arXiv subjects

Yuanjing Feng

Publications and source records attributed to Yuanjing Feng.

At least 19 recordsLinked to original sources

arXiv2026

CNsEMD: An Expert-Annotated Multi-Field-Strength MRI Dataset and a Hyperspherical Manifold Network for Multimodal Cranial Nerve Parcellation

Cranial nerves (CNs) play essential roles in sensory, motor, and autonomic functions. Accurate CN parcellation from multimodal magnetic resonance imaging (MRI) is crucial for neuroanatomical analysis and neurosurgical planning. However, accurate CN parcellation remains extremely challenging because CNs are very small, exhibit low image contrast, and have slender tubular morphologies and complex anatomical trajectories. Moreover, the lack of publicly available, expert-annotated datasets has impeded the development and fair benchmarking of learning-based CN analysis methods. In this work, we introduce CNsEMD, an expert-annotated multimodal dataset for CN parcellation. It comprises data from 202 subjects acquired on 3T, 5T, and 7T MRI scanners. We further propose the projective hyperspherical manifold network (PHM-Net), which learns cross-modal representations by capturing angular relationships in a shared hyperspherical embedding space. Rather than performing multimodal fusion in Euclidean space, the proposed Hyperspherical cross-modal interaction (HCI) module enables bidirectional feature exchange between T1-weighted (T1w) and direction-encoded color (DEC) representations on a unit hypersphere. The Magnitude-preserving projective hyperspherical orientation representation (PHOR) captures the axial nature of DEC orientations while preserving diffusion magnitude. The hyperspherical prototype segmentation head (HPSH) further extends angular similarity to voxel-wise classification using normalized voxel embeddings and learnable class prototypes. Extensive experimental results on the CNsEMD dataset demonstrate the effectiveness of our PHM-Net against state-of-the-art methods. CNsEMD establishes a reproducible benchmark for multimodal CN imaging, while PHM-Net provides a geometry-consistent solution for CN parcellation across diverse MRI acquisitions.

cs.CV↗

arXiv2026

Online Test-Time Adaptation for Generalizable Dynamic Graph Anomaly Detection

Generalizable dynamic graph anomaly detection (DGAD) enables pretrained detectors to identify anomalies in unseen target domains without costly retraining. However, existing methods often fail for two reasons. First, they mainly rely on domain-agnostic patterns and miss domain-specific patterns that keep evolving. Second, they assume access to the full target domain data, whereas in more practical online test-time adaptation settings, target data arrive sequentially in unlabeled chunks. To address these limitations, we formulate online test-time adaptation for generalizable DGAD and propose OTTA-DGAD. OTTA-DGAD first extracts dynamic prototypes, i.e., evolving representations of normal and anomalous patterns, from temporal ego-graphs and stores them in a memory buffer. The buffer selectively retains general patterns shared across the source domains used for pretraining while incorporating new patterns from the target domain. An anomaly scorer then compares incoming edge representations against these prototypes to identify both general and domain-specific anomalies. During adaptation, OTTA-DGAD updates the memory buffer using reliable pseudo-labels identified through confidence-based detection. It further enriches each target chunk with relevant representations retained from previous chunks, compensating for information loss resulting from the sequential arrival of data. Extensive experiments under strict test-then-adapt OTTA settings demonstrate state-of-the-art performance on ten real-world datasets from diverse domains.

cs.LG↗

arXiv2025

Prefrontal scaling of reward prediction error readout gates reinforcement-derived adaptive behavior in primates

Reinforcement learning (RL) enables adaptive behavior across species via reward prediction errors (RPEs), but the neural origins of species-specific adaptability remain unknown. Integrating RL modeling, transcriptomics, and neuroimaging during reversal learning, we discovered convergent RPE signatures - shared monoaminergic/synaptic gene upregulation and neuroanatomical representations, yet humans outperformed macaques behaviorally. Single-trial decoding showed RPEs guided choices similarly in both species, but humans disproportionately recruited dorsal anterior cingulate (dACC) and dorsolateral prefrontal cortex (dlPFC). Cross-species alignment uncovered that macaque prefrontal circuits encode human-like optimal RPEs yet fail to translate them into action. Adaptability scaled not with RPE encoding fidelity, but with the areal extent of dACC/dlPFC recruitment governing RPE-to-action transformation. These findings resolve an evolutionary puzzle: behavioral performance gaps arise from executive cortical readout efficiency, not encoding capacity.

q-bio.NC↗

arXiv2025

Homomorphic Mappings for Value-Preserving State Aggregation in Markov Decision Processes

