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Yuan He

Publications and source records attributed to Yuan He.

At least 19 recordsLinked to original sources

A unification of Euler-Maclaurin and Euler-Boole summation formulas

In this paper, we establish a summation formula associated with the generalized Apostol-Bernoulli functions. This formula unifies the Euler-Maclaurin summation formula, the Euler-Boole summation formula, and the character analogues of these two formulas. We also apply it to obtain the general power sum formula and the special values of Berndt's generalized $L$-function at non-positive integers.

math.NT

On the special values of Berndt's generalized $L$-function

In this paper, we study the generalized $L$-function considered by Berndt (1975). We introduce the generalized Apostol-Bernoulli polynomials and the generalized Apostol-Bernoulli functions, and establish some properties for them, including the Fourier series for these functions. We show that the values of Berndt's generalized $L$-function at integers are explicitly evaluated in terms of the generalized Apostol-Bernoulli functions.

math.NT

PIMID: A Full-System Simulator with Intricacy and Diversity for Processing-in-Memory

Processing-in-Memory addresses the memory wall by co-locating computation with memory, but because real PIM hardware remains scarce, simulation is the primary way to explore the PIM design space. Yet existing PIM simulators each cover only part of that space: they typically model a single memory technology, fix processing elements at one level of the memory hierarchy, support a single execution model, and stop at the device boundary. We therefore present PIMID, an execution- and trace-driven full-system simulator that closes these gaps in one tool. PIMID supports both the shared-memory and message-passing execution models, running annotated parallel code in OpenMP and MPI side by side across eleven memory technologies (seven DRAM standards, SRAM, and three non-volatile memories); it places PEs anywhere from subarrays to logic dies, sweeps PE count and core-model fidelity, and prices the in-memory network per technology from measured congestion. Its single-process host-device co-simulation resolves an end-to-end time and energy breakdown (host preparation, device compute, and explicit boundary charges) that device-only tools cannot produce. Across the resulting dual-execution-model dataset, PIMID shows that the memory technology alone moves execution time by more than an order of magnitude and that the best host main memory is not the best PIM substrate; that regular kernels scale superlinearly with PE count as in-memory bandwidth co-scales with compute; that graph traversal under message-passing hits a collective-communication wall absent under shared memory; and that at full-system scope the offload trades time for energy only on the bandwidth-class memory: shared-memory offload saves energy on HBM3 while a 16-core host keeps every end-to-end time win. PIMID's plugin interfaces let new engines and models be added through standardized YAML specifications as PIM technology evolves.

cs.AR

Spontaneous patterning of cell size on curved surfaces

Tissue surfaces exhibit complex curvature during embryogenesis and oncogenesis. Evidence shows that cells can actively sense curvature to regulate behavior and fate, yet the underlying mechanism remains unclear. Here, we develop a vertex model for arbitrary curved surfaces and uncover spontaneous cell size patterning on ellipsoidal surfaces: cells in high-curvature regions are consistently larger than those in low-curvature regions. This non-uniformity arises from a mechanical competition encoded in Riemannian geometry: positive Gaussian curvature reduces the perimeter-to-area ratio of polygonal cells, relaxing cell-edge tension in high-curvature regions, which is compensated by area expansion to maintain global force balance. This area pattern is robust against variations in model parameters and matches observations in biological systems. The perimeter pattern, in contrast, is governed by competition between the intrinsic geometric tendency and the deformation required by force balance, and undergoes reversal beyond a critical shape index. Together, these findings establish self-organized spatial variations in cell size as a potential physical mechanism for curvature sensing.

