCare/TumorChain.

cs.CV↗
arXiv2026

Adiabatic Elimination in Relativistic Stochastic Mechanics

We investigate the adiabatic elimination of fast variables in relativistic stochastic mechanics, which is analyzed by using the equation of motion and the distribution function, with relativistic corrections explicitly derived. A new dimensionless parameter is introduced to characterize the timescale. The adiabatic elimination is compared with the path integral coarse graining, which is more general yet computationally demanding.

cond-mat.stat-mech↗
arXiv2026

Bending the Scaling Law Curve in Large-Scale Recommendation Systems

Learning from user interaction history through sequential models has become a cornerstone of large-scale recommender systems. Recent advances in large language models have revealed promising scaling laws, sparking a surge of research into long-sequence modeling and deeper architectures for recommendation tasks. However, many recent approaches rely heavily on cross-attention mechanisms to address the quadratic computational bottleneck in sequential modeling, which can limit the representational power gained from self-attention. We present ULTRA-HSTU, a novel sequential recommendation model developed through end-to-end model and system co-design. By innovating in the design of input sequences, sparse attention mechanisms, and model topology, ULTRA-HSTU achieves substantial improvements in both model quality and efficiency. Comprehensive benchmarking demonstrates that ULTRA-HSTU achieves remarkable scaling efficiency gains -- over 5x faster training scaling and 21x faster inference scaling compared to conventional models -- while delivering superior recommendation quality. Our solution is fully deployed at scale, serving billions of users daily and driving significant 4% to 8% consumption and engagement improvements in real-world production environments.

cs.IR↗
arXiv2026

From Global Radiomics to Parametric Maps: A Unified Workflow Fusing Radiomics and Deep Learning for PDAC Detection

Radiomics and deep learning both offer powerful tools for quantitative medical imaging, but most existing fusion approaches only leverage global radiomic features and overlook the complementary value of spatially resolved radiomic parametric maps. We propose a unified framework that first selects discriminative radiomic features and then injects them into a radiomics-enhanced nnUNet at both the global and voxel levels for pancreatic ductal adenocarcinoma (PDAC) detection. On the PANORAMA dataset, our method achieved AUC = 0.96 and AP = 0.84 in cross-validation. On an external in-house cohort, it achieved AUC = 0.95 and AP = 0.78, outperforming the baseline nnUNet; it also ranked second in the PANORAMA Grand Challenge. This demonstrates that handcrafted radiomics, when injected at both global and voxel levels, provide complementary signals to deep learning models for PDAC detection. Our code can be found at https://github.com/briandzt/dl-pdac-radiomics-global-n-paramaps

eess.IV↗
arXiv2026

HAFix: History-Augmented Large Language Models for Bug Fixing

Recent studies have explored the performance of Large Language Models (LLMs) on various Software Engineering (SE) tasks, such as code generation and bug fixing. However, these approaches typically rely on the context data from the current snapshot of the project, overlooking the potential of rich historical data residing in real-world software repositories. Additionally, the impact of prompt styles on LLM performance for SE tasks within a historical context remains underexplored. To address these gaps, we propose HAFix, which stands for History-Augmented LLMs on Bug Fixing, a novel approach that leverages seven individual historical heuristics associated with bugs and aggregates the results of these heuristics (HAFix-Agg) to enhance LLMs' bug-fixing capabilities. To empirically evaluate HAFix, we employ three Code LLMs (i.e., Code Llama, DeepSeek-Coder and DeepSeek-Coder-V2-Lite models) on 51 single-line Python bugs from BugsInPy and 116 single-line Java bugs from Defects4J. Our evaluation demonstrates that multiple HAFix heuristics achieve statistically significant improvements compared to a non-historical baseline inspired by GitHub Copilot. Furthermore, the aggregated HAFix variant HAFix-Agg achieves substantial improvements by combining the complementary strengths of individual heuristics, increasing bug-fixing rates by an average of 45.05% on BugsInPy and 49.92% on Defects4J relative to the corresponding baseline. Moreover, within the context of historical heuristics, we identify the Instruction prompt style as the most effective template compared to the InstructionLabel and InstructionMask for LLMs in bug fixing. Finally, we evaluate the cost of HAFix in terms of inference time and token usage, and provide a pragmatic trade-off analysis of the cost and bug-fixing performance, offering valuable insights for the practical deployment of our approach in real-world scenarios.