State aggregation aims to reduce the computational complexity of solving Markov Decision Processes (MDPs) while preserving the performance of the original system. A fundamental challenge lies in optimizing policies within the aggregated, or abstract, space such that the performance remains optimal in the ground MDP-a property referred to as {"}optimal policy equivalence {"}. This paper presents an abstraction framework based on the notion of homomorphism, in which two Markov chains are deemed homomorphic if their value functions exhibit a linear relationship. Within this theoretical framework, we establish a sufficient condition for the equivalence of optimal policy. We further examine scenarios where the sufficient condition is not met and derive an upper bound on the approximation error and a performance lower bound for the objective function under the ground MDP. We propose Homomorphic Policy Gradient (HPG), which guarantees optimal policy equivalence under sufficient conditions, and its extension, Error-Bounded HPG (EBHPG), which balances computational efficiency and the performance loss induced by aggregation. In the experiments, we validated the theoretical results and conducted comparative evaluations against seven algorithms.

cs.LG↗

arXiv2025

Tractography-Guided Dual-Label Collaborative Learning for Multi-Modal Cranial Nerves Parcellation

The parcellation of Cranial Nerves (CNs) serves as a crucial quantitative methodology for evaluating the morphological characteristics and anatomical pathways of specific CNs. Multi-modal CNs parcellation networks have achieved promising segmentation performance, which combine structural Magnetic Resonance Imaging (MRI) and diffusion MRI. However, insufficient exploration of diffusion MRI information has led to low performance of existing multi-modal fusion. In this work, we propose a tractography-guided Dual-label Collaborative Learning Network (DCLNet) for multi-modal CNs parcellation. The key contribution of our DCLNet is the introduction of coarse labels of CNs obtained from fiber tractography through CN atlas, and collaborative learning with precise labels annotated by experts. Meanwhile, we introduce a Modality-adaptive Encoder Module (MEM) to achieve soft information swapping between structural MRI and diffusion MRI. Extensive experiments conducted on the publicly available Human Connectome Project (HCP) dataset demonstrate performance improvements compared to single-label network. This systematic validation underscores the effectiveness of dual-label strategies in addressing inherent ambiguities in CNs parcellation tasks.

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arXiv2025

Automated Mapping the Pathways of Cranial Nerve II, III, V, and VII/VIII: A Multi-Parametric Multi-Stage Diffusion Tractography Atlas

Cranial nerves (CNs) play a crucial role in various essential functions of the human brain, and mapping their pathways from diffusion MRI (dMRI) provides valuable preoperative insights into the spatial relationships between individual CNs and key tissues. However, mapping a comprehensive and detailed CN atlas is challenging because of the unique anatomical structures of each CN pair and the complexity of the skull base environment.In this work, we present what we believe to be the first study to develop a comprehensive diffusion tractography atlas for automated mapping of CN pathways in the human brain. The CN atlas is generated by fiber clustering by using the streamlines generated by multi-parametric fiber tractography for each pair of CNs. Instead of disposable clustering, we explore a new strategy of multi-stage fiber clustering for multiple analysis of approximately 1,000,000 streamlines generated from the 50 subjects from the Human Connectome Project (HCP). Quantitative and visual experiments demonstrate that our CN atlas achieves high spatial correspondence with expert manual annotations on multiple acquisition sites, including the HCP dataset, the Multi-shell Diffusion MRI (MDM) dataset and two clinical cases of pituitary adenoma patients. The proposed CN atlas can automatically identify 8 fiber bundles associated with 5 pairs of CNs, including the optic nerve CN II, oculomotor nerve CN III, trigeminal nerve CN V and facial-vestibulocochlear nerve CN VII/VIII, and its robustness is demonstrated experimentally. This work contributes to the field of diffusion imaging by facilitating more efficient and automated mapping the pathways of multiple pairs of CNs, thereby enhancing the analysis and understanding of complex brain structures through visualization of their spatial relationships with nearby anatomy.

cs.CV↗

arXiv2025

Convergent and divergent connectivity patterns of the arcuate fasciculus in macaques and humans