physics.bio-ph

On Effectiveness and Efficiency of Agentic Tool-calling and RL Training

Tool-calling is a central component of modern large language model (LLM) agents, equipping them with skills beyond their parametric knowledge. This paper studies tool-calling along two complementary axes: effectiveness, i.e., how this capability is measured, and efficiency, i.e., how it is learned. On effectiveness, we systematically analyze tool-calling evaluation pipelines and show that results can be highly sensitive to seemingly minor, often undocumented implementation choices including the random seed, system prompt, multi-turn template construction, and how prior interaction/reasoning history is carried forward. These choices can lead to substantial differences in reported performance, especially in multi-turn settings where without rigorous standardization, leaderboard rankings are unreliable. On efficiency, we examine standard reinforcement learning (RL) for tool-calling and identify two sources of computational waste: (i) during rollouts, many prompts produce no learning signal, and (ii) during policy updates, optimization incurs high computational cost. Guided by these findings, we introduce two techniques that accelerate RL-based tool-calling training, achieving substantial wall-clock speedup without degrading performance.

cs.LG

EigentSearch-Q+: Enhancing Deep Research Agents with Structured Reasoning Tools

Deep research requires reasoning over web evidence to answer open-ended questions, and it is a core capability for AI agents. Yet many deep research agents still rely on implicit, unstructured search behavior that causes redundant exploration and brittle evidence aggregation. Motivated by Anthropic's "think" tool paradigm and insights from the information-retrieval literature, we introduce Q+, a set of query and evidence processing tools that make web search more deliberate by guiding query planning, monitoring search progress, and extracting evidence from long web snapshots. We integrate Q+ into the browser sub-agent of Eigent, an open-source, production-ready multi-agent workforce for computer use, yielding EigentSearch-Q+. Across four benchmarks (SimpleQA-Verified, FRAMES, WebWalkerQA, and XBench DeepSearch), Q+ improves Eigent's browser agent benchmark-size-weighted average accuracy by 3.0, 3.8, and 0.6 percentage points (pp) for GPT-4.1, GPT-5.1, and Minimax M2.5 model backends, respectively. Case studies further suggest that EigentSearch-Q+ produces more coherent tool-calling trajectories by making search progress and evidence handling explicit.

cs.AI

MetaDAT: Generalizable Trajectory Prediction via Meta Pre-training and Data-Adaptive Test-Time Updating

Existing trajectory prediction methods exhibit significant performance degradation under distribution shifts during test time. Although test-time training techniques have been explored to enable adaptation, current approaches rely on an offline pre-trained predictor that lacks online learning flexibility. Moreover, they depend on fixed online model updating rules that do not accommodate the specific characteristics of test data. To address these limitations, we first propose a meta-learning framework to directly optimize the predictor for fast and accurate online adaptation, which performs bi-level optimization on the performance of simulated test-time adaptation tasks during pre-training. Furthermore, at test time, we introduce a data-adaptive model updating mechanism that dynamically adjusts the predefined learning rates and updating frequencies based on online partial derivatives and hard sample selection. This mechanism enables the online learning rate to suit the test data, and focuses on informative hard samples to enhance efficiency. Experiments are conducted on various challenging cross-dataset distribution shift scenarios, including nuScenes, Lyft, and Waymo. Results demonstrate that our method achieves superior adaptation accuracy, surpassing state-of-the-art test-time training methods for trajectory prediction. Additionally, our method excels under suboptimal learning rates and high FPS demands, showcasing its robustness and practicality.

cs.CV

Time-marching representation based quantum algorithms for the Lattice Boltzmann model of the advection-diffusion equation

This article introduces a novel framework for developing quantum algorithms for the Lattice Boltzmann Method (LBM) applied to the advection-diffusion equation. We formulate the collision-streaming evolution of the LBM as a compact time-marching scheme and rigorously establish its stability under low Mach number conditions. This unified formulation eliminates the need for classical measurement at each time step, enabling a systematic and fully quantum implementation. Building upon this representation, we investigate two distinct quantum algorithmic approaches. The first is a time-marching quantum algorithm realized through sequential evolution operators, for which we provide a detailed implementation-including block-encoding and dilating unitarization-along with a full complexity analysis. The second employs a quantum linear systems algorithm, which encodes the entire time evolution into a single global linear system. We demonstrate that both methods achieve comparable asymptotic time complexities. The proposed algorithms are validated through numerical simulations of benchmark problems in one and two dimensions. This work provides a systematic pathway that avoids full-state measurement and reinitialization at every time step for the quantum simulation of advection-diffusion processes via the lattice Boltzmann paradigm.

