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Yu-Ting Lin

Publications and source records attributed to Yu-Ting Lin.

17 recordsLinked to original sources

PhantomSkill: Malicious Code Injection in Agent Skill Ecosystems

Agent skills allow LLM-based coding agents to acquire domain-specific capabilities from third-party packages, but they also introduce a new supply-chain attack surface. We present PhantomSkill, an attack framework that hides malicious behavior in a skill's auxiliary resources rather than in its textual description. Its core technique, VulMask, rewrites overt malicious scripts into vulnerability-shaped implementations whose malicious behavior is activated only under attacker-controlled trigger conditions. This design shifts the visible signal from explicit malicious intent to ordinary-looking insecure code. Across representative host skills, attack goals, coding agents, generation models, and automated reviewers, VulMask preserves benign utility while reducing warning and malware-level detection compared with overt malicious scripts. Our results show that skill ecosystems require resource-level vetting, execution-time containment, and security policies that treat exploitable vulnerabilities in agent skills as potential malicious payloads.

cs.CR

Sidorenko-Inspired Pessimistic Estimation

Recently, Abo Khamis et al. showed how to upper bound the size of a join of multiple tables, a problem essential to query optimization in database theory. They unified earlier works by the following information-theoretical framework. 1. Let $(X_1,..., X_n)$ be a row selected from the join uniformly at random. 2. The size of the join is now $\exp(H(X_1,..., X_n))$. 3. To upper bound $H(X_1,..., X_n)$, break it into several $\textit{local entropies}$, such as $H(X_1)$, $H(X_2, X_3)$, and $H(X_4|X_5)$, using Shannon-type inequalities. 4. Upper bound local entropies using statistics of the tables being joined. The statistics Abo Khamis et al. considered are the counts of graph homomorphisms from stars to the tables. In a follow-up work, we generalized stars to bi-stars. In this paper, we generalize bi-stars to caterpillars, an even larger class of graphs inspired by Sidorenko's conjecture. Simulations show that, while Abo Khamis et al.'s star bound overestimates the join size by $m$, our bi-star bound overestimates by about $m^{3/4}$, and this paper's new caterpillar bound overestimates by about $m^{3/5}$. These exponents are obtained by log-log regressions with R-square $> 0.98$. All homomorphisms are counted in time linear in the size of the tables being joined.

cs.IT

Extracting Consumer Insight from Text: A Large Language Model Approach to Emotion and Evaluation Measurement

Accurately measuring consumer emotions and evaluations from unstructured text remains a core challenge for marketing research and practice. This study introduces the Linguistic eXtractor (LX), a fine-tuned, large language model trained on consumer-authored text that also has been labeled with consumers' self-reported ratings of 16 consumption-related emotions and four evaluation constructs: trust, commitment, recommendation, and sentiment. LX consistently outperforms leading models, including GPT-4 Turbo, RoBERTa, and DeepSeek, achieving 81% macro-F1 accuracy on open-ended survey responses and greater than 95% accuracy on third-party-annotated Amazon and Yelp reviews. An application of LX to online retail data, using seemingly unrelated regression, affirms that review-expressed emotions predict product ratings, which in turn predict purchase behavior. Most emotional effects are mediated by product ratings, though some emotions, such as discontent and peacefulness, influence purchase directly, indicating that emotional tone provides meaningful signals beyond star ratings. To support its use, a no-code, cost-free, LX web application is available, enabling scalable analyses of consumer-authored text. In establishing a new methodological foundation for consumer perception measurement, this research demonstrates new methods for leveraging large language models to advance marketing research and practice, thereby achieving validated detection of marketing constructs from consumer data.

cs.CL

Block Length Gain for Nanopore Channels

DNA is an attractive candidate for data storage. Its millennial durability and nanometer scale offer exceptional data density and longevity. Its relevance to medical applications also drives advances in DNA-related biotechnology. To protect our data against errors, a straightforward approach uses one error-correcting code per DNA strand, with a Reed--Solomon code protecting the collection of strands. A downside is that current technology can only synthesize strands 200--300 nucleotides long. At this block length, the inner code rate suffers a significant finite-length penalty, making its effective capacity hard to characterize. Last year, we proposed $\textit{Geno-Weaving}$ in a JSAIT publication. The idea is to protect the same position across multiple strands using one code; this provably achieves capacity against substitution errors. In this paper, we extend the idea to combat deletion errors and show two more advantages of Geno-Weaving: (1) Because the number of strands is 3--4 orders of magnitude larger than the strand length, the finite-length penalty vanishes. (2) At realistic deletion rates $0.1\%$--$10\%$, Geno-Weaving designed for BSCs works well empirically, bypassing the need to tailor the design for deletion channels.

