arXiv subjects

Yue Yu

Publications and source records attributed to Yue Yu.

At least 181 records · Page 10Linked to original sources

arXiv2025

GUI-World: A Video Benchmark and Dataset for Multimodal GUI-oriented Understanding

Recently, Multimodal Large Language Models (MLLMs) have been used as agents to control keyboard and mouse inputs by directly perceiving the Graphical User Interface (GUI) and generating corresponding commands. However, current agents primarily demonstrate strong understanding capabilities in static environments and are mainly applied to relatively simple domains, such as Web or mobile interfaces. We argue that a robust GUI agent should be capable of perceiving temporal information on the GUI, including dynamic Web content and multi-step tasks. Additionally, it should possess a comprehensive understanding of various GUI scenarios, including desktop software and multi-window interactions. To this end, this paper introduces a new dataset, termed GUI-World, which features meticulously crafted Human-MLLM annotations, extensively covering six GUI scenarios and eight types of GUI-oriented questions in three formats. We evaluate the capabilities of current state-of-the-art MLLMs, including Image LLMs and Video LLMs, in understanding various types of GUI content, especially dynamic and sequential content. Our findings reveal that current models struggle with dynamic GUI content without manually annotated keyframes or operation history. On the other hand, Video LLMs fall short in all GUI-oriented tasks given the sparse GUI video dataset. Therefore, we take the initial step of leveraging a fine-tuned Video LLM, GUI-Vid, as a GUI-oriented assistant, demonstrating an improved understanding of various GUI tasks. However, due to the limitations in the performance of base LLMs, we conclude that using video LLMs as GUI agents remains a significant challenge. We believe our work provides valuable insights for future research in dynamic GUI content understanding. All the dataset and code are publicly available at: https://gui-world.github.io.

cs.CV↗

arXiv2025

A posteriori error estimation for an interior penalty virtual element method of Kirchhoff plates

In this paper, we develop a residual-type a posteriori error estimation for an interior penalty virtual element method (IPVEM) for the Kirchhoff plate bending problem. Building on the work in \cite{FY2023IPVEM}, we adopt a modified discrete variational formulation that incorporates the $ H^1 $-elliptic projector in the jump and average terms. This allows us to simplify the numerical implementation by including the $ H^1 $-elliptic projector in the computable error estimators. We derive the reliability and efficiency of the a posteriori error bound by constructing an enriching operator and establishing some related error estimates that align with $C^0$-continuous interior penalty finite element methods. As observed in the a priori analysis, the interior penalty virtual elements exhibit similar behaviors to $C^0$-continuous elements despite its discontinuity. This observation extends to the a posteriori estimate since we do not need to account for the jumps of the function itself in the discrete scheme and the error estimators. As an outcome of the error estimator, an adaptive VEM is introduced by means of the mesh refinement strategy with the one-hanging-node rule. Numerical results from several benchmark tests confirm the robustness of the proposed error estimators and show the efficiency of the resulting adaptive VEM.

math.NA↗

arXiv2025

MagicQuill: An Intelligent Interactive Image Editing System

Image editing involves a variety of complex tasks and requires efficient and precise manipulation techniques. In this paper, we present MagicQuill, an integrated image editing system that enables swift actualization of creative ideas. Our system features a streamlined yet functionally robust interface, allowing for the articulation of editing operations (e.g., inserting elements, erasing objects, altering color) with minimal input. These interactions are monitored by a multimodal large language model (MLLM) to anticipate editing intentions in real time, bypassing the need for explicit prompt entry. Finally, we apply a powerful diffusion prior, enhanced by a carefully learned two-branch plug-in module, to process editing requests with precise control. Experimental results demonstrate the effectiveness of MagicQuill in achieving high-quality image edits. Please visit https://magic-quill.github.io to try out our system.

cs.CV↗

arXiv2025

Launching Insights: A Pilot Study on Leveraging Real-World Observational Data from the Mayo Clinic Platform to Advance Clinical Research