The organization and connectivity of the arcuate fasciculus (AF) in nonhuman primates remain contentious, especially concerning how its anatomy diverges from that of humans. Here, we combined cross-scale single-neuron tracing - using viral-based genetic labeling and fluorescence micro-optical sectioning tomography in macaques (n = 4; age 3 - 11 years) - with whole-brain tractography from 11.7T diffusion MRI. Complemented by spectral embedding analysis of 7.0T MRI in humans, we performed a comparative connectomic analysis of the AF across species. We demonstrate that the macaque AF originates in the temporal-parietal cortex, traverses the auditory cortex and parietal operculum, and projects into prefrontal regions. In contrast, the human AF exhibits greater expansion into the middle temporal gyrus and stronger prefrontal and parietal operculum connectivity - divergences quantified by Kullback-Leibler analysis that likely underpin the evolutionary specialization of human language networks. These interspecies differences - particularly the human AF's broader temporal integration and strengthened frontoparietal linkages - suggest a connectivity-based substrate for the emergence of advanced language processing unique to humans. Furthermore, our findings offer a neuroanatomical framework for understanding AF-related disorders such as aphasia and dyslexia, where aberrant connectivity disrupts language function.

q-bio.NC↗

arXiv2025

Cross-Sequence Semi-Supervised Learning for Multi-Parametric MRI-Based Visual Pathway Delineation

Accurately delineating the visual pathway (VP) is crucial for understanding the human visual system and diagnosing related disorders. Exploring multi-parametric MR imaging data has been identified as an important way to delineate VP. However, due to the complex cross-sequence relationships, existing methods cannot effectively model the complementary information from different MRI sequences. In addition, these existing methods heavily rely on large training data with labels, which is labor-intensive and time-consuming to obtain. In this work, we propose a novel semi-supervised multi-parametric feature decomposition framework for VP delineation. Specifically, a correlation-constrained feature decomposition (CFD) is designed to handle the complex cross-sequence relationships by capturing the unique characteristics of each MRI sequence and easing the multi-parametric information fusion process. Furthermore, a consistency-based sample enhancement (CSE) module is developed to address the limited labeled data issue, by generating and promoting meaningful edge information from unlabeled data. We validate our framework using two public datasets, and one in-house Multi-Shell Diffusion MRI (MDM) dataset. Experimental results demonstrate the superiority of our approach in terms of delineation performance when compared to seven state-of-the-art approaches.

cs.CV↗

arXiv2025

An Arbitrary-Modal Fusion Network for Volumetric Cranial Nerves Tract Segmentation

The segmentation of cranial nerves (CNs) tract provides a valuable quantitative tool for the analysis of the morphology and trajectory of individual CNs. Multimodal CNs tract segmentation networks, e.g., CNTSeg, which combine structural Magnetic Resonance Imaging (MRI) and diffusion MRI, have achieved promising segmentation performance. However, it is laborious or even infeasible to collect complete multimodal data in clinical practice due to limitations in equipment, user privacy, and working conditions. In this work, we propose a novel arbitrary-modal fusion network for volumetric CNs tract segmentation, called CNTSeg-v2, which trains one model to handle different combinations of available modalities. Instead of directly combining all the modalities, we select T1-weighted (T1w) images as the primary modality due to its simplicity in data acquisition and contribution most to the results, which supervises the information selection of other auxiliary modalities. Our model encompasses an Arbitrary-Modal Collaboration Module (ACM) designed to effectively extract informative features from other auxiliary modalities, guided by the supervision of T1w images. Meanwhile, we construct a Deep Distance-guided Multi-stage (DDM) decoder to correct small errors and discontinuities through signed distance maps to improve segmentation accuracy. We evaluate our CNTSeg-v2 on the Human Connectome Project (HCP) dataset and the clinical Multi-shell Diffusion MRI (MDM) dataset. Extensive experimental results show that our CNTSeg-v2 achieves state-of-the-art segmentation performance, outperforming all competing methods.

eess.IV↗

arXiv2024

Bundle-specific Tractogram Distribution Estimation Using Higher-order Streamline Differential Equation

Tractography traces the peak directions extracted from fiber orientation distribution (FOD) suffering from ambiguous spatial correspondences between diffusion directions and fiber geometry, which is prone to producing erroneous tracks while missing true positive connections. The peaks-based tractography methods 'locally' reconstructed streamlines in 'single to single' manner, thus lacking of global information about the trend of the whole fiber bundle. In this work, we propose a novel tractography method based on a bundle-specific tractogram distribution function by using a higher-order streamline differential equation, which reconstructs the streamline bundles in 'cluster to cluster' manner. A unified framework for any higher-order streamline differential equation is presented to describe the fiber bundles with disjoint streamlines defined based on the diffusion tensor vector field. At the global level, the tractography process is simplified as the estimation of bundle-specific tractogram distribution (BTD) coefficients by minimizing the energy optimization model, and is used to characterize the relations between BTD and diffusion tensor vector under the prior guidance by introducing the tractogram bundle information to provide anatomic priors. Experiments are performed on simulated Hough, Sine, Circle data, ISMRM 2015 Tractography Challenge data, FiberCup data, and in vivo data from the Human Connectome Project (HCP) data for qualitative and quantitative evaluation. The results demonstrate that our approach can reconstruct the complex global fiber bundles directly. BTD reduces the error deviation and accumulation at the local level and shows better results in reconstructing long-range, twisting, and large fanning tracts.