cs.IT

Ambidextrous Degree Sequence Bounds for Pessimistic Cardinality Estimation

In a large database system, upper-bounding the cardinality of a join query is a crucial task called $\textit{pessimistic cardinality estimation}$. Recently, Abo Khamis, Nakos, Olteanu, and Suciu unified related works into the following dexterous framework. Step 1: Let $(X_1, \dotsc, X_n)$ be a random row of the join, equating $H(X_1, \dotsc, X_n)$ to the log of the join cardinality. Step 2: Upper-bound $H(X_1, \dotsc, X_n)$ using Shannon-type inequalities such as $H(X, Y, Z) \le H(X) + H(Y|X) + H(Z|Y)$. Step 3: Upper-bound $H(X_i) + p H(X_j | X_i)$ using the $p$-norm of the degree sequence of the underlying graph of a relation. While old bound in step 3 count "claws $\in$" in the underlying graph, we proposed $\textit{ambidextrous}$ bounds that count "claw pairs ${\ni}\!{-}\!{\in}$". The new bounds are provably not looser and empirically tighter: they overestimate by $x^{3/4}$ times when the old bounds overestimate by $x$ times. An example is counting friend triples in the $\texttt{com-Youtube}$ dataset, the best dexterous bound is $1.2 \cdot 10^9$, the best ambidextrous bound is $5.1 \cdot 10^8$, and the actual cardinality is $1.8 \cdot 10^7$.

cs.DB

Gaze and Glow: Exploring Editing Processes on Social Media through Interactive Exhibition

We present Gaze and Glow, an interactive installation that reveals the often-invisible efforts of social media editing. Through narrative personas, experimental videos, and sensor-based interactions, the installation explores how audience attention shapes users' editing practices and emotional experiences. Deployed in a two-month public exhibition, Gaze and Glow engaged viewers and elicited responses. Reflexive thematic analysis of audience feedback highlights how making editing visible prompts new reflections on authenticity, agency, and performativity. We discuss implications for designing interactive systems that support selective memory, user-controlled visibility, and critical engagement with everyday digital self-presentation.

cs.HC

Variability of morphology in beat-to-beat photoplethysmographic waveform quantified with unsupervised wave-shape manifold learning for clinical assessment

We investigated the beat-to-beat fluctuation of the photoplethysmography (PPG) waveform. The motivation is that morphology variability extracted from the arterial blood pressure (ABP) has been found to correlate with baseline condition and short-term surgical outcome of the patients undergoing liver transplant surgery. Numerous interactions of physiological mechanisms regulating the cardiovascular system could underlie the variability of morphology. We used the unsupervised manifold learning algorithm, Dynamic Diffusion Map, to quantify the multivariate waveform morphological variation. Due to the physical principle of light absorption, PPG waveform signals are more susceptible to artifact and are nominally used only for visual inspection of data quality in clinical medical environment. But on the other hand, the noninvasive, easy-to-use nature of PPG grants a wider range of biomedical application, which inspired us to investigate the variability of morphology information from PPG waveform signal. We developed data analysis techniques to improve the performance and validated with the real-life clinical database.

q-bio.QM

Arterial blood pressure waveform in liver transplant surgery possesses variability of morphology reflecting recipients' acuity and predicting short term outcomes

