arXiv subjects

Yu Shrike Zhang

Publications and source records attributed to Yu Shrike Zhang.

3 recordsLinked to original sources

arXiv2024

Mutual Information Assisted Ensemble Recommender System for Identifying Critical Risk Factors in Healthcare Prognosis

Purpose: Health recommenders act as important decision support systems, aiding patients and medical professionals in taking actions that lead to patients' well-being. These systems extract the information which may be of particular relevance to the end-user, helping them in making appropriate decisions. The present study proposes a feature recommender, as a part of a disease management system, that identifies and recommends the most important risk factors for an illness. Methods: A novel mutual information and ensemble-based feature ranking approach for identifying critical risk factors in healthcare prognosis is proposed. Results: To establish the effectiveness of the proposed method, experiments have been conducted on four benchmark datasets of diverse diseases (clear cell renal cell carcinoma (ccRCC), chronic kidney disease, Indian liver patient, and cervical cancer risk factors). The performance of the proposed recommender is compared with four state-of-the-art methods using recommender systems' performance metrics like average precision@K, precision@K, recall@K, F1@K, reciprocal rank@K. The method is able to recommend all relevant critical risk factors for ccRCC. It also attains a higher accuracy (96.6% and 98.6% using support vector machine and neural network, respectively) for ccRCC staging with a reduced feature set as compared to existing methods. Moreover, the top two features recommended using the proposed method with ccRCC, viz. size of tumor and metastasis status, are medically validated from the existing TNM system. Results are also found to be superior for the other three datasets. Conclusion: The proposed recommender can identify and recommend risk factors that have the most discriminating power for detecting diseases.

cs.LG↗

arXiv2021

Deep image prior for undersampling high-speed photoacoustic microscopy

Photoacoustic microscopy (PAM) is an emerging imaging method combining light and sound. However, limited by the laser's repetition rate, state-of-the-art high-speed PAM technology often sacrifices spatial sampling density (i.e., undersampling) for increased imaging speed over a large field-of-view. Deep learning (DL) methods have recently been used to improve sparsely sampled PAM images; however, these methods often require time-consuming pre-training and large training dataset with ground truth. Here, we propose the use of deep image prior (DIP) to improve the image quality of undersampled PAM images. Unlike other DL approaches, DIP requires neither pre-training nor fully-sampled ground truth, enabling its flexible and fast implementation on various imaging targets. Our results have demonstrated substantial improvement in PAM images with as few as 1.4$\%$ of the fully sampled pixels on high-speed PAM. Our approach outperforms interpolation, is competitive with pre-trained supervised DL method, and is readily translated to other high-speed, undersampling imaging modalities.

eess.IV↗

arXiv2021

Towards the development of human immune-system-on-a-chip platforms

Organ-on-a-chip (OoCs) platforms could revolutionize drug discovery and might ultimately become essential tools for precision therapy. Although many single-organ and interconnected systems have been described, the immune system has been comparatively neglected, despite its pervasive role in the body and the trend towards newer therapeutic products (i.e., complex biologics, nanoparticles, immune checkpoint inhibitors, and engineered T cells) that often cause, or are based on, immune reactions. In this review, we recapitulate some distinctive features of the immune system before reviewing microfluidic devices that mimic lymphoid organs or other organs and/or tissues with an integrated immune system component.

physics.bio-ph↗