math-ph

Necking of epithelial tissues with cellular topological transition

As the cover of embryos and adult organisms, epithelial tissues are subjected to substantial mechanical forces in tissue morphogenesis. However, the finite deformation behaviors of epithelial tissues remain largely unexplored. This study combines discrete vertex simulations with a multiscale constitutive model to investigate the necking behavior of epithelial tissues. In the multiscale model, the shape changes and topological transitions of single cells are mapped to the elastic and inelastic tissue deformations via a mean-field formulation. Our results show that the necking bifurcation of a stretched tissue arises from cellular topological transitions. The bifurcation condition and the steady state of necking propagation are predicted from the constitutive model and validated by vertex simulations. Furthermore, we find that topological defects in disordered tissues facilitate necking bifurcation but impede its propagation. These defects also induce the necked region to collapse into a thin thread, as observed in real tissues. Together, our work provides valuable insights into the deformation behaviors of epithelial tissues.

physics.bio-ph

GR-Agent: Adaptive Graph Reasoning Agent under Incomplete Knowledge

Large language models (LLMs) achieve strong results on knowledge graph question answering (KGQA), but most benchmarks assume complete knowledge graphs (KGs) where direct supporting triples exist. This reduces evaluation to shallow retrieval and overlooks the reality of incomplete KGs, where many facts are missing and answers must be inferred from existing facts. We bridge this gap by proposing a methodology for constructing benchmarks under KG incompleteness, which removes direct supporting triples while ensuring that alternative reasoning paths required to infer the answer remain. Experiments on benchmarks constructed using our methodology show that existing methods suffer consistent performance degradation under incompleteness, highlighting their limited reasoning ability. To overcome this limitation, we present the Adaptive Graph Reasoning Agent (GR-Agent). It first constructs an interactive environment from the KG, and then formalizes KGQA as agent environment interaction within this environment. GR-Agent operates over an action space comprising graph reasoning tools and maintains a memory of potential supporting reasoning evidence, including relevant relations and reasoning paths. Extensive experiments demonstrate that GR-Agent outperforms non-training baselines and performs comparably to training-based methods under both complete and incomplete settings.

cs.AI

Merging Bodies, Dividing Conflict: Body-Swapping in Mixed Reality Increases Closeness Yet Weakens the Joint Simon Effect

Mixed Reality (MR) presents novel opportunities to investigate how individuals perceive themselves and others during shared, augmented experiences within a common physical environment. Previous research has demonstrated that users can embody avatars in MR, temporarily extending their sense of self. However, there has been limited exploration of body-swapping, a condition in which two individuals simultaneously inhabit each other's avatars, and its potential effects on social interaction in immersive environments. To address this gap, we adapted the Joint Simon Task (JST), a well-established implicit paradigm, to examine how body-swapping influences the cognitive and perceptual boundaries between self and other. Our results indicate that body-swapping led participants to experience themselves and their partner as functioning like a single, unified system, as in two bodies operating as one agent. This suggests possible cognitive and perceptual changes that go beyond simple collaboration. Our findings have significant implications for the design of MR systems intended to support collaboration, empathy, social learning, and therapeutic interventions through shared embodiment.