Background: We investigated clinical information underneath the beat-to-beat fluctuation of the arterial blood pressure (ABP) waveform morphology. We proposed the Dynamical Diffusion Map algorithm (DDMap) to quantify the variability of morphology. The underlying physiology could be the compensatory mechanisms involving complex interactions between various physiological mechanisms to regulate the cardiovascular system. As a liver transplant surgery contains distinct periods, we investigated its clinical behavior in different surgical steps. Methods: Our study used DDmap algorithm, based on unsupervised manifold learning, to obtain a quantitative index for the beat-to-beat variability of morphology. We examined the correlation between the variability of ABP morphology and disease acuity as indicated by Model for End-Stage Liver Disease (MELD) scores, the postoperative laboratory data, and 4 early allograft failure (EAF) scores. Results: Among the 85 enrolled patients, the variability of morphology obtained during the presurgical phase was best correlated with MELD-Na scores. The neohepatic phase variability of morphology was associated with EAF scores as well as postoperative bilirubin levels, international normalized ratio, aspartate aminotransferase levels, and platelet count. Furthermore, variability of morphology presents more associations with the above clinical conditions than the common BP measures and their BP variability indices. Conclusions: The variability of morphology obtained during the presurgical phase is indicative of patient acuity, whereas those during the neohepatic phase are indicative of short-term surgical outcomes.

q-bio.QM

Unsupervised Ensembling of Multiple Software Sensors with Phase Synchronization: A Robust Approach For Electrocardiogram-derived Respiration

Objective: We aimed to fuse the outputs of different electrocardiogram-derived respiration (EDR) algorithms to create one EDR signal that is of higher quality. Methods: We viewed each EDR algorithm as a software sensor that recorded breathing activity from a different vantage point, identified high-quality software sensors based on the respiratory signal quality index, aligned the highest-quality EDRs with a phase synchronization technique based on the graph connection Laplacian, and finally fused those aligned, high-quality EDRs. We refer to the output as the sync-ensembled EDR signal. The proposed algorithm was evaluated on two large-scale databases of whole-night polysomnograms. We evaluated the performance of the proposed algorithm using three respiratory signals recorded from different hardware sensors, and compared it with other existing EDR algorithms. A sensitivity analysis was carried out for a total of five cases: fusion by taking the mean of EDR signals, and the four cases of EDR signal alignment without and with synchronization and without and with signal quality selection. Results: The sync-ensembled EDR algorithm outperforms existing EDR algorithms when evaluated by the synchronized correlation ({\gamma}-score), optimal transport (OT) distance, and estimated average respiratory rate (EARR) score, all with statistical significance. The sensitivity analysis shows that the signal quality selection and EDR signal alignment are both critical for the performance, both with statistical significance. Conclusion: The sync-ensembled EDR provides robust respiratory information from electrocardiogram. Significance: Phase synchronization is not only theoretically rigorous but also practical to design a robust EDR.

eess.SP

Novel imaging revealing inner dynamics for cardiovascular waveform analysis via unsupervised manifold learning

Cardiovascular waveforms contain information for clinical diagnosis. By "learning" and organizing the subtle change of waveform morphology from large amounts of raw waveform data, unsupervised manifold learning helps delineate a high-dimensional structure and display it as a novel three-dimensional (3D) image. We investigate the electrocardiography (ECG) waveform for ischemic heart disease and arterial blood pressure (ABP) waveform in dynamic vasoactive episodes. We model each beat or pulse to be a point lying on a manifold, like a surface, and use the diffusion map (DMap) to establish the relationship among those pulses. For ECG datasets, first we analyzed the non-ST-elevation ECG waveform distribution from unstable angina to healthy control, and we investigated intraoperative ST-elevation ECG waveforms to show the dynamic ECG waveform changes. For ABP datasets, we analyzed waveforms collected under endotracheal intubation and administration of vasodilator. To quantify the dynamic separation, we applied the support vector machine (SVM) analysis and the trajectory analysis. For the non-ST-elevation ECG, a hierarchical tree structure comprising consecutive ECG waveforms spanning from unstable angina to healthy control is presented in the 3D image (accuracy=97.6%, macro-F1=96.1%). The DMap helps quantify and visualize the evolving direction of intraoperative ST-elevation myocardial episode in a 1-hour period (accuracy=97.58%, macro-F1=96.06%). The ABP waveform analysis of Nicardipine administration shows inter-individual difference (accuracy=95.01%, macro-F1=96.9%) and their common directions from intra-individual moving trajectories. The dynamic change of the ABP waveform during endotracheal intubation shows a loop-like trajectory structure, which can be further divided using the knowledge obtained from Nicardipine. The 3D images provide clues of underneath physiological mechanisms.