cs.SE↗
arXiv2026

The road of quantum entanglement: from Einstein to 2022 Nobel Prize in Physics

We explain the achievements that were awarded 2022 Nobel Prize in Physics, as well as the preceding and the later developments. The main notions and historic cornerstones of Bell inequalities, the related researches on quantum entanglement are reviewed, and the key physical ideas are emphasized. Among the early work, C. S. Wu's contributions using polarization-entangled photons from electron-positron annihilation are introduced.

physics.hist-ph↗
arXiv2026

Multi-Level Safety Continual Projection for Fine-Tuned Large Language Models without Retraining

While fine-tuning services drive the rapid expansion of task capabilities in large language models (LLMs), they are often accompanied by the degradation and reorganization of safety-aligned representations, making models more prone to deviating from human preferences and exposing them to emerging jailbreak risks. Existing post-fine-tuning defense methods predominantly rely on single-scale safety correction mechanisms, which struggle to achieve a robust balance among safety, model utility, and continual adaptability. We propose Multi-Level Safety Continual Projection (MSCP), a training-free post-fine-tuning safety enhancement method that implicitly aligns global and localized safety activations through coordinated multi-level representations to isolate sparse neuron clusters governing safety-sensitive behaviors. It then applies composable safety-direction projections without retraining, effectively suppressing harmful outputs under minimal parameter perturbations while preserving task performance and improving alignment with human preferences. Extensive experiments across multiple fine-tuned LLM models demonstrate that our method significantly reduce harmfulness scores and attack success rates with minimal parameter modifications, while preserving the model's utility. Furthermore, we introduce a task-specific, multi-dimensional heterogeneous safety activation clustering mechanism that enables continual defense and generalization capability against unforeseen emerging safety concerns.

cs.LG↗
arXiv2026

Beyond Parameter Finetuning: Test-Time Representation Refinement for Node Classification

Graph Neural Networks frequently exhibit significant performance degradation in the out-of-distribution test scenario. While test-time training (TTT) offers a promising solution, existing Parameter Finetuning (PaFT) paradigm suffer from catastrophic forgetting, hindering their real-world applicability. We propose TTReFT, a novel Test-Time Representation FineTuning framework that transitions the adaptation target from model parameters to latent representations. Specifically, TTReFT achieves this through three key innovations: (1) uncertainty-guided node selection for specific interventions, (2) low-rank representation interventions that preserve pre-trained knowledge, and (3) an intervention-aware masked autoencoder that dynamically adjust masking strategy to accommodate the node selection scheme. Theoretically, we establish guarantees for TTReFT in OOD settings. Empirically, extensive experiments across five benchmark datasets demonstrate that TTReFT achieves consistent and superior performance. Our work establishes representation finetuning as a new paradigm for graph TTT, offering both theoretical grounding and immediate practical utility for real-world deployment.

cs.LG↗
arXiv2026

OmegaUse: Building a General-Purpose GUI Agent for Autonomous Task Execution

Graphical User Interface (GUI) agents show great potential for enabling foundation models to complete real-world tasks, revolutionizing human-computer interaction and improving human productivity. In this report, we present OmegaUse, a general-purpose GUI agent model for autonomous task execution on both mobile and desktop platforms, supporting computer-use and phone-use scenarios. Building an effective GUI agent model relies on two factors: (1) high-quality data and (2) effective training methods. To address these, we introduce a carefully engineered data-construction pipeline and a decoupled training paradigm. For data construction, we leverage rigorously curated open-source datasets and introduce a novel automated synthesis framework that integrates bottom-up autonomous exploration with top-down taxonomy-guided generation to create high-fidelity synthetic data. For training, to better leverage these data, we adopt a two-stage strategy: Supervised Fine-Tuning (SFT) to establish fundamental interaction syntax, followed by Group Relative Policy Optimization (GRPO) to improve spatial grounding and sequential planning. To balance computational efficiency with agentic reasoning capacity, OmegaUse is built on a Mixture-of-Experts (MoE) backbone. To evaluate cross-terminal capabilities in an offline setting, we introduce OS-Nav, a benchmark suite spanning multiple operating systems: ChiM-Nav, targeting Chinese Android mobile environments, and Ubu-Nav, focusing on routine desktop interactions on Ubuntu. Extensive experiments show that OmegaUse is highly competitive across established GUI benchmarks, achieving a state-of-the-art (SOTA) score of 96.3% on ScreenSpot-V2 and a leading 79.1% step success rate on AndroidControl. OmegaUse also performs strongly on OS-Nav, reaching 74.24% step success on ChiM-Nav and 55.9% average success on Ubu-Nav.

cs.AI↗