Backgrounds: Artificial intelligence (AI) is transforming healthcare, yet translating AI models from theoretical frameworks to real-world clinical applications remains challenging. The Mayo Clinic Platform (MCP) was established to address these challenges by providing a scalable ecosystem that integrates real-world multiple modalities data from multiple institutions, advanced analytical tools, and secure computing environments to support clinical research and AI development. Methods: In this study, we conducted four research projects leveraging MCP's data infrastructure and analytical capabilities to demonstrate its potential in facilitating real-world evidence generation and AI-driven clinical insights. Utilizing MCP's tools and environment, we facilitated efficient cohort identification, data extraction, and subsequent statistical or AI-powered analyses. Results: The results underscore MCP's role in accelerating translational research by offering de-identified, standardized real-world data and facilitating AI model validation across diverse healthcare settings. Compared to Mayo's internal Electronic Health Record (EHR) data, MCP provides broader accessibility, enhanced data standardization, and multi-institutional integration, making it a valuable resource for both internal and external researchers. Conclusion: Looking ahead, MCP is well-positioned to transform clinical research through its scalable ecosystem, effectively bridging the divide between AI innovation and clinical deployment. Future investigations will build upon this foundation, further exploring MCP's capacity to advance precision medicine and enhance patient outcomes.

cs.CY↗

arXiv2025

Efficient Evolutionary Search Over Chemical Space with Large Language Models

Molecular discovery, when formulated as an optimization problem, presents significant computational challenges because optimization objectives can be non-differentiable. Evolutionary Algorithms (EAs), often used to optimize black-box objectives in molecular discovery, traverse chemical space by performing random mutations and crossovers, leading to a large number of expensive objective evaluations. In this work, we ameliorate this shortcoming by incorporating chemistry-aware Large Language Models (LLMs) into EAs. Namely, we redesign crossover and mutation operations in EAs using LLMs trained on large corpora of chemical information. We perform extensive empirical studies on both commercial and open-source models on multiple tasks involving property optimization, molecular rediscovery, and structure-based drug design, demonstrating that the joint usage of LLMs with EAs yields superior performance over all baseline models across single- and multi-objective settings. We demonstrate that our algorithm improves both the quality of the final solution and convergence speed, thereby reducing the number of required objective evaluations. Our code is available at http://github.com/zoom-wang112358/MOLLEO

cs.NE↗

arXiv2025

An optimal Petrov-Galerkin framework for operator networks

The optimal Petrov-Galerkin formulation to solve partial differential equations (PDEs) recovers the best approximation in a specified finite-dimensional (trial) space with respect to a suitable norm. However, the recovery of this optimal solution is contingent on being able to construct the optimal weighting functions associated with the trial basis. While explicit constructions are available for simple one- and two-dimensional problems, such constructions for a general multidimensional problem remain elusive. In the present work, we revisit the optimal Petrov-Galerkin formulation through the lens of deep learning. We propose an operator network framework called Petrov-Galerkin Variationally Mimetic Operator Network (PG-VarMiON), which emulates the optimal Petrov-Galerkin weak form of the underlying PDE. The PG-VarMiON is trained in a supervised manner using a labeled dataset comprising the PDE data and the corresponding PDE solution, with the training loss depending on the choice of the optimal norm. The special architecture of the PG-VarMiON allows it to implicitly learn the optimal weighting functions, thus endowing the proposed operator network with the ability to generalize well beyond the training set. We derive approximation error estimates for PG-VarMiON, highlighting the contributions of various error sources, particularly the error in learning the true weighting functions. Several numerical results are presented for the advection-diffusion equation to demonstrate the efficacy of the proposed method. By embedding the Petrov-Galerkin structure into the network architecture, PG-VarMiON exhibits greater robustness and improved generalization compared to other popular deep operator frameworks, particularly when the training data is limited.

math.NA↗

arXiv2025

RoseRAG: Robust Retrieval-augmented Generation with Small-scale LLMs via Margin-aware Preference Optimization

Large language models (LLMs) have achieved impressive performance but face high computational costs and latency, limiting their deployment in resource-constrained settings. In contrast, small-scale LLMs (SLMs) are more efficient yet struggle to capture evolving real-world knowledge. Retrieval-augmented generation (RAG) helps by integrating external knowledge, but imperfect retrieval can introduce distracting noise that misleads SLMs. We propose RoseRAG, a robust RAG framework for SLMs via Margin-aware Preference Optimization. RoseRAG employs multi-turn prompting for detailed reasoning, rejection sampling for high-quality explanations, and contrastive preference selection to refine responses by maximizing the likelihood gap between preferred and non-preferred outputs. By integrating these components into a margin-aware optimization process, RoseRAG robustly enhances the accuracy and reliability of SLMs for RAG applications. Extensive experiments on three open-domain question answering benchmarks indicate that our innovative RoseRAG surpasses state-of-the-art baselines significantly.