q-bio.QM

Wave-shape oscillatory model for nonstationary periodic time series analysis

The oscillations observed in many time series, particularly in biomedicine, exhibit morphological variations over time. These morphological variations are caused by intrinsic or extrinsic changes to the state of the generating system, henceforth referred to as dynamics. To model these time series (including and specifically pathophysiological ones) and estimate the underlying dynamics, we provide a novel wave-shape oscillatory model. In this model, time-dependent variations in cycle shape occur along a manifold called the wave-shape manifold. To estimate the wave-shape manifold associated with an oscillatory time series, study the dynamics, and visualize the time-dependent changes along the wave-shape manifold, we propose a novel algorithm coined Dynamic Diffusion map (DDmap) by applying the well-established diffusion maps (DM) algorithm to the set of all observed oscillations. We provide a theoretical guarantee on the dynamical information recovered by the DDmap algorithm under the proposed model. Applying the proposed model and algorithm to arterial blood pressure (ABP) signals recorded during general anesthesia leads to the extraction of nociception information. Applying the wave-shape oscillatory model and the DDmap algorithm to cardiac cycles in the electrocardiogram (ECG) leads to ectopy detection and a new ECG-derived respiratory signal, even when the subject has atrial fibrillation.

stat.AP

Differentiation of skin incision and laparoscopic trocar insertion via quantifying transient bradycardia measured by electrocardiogram

Background. Most surgical procedures involve structures deeper than the skin. However, the difference in surgical noxious stimulation between skin incision and laparoscopic trocar insertion is unknown. By analyzing instantaneous heart rate (IHR) calculated from the electrocardiogram, in particular the transient bradycardia in response to surgical stimuli, this study investigates surgical noxious stimuli arising from skin incision and laparoscopic trocar insertion. Methods. Thirty-five patients undergoing laparoscopic cholecystectomy were enrolled in this prospective observational study. Sequential surgical steps including umbilical skin incision (11 mm), umbilical trocar insertion (11 mm), xiphoid skin incision (5 mm), xiphoid trocar insertion (5 mm), subcostal skin incision (3 mm), and subcostal trocar insertion (3 mm) were investigated. IHR was derived from electrocardiography and calculated by the modern time-varying power spectrum. Similar to the classical heart rate variability analysis, the time-varying low frequency power (tvLF), time-varying high frequency power (tvHF), and tvLF-to-tvHF ratio (tvLHR) were calculated. Prediction probability (PK) analysis and global pointwise F-test were used to compare the performance between indices and the heart rate readings from the patient monitor. Results. Analysis of IHR showed that surgical stimulus elicits a transient bradycardia, followed by the increase of heart rate. Transient bradycardia is more significant in trocar insertion than skin incision. The IHR change quantifies differential responses to different surgical intensity. Serial PK analysis demonstrates de-sensitization in skin incision, but not in laparoscopic trocar insertion. Conclusions. Quantitative indices present the transient bradycardia introduced by noxious stimulation. The results indicate different effects between skin incision and trocar insertion.

q-bio.QM

Unexpected sawtooth artifact in beat-to-beat pulse transit time measured from patient monitor data

Object: It is increasingly popular to collect as much data as possible in the hospital setting from clinical monitors for research purposes. However, in this setup the data calibration issue is often not discussed and, rather, implicitly assumed, while the clinical monitors might not be designed for the data analysis purpose. We hypothesize that this calibration issue for a secondary analysis may become an important source of artifacts in patient monitor data. We test an off-the-shelf integrated photoplethysmography (PPG) and electrocardiogram (ECG) monitoring device for its ability to yield a reliable pulse transit time (PTT) signal. Approach: This is a retrospective clinical study using two databases: one containing 35 subjects who underwent laparoscopic cholecystectomy, another containing 22 subjects who underwent spontaneous breathing test in the intensive care unit. All data sets include recordings of PPG and ECG using a commonly deployed patient monitor. We calculated the PTT signal offline. Main Results: We report a novel constant oscillatory pattern in the PTT signal and identify this pattern as a sawtooth artifact. We apply an approach based on the de-shape method to visualize, quantify and validate this sawtooth artifact. Significance: The PPG and ECG signals not designed for the PTT evaluation may contain unwanted artifacts. The PTT signal should be calibrated before analysis to avoid erroneous interpretation of its physiological meaning.