cs.HC

Loong: Synthesize Long Chain-of-Thoughts at Scale through Verifiers

Recent advances in Large Language Models (LLMs) have shown that their reasoning capabilities can be significantly improved through Reinforcement Learning with Verifiable Reward (RLVR), particularly in domains like mathematics and programming, where ground-truth correctness can be automatically evaluated. However, extending this success to other reasoning-intensive domains remains challenging due to the scarcity of high-quality, verifiable datasets and the high cost of human supervision. In this work, we introduce the Loong Project: an open-source framework for scalable synthetic data generation and verification across a diverse range of reasoning-intensive domains. The framework consists of two key components: (1) LoongBench, a curated seed dataset containing 8,729 human-vetted examples across 12 domains (e.g., Advanced Mathematics, Chemistry, Logic), each paired with executable code and rich metadata; and (2) LoongEnv, a modular synthetic data generation environment that supports multiple prompting strategies to produce new question-answer-code triples. Together, these components form an agent-environment loop that enables reinforcement learning, where an LLM-based agent is rewarded for generating Chain-of-Thought (CoT) solutions that align with code-executed answers. Empirically, we benchmark LoongBench on a broad suite of both open-source and proprietary LLMs to evaluate domain coverage and reveal performance bottlenecks. In addition, we conduct a comprehensive analysis of synthetic data generated by LoongEnv, examining correctness, difficulty, and diversity. Code and documentation are available at https://github.com/camel-ai/loong.

cs.LG

Self-Exploring Language Models for Explainable Link Forecasting on Temporal Graphs via Reinforcement Learning

Forecasting future links is a central task in temporal graph (TG) reasoning, requiring models to leverage historical interactions to predict upcoming ones. Traditional neural approaches, such as temporal graph neural networks, achieve strong performance but lack explainability and cannot be applied to unseen graphs without retraining. Recent studies have begun to explore using large language models (LLMs) for graph reasoning, but most of them are constrained to static graphs or small synthetic TGs and lack the evaluation of the quality of reasoning traces generated by LLMs. In this work, we present Reasoning-Enhanced Learning for Temporal Graphs (ReaL-TG), a reinforcement learning framework that fine-tunes LLMs to perform explainable link forecasting on real-world TGs. ReaL-TG uses outcome-based reward to encourage models to self-explore reasoning strategies from graph structure and to produce explanations that directly justify their predictions. To enable evaluation on LLM-generated reasoning traces, we propose a new evaluation protocol combining ranking metrics with an LLM-as-a-Judge system that assesses both the quality of reasoning and the impact of hallucinations. Experiments with ReaL-TG-4B, obtained by fine-tuning Qwen3-4B under our framework, show that it outperforms much larger frontier LLMs, including GPT-5 mini, on ranking metrics, while producing high-quality explanations confirmed by both the LLM judge and human evaluation.

cs.AI

ArgRAG: Explainable Retrieval Augmented Generation using Quantitative Bipolar Argumentation

Retrieval-Augmented Generation (RAG) enhances large language models by incorporating external knowledge, yet suffers from critical limitations in high-stakes domains -- namely, sensitivity to noisy or contradictory evidence and opaque, stochastic decision-making. We propose ArgRAG, an explainable, and contestable alternative that replaces black-box reasoning with structured inference using a Quantitative Bipolar Argumentation Framework (QBAF). ArgRAG constructs a QBAF from retrieved documents and performs deterministic reasoning under gradual semantics. This allows faithfully explaining and contesting decisions. Evaluated on two fact verification benchmarks, PubHealth and RAGuard, ArgRAG achieves strong accuracy while significantly improving transparency.

cs.AI

What Breaks Knowledge Graph based RAG? Benchmarking and Empirical Insights into Reasoning under Incomplete Knowledge

Knowledge Graph-based Retrieval-Augmented Generation (KG-RAG) is an increasingly explored approach for combining the reasoning capabilities of large language models with the structured evidence of knowledge graphs. However, current evaluation practices fall short: existing benchmarks often include questions that can be directly answered using existing triples in KG, making it unclear whether models perform reasoning or simply retrieve answers directly. Moreover, inconsistent evaluation metrics and lenient answer matching criteria further obscure meaningful comparisons. In this work, we introduce a general method for constructing benchmarks and present BRINK (Benchmark for Reasoning under Incomplete Knowledge) to systematically assess KG-RAG methods under knowledge incompleteness. Our empirical results show that current KG-RAG methods have limited reasoning ability under missing knowledge, often rely on internal memorization, and exhibit varying degrees of generalization depending on their design.