cs.CL↗

arXiv2025

Self-Generated Critiques Boost Reward Modeling for Language Models

Reward modeling is crucial for aligning large language models (LLMs) with human preferences, especially in reinforcement learning from human feedback (RLHF). However, current reward models mainly produce scalar scores and struggle to incorporate critiques in a natural language format. We hypothesize that predicting both critiques and the scalar reward would improve reward modeling ability. Motivated by this, we propose Critic-RM, a framework that improves reward models using self-generated critiques without extra supervision. Critic-RM employs a two-stage process: generating and filtering high-quality critiques, followed by joint fine-tuning on reward prediction and critique generation. Experiments across benchmarks show that Critic-RM improves reward modeling accuracy by 3.7%-7.3% compared to standard reward models and LLM judges, demonstrating strong performance and data efficiency. Additional studies further validate the effectiveness of generated critiques in rectifying flawed reasoning steps with 2.5%-3.2% gains in improving reasoning accuracy.

cs.CL↗

arXiv2025

Klotski: Efficient Mixture-of-Expert Inference via Expert-Aware Multi-Batch Pipeline

Mixture of Experts (MoE), with its distinctive sparse structure, enables the scaling of language models up to trillions of parameters without significantly increasing computational costs. However, the substantial parameter size presents a challenge for inference, as the expansion in GPU memory cannot keep pace with the growth in parameters. Although offloading techniques utilise memory from the CPU and disk and parallelise the I/O and computation for efficiency, the computation for each expert in MoE models is often less than the I/O, resulting in numerous bubbles in the pipeline. Therefore, we propose Klotski, an efficient MoE inference engine that significantly reduces pipeline bubbles through a novel expert-aware multi-batch pipeline paradigm. The proposed paradigm uses batch processing to extend the computation time of the current layer to overlap with the loading time of the next layer. Although this idea has been effectively applied to dense models, more batches may activate more experts in the MoE, leading to longer loading times and more bubbles. Thus, unlike traditional approaches, we balance computation and I/O time and minimise bubbles by orchestrating their inference orders based on their heterogeneous computation and I/O requirements and activation patterns under different batch numbers. Moreover, to adapt to different hardware environments and models, we design a constraint-sensitive I/O-compute planner and a correlation-aware expert prefetcher for a schedule that minimises pipeline bubbles. Experimental results demonstrate that Klotski achieves a superior throughput-latency trade-off compared to state-of-the-art techniques, with throughput improvements of up to 85.12x.

cs.LG↗

arXiv2025

A Review on Knowledge Graphs for Healthcare: Resources, Applications, and Promises

This comprehensive review aims to provide an overview of the current state of Healthcare Knowledge Graphs (HKGs), including their construction, utilization models, and applications across various healthcare and biomedical research domains. We thoroughly analyzed existing literature on HKGs, covering their construction methodologies, utilization techniques, and applications in basic science research, pharmaceutical research and development, clinical decision support, and public health. The review encompasses both model-free and model-based utilization approaches and the integration of HKGs with large language models (LLMs). We searched Google Scholar for relevant papers on HKGs and classified them into the following topics: HKG construction, HKG utilization, and their downstream applications in various domains. We also discussed their special challenges and the promise for future work. The review highlights the potential of HKGs to significantly impact biomedical research and clinical practice by integrating vast amounts of biomedical knowledge from multiple domains. The synergy between HKGs and LLMs offers promising opportunities for constructing more comprehensive knowledge graphs and improving the accuracy of healthcare applications. HKGs have emerged as a powerful tool for structuring medical knowledge, with broad applications across biomedical research, clinical decision-making, and public health. This survey serves as a roadmap for future research and development in the field of HKGs, highlighting the potential of combining knowledge graphs with advanced machine learning models for healthcare transformation.