q-bio.QM

When interpolation-induced reflection artifact meets time-frequency analysis

While extracting the temporal dynamical features based on the time-frequency analyses, like the reassignment and synchrosqueezing transform, attracts more and more interest in bio-medical data analysis, we should be careful about artifacts generated by interpolation schemes, in particular when the sampling rate is not significantly higher than the frequency of the oscillatory component we are interested in. In this study, we formulate the problem called the reflection effect and provide a theoretical justification of the statement. We also show examples in the anesthetic depth analysis with clear but undesirable artifacts. The results show that the artifact associated with the reflection effect exists not only theoretically but practically. Its influence is pronounced when we apply the time-frequency analyses to extract the time-varying dynamics hidden inside the signal. In conclusion, we have to carefully deal with the artifact associated with the reflection effect by choosing a proper interpolation scheme.

stat.AP

The Modeling and Quantification of Rhythmic to Non-rhythmic Phenomenon in Electrocardiography during Anesthesia

Variations of instantaneous heart rate appears regularly oscillatory in deeper levels of anesthesia and less regular in lighter levels of anesthesia. It is impossible to observe this "rhythmic-to-non-rhythmic" phenomenon from raw electrocardiography waveform in current standard anesthesia monitors. To explore the possible clinical value, I proposed the adaptive harmonic model, which fits the descriptive property in physiology, and provides adequate mathematical conditions for the quantification. Based on the adaptive harmonic model, multitaper Synchrosqueezing transform was used to provide time-varying power spectrum, which facilitates to compute the quantitative index: "Non-rhythmic-to-Rhythmic Ratio" index (NRR index). I then used a clinical database to analyze the behavior of NRR index and compare it with other standard indices of anesthetic depth. The positive statistical results suggest that NRR index provides addition clinical information regarding motor reaction, which aligns with current standard tools. Furthermore, the ability to indicates the noxious stimulation is an additional finding. Lastly, I have proposed an real-time interpolation scheme to contribute my study further as a clinical application.

q-bio.NC

Real-time dynamics acquisition from irregular samples -- with application to anesthesia evaluation

The first objective of this paper is to introduce a unified approach to the D/A conversion, a real-time algorithm referred to as {\it blending operator}, based on spline functions of arbitrarily desired order, to interpolate the irregular data samples, while preserving all polynomials of the same spline order, with assured maximum order of approximation. This helps remove the two main obstacles for adapting the recently proposed time-frequency analysis technique {\it Synchrosqueezing transform} (SST) to irregular data samples in order to allow online computation. Secondly, for real-time dynamic information extraction from an oscillatory signal via SST, a family of vanishing-moment and minimum-supported spline-wavelets (to be called VM wavelets) are introduced for on-line computation of the CWT and its derivative. The second objective of this paper is to apply the proposed real-time algorithm and VM wavelets to clinical applications, particularly to the study of the "anesthetic depth" of a patient during surgery, with emphasis on analyzing two dynamic quantities: the "instantaneous frequencies" and the "non-rhythmic to rhythmic ratios" of the patient's respiration, based on a one-lead electrocardiogram (ECG) signal.It is envisioned that the proposed algorithm and VM wavelets should enable real-time monitoring of "anesthetic depth", during surgery, from the respiration signal via ECG measurement.

math.NA

Voltage-induced defect mode interaction in a one-dimensional photonic crystal with a twisted-nematic defect layer

Defect modes are investigated in a band gap of an electrically tunable one-dimensional photonic crystal infiltrated with a twisted-nematic liquid crystal (1D PC/TN). Their frequency shift and interference under applied voltage are studied both experimentally and theoretically. We deal with the case where the defect layer thickness is much larger than the wavelength (Mauguin condition). It is shown theoretically that the defect modes could have a complex structure with the elliptic polarization. Two series of polarized modes interact with each other and exhibit an avoided crossing phenomenon in the case of opposite parity.

physics.optics