cs.CV↗

arXiv2024

Anatomy-guided fiber trajectory distribution estimation for cranial nerves tractography

Diffusion MRI tractography is an important tool for identifying and analyzing the intracranial course of cranial nerves (CNs). However, the complex environment of the skull base leads to ambiguous spatial correspondence between diffusion directions and fiber geometry, and existing diffusion tractography methods of CNs identification are prone to producing erroneous trajectories and missing true positive connections. To overcome the above challenge, we propose a novel CNs identification framework with anatomy-guided fiber trajectory distribution, which incorporates anatomical shape prior knowledge during the process of CNs tracing to build diffusion tensor vector fields. We introduce higher-order streamline differential equations for continuous flow field representations to directly characterize the fiber trajectory distribution of CNs from the tract-based level. The experimental results on the vivo HCP dataset and the clinical MDM dataset demonstrate that the proposed method reduces false-positive fiber production compared to competing methods and produces reconstructed CNs (i.e. CN II, CN III, CN V, and CN VII/VIII) that are judged to better correspond to the known anatomy.

eess.IV↗

arXiv2024

LESEN: Label-Efficient deep learning for Multi-parametric MRI-based Visual Pathway Segmentation

Recent research has shown the potential of deep learning in multi-parametric MRI-based visual pathway (VP) segmentation. However, obtaining labeled data for training is laborious and time-consuming. Therefore, it is crucial to develop effective algorithms in situations with limited labeled samples. In this work, we propose a label-efficient deep learning method with self-ensembling (LESEN). LESEN incorporates supervised and unsupervised losses, enabling the student and teacher models to mutually learn from each other, forming a self-ensembling mean teacher framework. Additionally, we introduce a reliable unlabeled sample selection (RUSS) mechanism to further enhance LESEN's effectiveness. Our experiments on the human connectome project (HCP) dataset demonstrate the superior performance of our method when compared to state-of-the-art techniques, advancing multimodal VP segmentation for comprehensive analysis in clinical and research settings. The implementation code will be available at: https://github.com/aldiak/Semi-Supervised-Multimodal-Visual-Pathway- Delineation.

eess.IV↗

arXiv2024

Modality Exchange Network for Retinogeniculate Visual Pathway Segmentation

Accurate segmentation of the retinogeniculate visual pathway (RGVP) aids in the diagnosis and treatment of visual disorders by identifying disruptions or abnormalities within the pathway. However, the complex anatomical structure and connectivity of RGVP make it challenging to achieve accurate segmentation. In this study, we propose a novel Modality Exchange Network (ME-Net) that effectively utilizes multi-modal magnetic resonance (MR) imaging information to enhance RGVP segmentation. Our ME-Net has two main contributions. Firstly, we introduce an effective multi-modal soft-exchange technique. Specifically, we design a channel and spatially mixed attention module to exchange modality information between T1-weighted and fractional anisotropy MR images. Secondly, we propose a cross-fusion module that further enhances the fusion of information between the two modalities. Experimental results demonstrate that our method outperforms existing state-of-the-art approaches in terms of RGVP segmentation performance.

eess.IV↗

arXiv2023

Reconstructing the somatotopic organization of the corticospinal tract remains a challenge for modern tractography methods

The corticospinal tract (CST) is a critically important white matter fiber tract in the human brain that enables control of voluntary movements of the body. Diffusion MRI tractography is the only method that enables the study of the anatomy and variability of the CST pathway in human health. In this work, we explored the performance of six widely used tractography methods for reconstructing the CST and its somatotopic organization. We perform experiments using diffusion MRI data from the Human Connectome Project. Four quantitative measurements including reconstruction rate, the WM-GM interface coverage, anatomical distribution of streamlines, and correlation with cortical volumes to assess the advantages and limitations of each method. Overall, we conclude that while current tractography methods have made progress toward the well-known challenge of improving the reconstruction of the lateral projections of the CST, the overall problem of performing a comprehensive CST reconstruction, including clinically important projections in the lateral (hand and face area) and medial portions (leg area), remains an important challenge for diffusion MRI tractography.