cs.AI↗

arXiv2025

Newton-Okounkov polygons with a small number of vertices and Picard number

Newton-Okounkov bodies serve as a bridge between algebraic geometry and convex geometry, enabling the application of combinatorial and geometric methods to the study of linear systems on algebraic varieties. This paper contributes to understanding the algebro-geometric information encoded in the collection of all Newton-Okounkov bodies on a given surface, focusing on Newton-Okounkov polygons with few vertices and on elliptic K3 surfaces. Let S be an algebraic surface and mv(S) be the maximum number of vertices of the Newton-Okounkov bodies of S. We prove that mv(S) = 4 if and only if its Picard number ρ(S) is at least 2 and S contains no negative irreducible curve. Additionally, if S contains a negative curve, then ρ(S) = 2 if and only if mv(S) = 5. Furthermore, we provide an example involving two elliptic K3 surfaces to demonstrate that when ρ(S) \geq 3, mv(S) no longer determines the Picard number ρ(S).

math.AG↗

arXiv2025

Knowledge-Infused Prompting: Assessing and Advancing Clinical Text Data Generation with Large Language Models

Clinical natural language processing requires methods that can address domain-specific challenges, such as complex medical terminology and clinical contexts. Recently, large language models (LLMs) have shown promise in this domain. Yet, their direct deployment can lead to privacy issues and are constrained by resources. To address this challenge, we delve into synthetic clinical text generation using LLMs for clinical NLP tasks. We propose an innovative, resource-efficient approach, ClinGen, which infuses knowledge into the process. Our model involves clinical knowledge extraction and context-informed LLM prompting. Both clinical topics and writing styles are drawn from external domain-specific knowledge graphs and LLMs to guide data generation. Our extensive empirical study across 7 clinical NLP tasks and 16 datasets reveals that ClinGen consistently enhances performance across various tasks, effectively aligning the distribution of real datasets and significantly enriching the diversity of generated training instances. Our code is available at \url{https://github.com/ritaranx/ClinGen}.

cs.CL↗

arXiv2025

Leveraging Chain of Thought towards Empathetic Spoken Dialogue without Corresponding Question-Answering Data

Empathetic dialogue is crucial for natural human-computer interaction, allowing the dialogue system to respond in a more personalized and emotionally aware manner, improving user satisfaction and engagement. The emergence of large language models (LLMs) has revolutionized dialogue generation by harnessing their powerful capabilities and shown its potential in multimodal domains. Many studies have integrated speech with text-based LLMs to take speech question as input and output text response. However, the lack of spoken question-answering datasets that include speech style information to supervised fine-tuning (SFT) limits the performance of these systems. As a result, while these systems excel at understanding speech content, they often struggle to generate empathetic responses. In response, we propose a novel approach that circumvents the need for question-answering data, called Listen, Perceive, and Express (LPE). Our method employs a two-stage training process, initially guiding the LLM to listen the content and perceive the emotional aspects of speech. Subsequently, we utilize Chain-of-Thought (CoT) prompting to unlock the model's potential for expressing empathetic responses based on listened spoken content and perceived emotional cues. We employ experiments to prove the effectiveness of proposed method. To our knowledge, this is the first attempt to leverage CoT for speech-based dialogue.

cs.CL↗

arXiv2025

MiniMax-01: Scaling Foundation Models with Lightning Attention

We introduce MiniMax-01 series, including MiniMax-Text-01 and MiniMax-VL-01, which are comparable to top-tier models while offering superior capabilities in processing longer contexts. The core lies in lightning attention and its efficient scaling. To maximize computational capacity, we integrate it with Mixture of Experts (MoE), creating a model with 32 experts and 456 billion total parameters, of which 45.9 billion are activated for each token. We develop an optimized parallel strategy and highly efficient computation-communication overlap techniques for MoE and lightning attention. This approach enables us to conduct efficient training and inference on models with hundreds of billions of parameters across contexts spanning millions of tokens. The context window of MiniMax-Text-01 can reach up to 1 million tokens during training and extrapolate to 4 million tokens during inference at an affordable cost. Our vision-language model, MiniMax-VL-01 is built through continued training with 512 billion vision-language tokens. Experiments on both standard and in-house benchmarks show that our models match the performance of state-of-the-art models like GPT-4o and Claude-3.5-Sonnet while offering 20-32 times longer context window. We publicly release MiniMax-01 at https://github.com/MiniMax-AI.

cs.CL↗

arXiv2025

Quantum Circuits for the heat equation with physical boundary conditions via Schrodingerisation