cs.AI

Multibeam High Throughput Satellite: Hardware Foundation, Resource Allocation, and Precoding

With its wide coverage and uninterrupted service, satellite communication is a critical technology for next-generation 6G communications. High throughput satellite (HTS) systems, utilizing multipoint beam and frequency multiplexing techniques, enable satellite communication capacity of up to Tbps to meet the growing traffic demand. Therefore, it is imperative to review the-state-of-the-art of multibeam HTS systems and identify their associated challenges and perspectives. Firstly, we summarize the multibeam HTS hardware foundations, including ground station systems, on-board payloads, and user terminals. Subsequently, we review the flexible on-board radio resource allocation approaches of bandwidth, power, time slot, and joint allocation schemes of HTS systems to optimize resource utilization and cater to non-uniform service demand. Additionally, we survey multibeam precoding methods for the HTS system to achieve full-frequency reuse and interference cancellation, which are classified according to different deployments such as single gateway precoding, multiple gateway precoding, on-board precoding, and hybrid on-board/on-ground precoding. Finally, we disscuss the challenges related to Q/V band link outage, time and frequency synchronization of gateways, the accuracy of channel state information (CSI), payload light-weight development, and the application of deep learning (DL). Research on these topics will contribute to enhancing the performance of HTS systems and finally delivering high-speed data to areas underserved by terrestrial networks.

eess.SP

Language Models as Ontology Encoders

OWL (Web Ontology Language) ontologies which are able to formally represent complex knowledge and support semantic reasoning have been widely adopted across various domains such as healthcare and bioinformatics. Recently, ontology embeddings have gained wide attention due to its potential to infer plausible new knowledge and approximate complex reasoning. However, existing methods face notable limitations: geometric model-based embeddings typically overlook valuable textual information, resulting in suboptimal performance, while the approaches that incorporate text, which are often based on language models, fail to preserve the logical structure. In this work, we propose a new ontology embedding method OnT, which tunes a Pretrained Language Model (PLM) via geometric modeling in a hyperbolic space for effectively incorporating textual labels and simultaneously preserving class hierarchies and other logical relationships of Description Logic EL. Extensive experiments on four real-world ontologies show that OnT consistently outperforms the baselines including the state-of-the-art across both tasks of prediction and inference of axioms. OnT also demonstrates strong potential in real-world applications, indicated by its robust transfer learning abilities and effectiveness in real cases of constructing a new ontology from SNOMED CT. Data and code are available at https://github.com/HuiYang1997/OnT.

cs.AI

Distilling Tool Knowledge into Language Models via Back-Translated Traces

Large language models (LLMs) often struggle with mathematical problems that require exact computation or multi-step algebraic reasoning. Tool-integrated reasoning (TIR) offers a promising solution by leveraging external tools such as code interpreters to ensure correctness, but it introduces inference-time dependencies that hinder scalability and deployment. In this work, we propose a new paradigm for distilling tool knowledge into LLMs purely through natural language. We first construct a Solver Agent that solves math problems by interleaving planning, symbolic tool calls, and reflective reasoning. Then, using a back-translation pipeline powered by multiple LLM-based agents, we convert interleaved TIR traces into natural language reasoning traces. A Translator Agent generates explanations for individual tool calls, while a Rephrase Agent merges them into a fluent and globally coherent narrative. Empirically, we show that fine-tuning a small open-source model on these synthesized traces enables it to internalize both tool knowledge and structured reasoning patterns, yielding gains on competition-level math benchmarks without requiring tool access at inference.

cs.LG