cs.CV↗

arXiv2022

DeepRGVP: A Novel Microstructure-Informed Supervised Contrastive Learning Framework for Automated Identification Of The Retinogeniculate Pathway Using dMRI Tractography

The retinogeniculate pathway (RGVP) is responsible for carrying visual information from the retina to the lateral geniculate nucleus. Identification and visualization of the RGVP are important in studying the anatomy of the visual system and can inform treatment of related brain diseases. Diffusion MRI (dMRI) tractography is an advanced imaging method that uniquely enables in vivo mapping of the 3D trajectory of the RGVP. Currently, identification of the RGVP from tractography data relies on expert (manual) selection of tractography streamlines, which is time-consuming, has high clinical and expert labor costs, and affected by inter-observer variability. In this paper, we present what we believe is the first deep learning framework, namely DeepRGVP, to enable fast and accurate identification of the RGVP from dMRI tractography data. We design a novel microstructure-informed supervised contrastive learning method that leverages both streamline label and tissue microstructure information to determine positive and negative pairs. We propose a simple and successful streamline-level data augmentation method to address highly imbalanced training data, where the number of RGVP streamlines is much lower than that of non-RGVP streamlines. We perform comparisons with several state-of-the-art deep learning methods that were designed for tractography parcellation, and we show superior RGVP identification results using DeepRGVP.

cs.CV↗

arXiv2020

Interval-driven discrete-time general nonlinear robust control: stabilization with closed-loop robust DOA enlargement

This paper presents new results that allow one to address the discrete-time general nonlinear robust control problem. The uncertain system is described by a general nonlinear function set characterized by the nominal model and the corresponding modeling error bound. Traditional synthesis methods design parameters of a structured robust controller. The key aim of this paper is to find an unstructured robust controller set in the state-control space, which enlarges the estimate of the closed-loop robust domain of attraction (RDOA). Based on the interval analysis arithmetic, a numerical method to estimate the unstructured robust controller set is proposed and the rigorous convergence analysis is given. The existing RDOA results are constrained by the level-set of the Lyapunov function, whereas the results in this paper remove this limitation. Furthermore, a solvable optimization problem is formulated so the estimate of RDOA is enlarged by selecting a Lyapunov function from a Lyapunov function set of sum-of-squares polynomials. The method is then validated by a specific case simulation study and results show more extensive RDOA than the previous methods.

math.OC↗

arXiv2019

Data-Driven Robust Stabilization with RobustDomain of Attraction Estimate for Nonlinear Discrete-Time Systems

Nonlinear robust control is pursued by overcoming the drawback of linear robust control that it ignores available information about existing nonlinearities and the resulting controllers may be too conservative, especially when the nonlinearities are significant. However, most existing nonlinear robust control approaches just consider the affine nonlinear nominal model and thereby ignore available information about existing non-affine nonlinearities. When the general nonlinear nominal model is considered, the robust domain of attraction (RDOA) of closed-loops requires extensive investigation because it is hard to achieve the global stabilization. In this paper, we propose a new nonlinear robust control method based on Lyapunov function to stabilize a discrete-time uncertain system and to estimate the RDOA of closed-loops. First, a sufficient condition for robust stabilization of all plants in a plant set and estimation of the RDOA of all closed-loops is proposed. Then, to tackle the non-affine nonlinearities, a data-driven method of estimating the robust negative-definite domains (RNDD) is presented, and based on it the estimation of the RDOA of closed-loops and the resulting controller design are also given.

eess.SY↗

arXiv2019

Data-Driven Robust Stabilization with Robust DOA Enlargement for Nonlinear Systems

Most of nonlinear robust control methods just consider the affine nonlinear nominal model. When the nominal model is assumed to be affine nonlinear, available information about existing non-affine nonlinearities is ignored. For non-affine nonlinear system, Li et al. (2019) proposes a new nonlinear control method to solve the robust stabilization problem with estimation of the robust closed-loop DOA (Domain of attraction). However, Li et al. (2019) assumes that the Lyapunov function is given and does not consider the problem of finding a good Lyapunov function to enlarge the estimate of the robust closed-loop DOA. The motivation of this paper is to enlarge the estimate of the closed-loop DOA by selecting an appropriate Lyapunov function. To achieve this goal, a solvable optimization problem is formulated to select an appropriate Lyapunov function from a parameterized positive-definite function set. The effectiveness of proposed method is verified by numerical results.

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