This paper explores the explicit design of quantum circuits for quantum simulation of partial differential equations (PDEs) with physical boundary conditions. These equations and/or their discretized forms usually do not evolve via unitary dynamics, thus are not suitable for quantum simulation. Boundary conditions (either time-dependent or independent) make the problem more difficult. To tackle this challenge, the Schrodingerisation method can be employed, which converts linear partial and ordinary differential equations with non-unitary dynamics into systems of Schrodinger-type equations, via the so-called warped phase transformation that maps the equation into one higher dimension. Despite advancements in Schrodingerisation techniques, the explicit implementation of quantum circuits for solving general PDEs, especially with physical boundary conditions, remains underdeveloped. We present two methods for handling the inhomogeneous terms arising from time-dependent physical boundary conditions. One approach utilizes Duhamel's principle to express the solution in integral form and employs linear combination of unitaries (LCU) for coherent state preparation. Another method applies an augmentation to transform the inhomogeneous problem into a homogeneous one. We then apply the quantum simulation technique from [CJL23] to transform the resulting non-autonomous system to an autonomous system in one higher dimension. We provide detailed implementations of these two methods and conduct a comprehensive complexity analysis in terms of queries to the time evolution input oracle.

quant-ph↗

arXiv2025

InclusiViz: Visual Analytics of Human Mobility Data for Understanding and Mitigating Urban Segregation

Urban segregation refers to the physical and social division of people, often driving inequalities within cities and exacerbating socioeconomic and racial tensions. While most studies focus on residential spaces, they often neglect segregation across "activity spaces" where people work, socialize, and engage in leisure. Human mobility data offers new opportunities to analyze broader segregation patterns, encompassing both residential and activity spaces, but challenges existing methods in capturing the complexity and local nuances of urban segregation. This work introduces InclusiViz, a novel visual analytics system for multi-level analysis of urban segregation, facilitating the development of targeted, data-driven interventions. Specifically, we developed a deep learning model to predict mobility patterns across social groups using environmental features, augmented with explainable AI to reveal how these features influence segregation. The system integrates innovative visualizations that allow users to explore segregation patterns from broad overviews to fine-grained detail and evaluate urban planning interventions with real-time feedback. We conducted a quantitative evaluation to validate the model's accuracy and efficiency. Two case studies and expert interviews with social scientists and urban analysts demonstrated the system's effectiveness, highlighting its potential to guide urban planning toward more inclusive cities.

cs.HC↗

arXiv2024

Can Large Language Models Improve the Adversarial Robustness of Graph Neural Networks?

Graph neural networks (GNNs) are vulnerable to adversarial attacks, especially for topology perturbations, and many methods that improve the robustness of GNNs have received considerable attention. Recently, we have witnessed the significant success of large language models (LLMs), leading many to explore the great potential of LLMs on GNNs. However, they mainly focus on improving the performance of GNNs by utilizing LLMs to enhance the node features. Therefore, we ask: Will the robustness of GNNs also be enhanced with the powerful understanding and inference capabilities of LLMs? By presenting the empirical results, we find that despite that LLMs can improve the robustness of GNNs, there is still an average decrease of 23.1% in accuracy, implying that the GNNs remain extremely vulnerable against topology attacks. Therefore, another question is how to extend the capabilities of LLMs on graph adversarial robustness. In this paper, we propose an LLM-based robust graph structure inference framework, LLM4RGNN, which distills the inference capabilities of GPT-4 into a local LLM for identifying malicious edges and an LM-based edge predictor for finding missing important edges, so as to recover a robust graph structure. Extensive experiments demonstrate that LLM4RGNN consistently improves the robustness across various GNNs. Even in some cases where the perturbation ratio increases to 40%, the accuracy of GNNs is still better than that on the clean graph. The source code can be found in https://github.com/zhongjian-zhang/LLM4RGNN.

cs.LG↗

arXiv2024

A $C^0$-continuous nonconforming virtual element method for linear strain gradient elasticity

A robust $C^0$-continuous nonconforming virtual element method (VEM) is developed for a boundary value problem arising from strain gradient elasticity in two dimensions, with the family of polygonal meshes satisfying a very general geometric assumption given in Brezzi et al. (2009) and Chen and Huang (2018). The stability condition of the VEMs is derived by establishing Korn-type inequalities and inverse inequalities. Some crucial commutative relations for locking-free analysis as in elastic problems are derived. The sharp and uniform error estimates with respect to both the microscopic parameter and the Lamé coefficient are achieved in the lowest-order case, which is also verified by numerical results.

math.NA↗