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Yuhang Wang

Publications and source records attributed to Yuhang Wang.

At least 109 records · Page 6Linked to original sources

CDEval: A Benchmark for Measuring the Cultural Dimensions of Large Language Models

As the scaling of Large Language Models (LLMs) has dramatically enhanced their capabilities, there has been a growing focus on the alignment problem to ensure their responsible and ethical use. While existing alignment efforts predominantly concentrate on universal values such as the HHH principle, the aspect of culture, which is inherently pluralistic and diverse, has not received adequate attention. This work introduces a new benchmark, CDEval, aimed at evaluating the cultural dimensions of LLMs. CDEval is constructed by incorporating both GPT-4's automated generation and human verification, covering six cultural dimensions across seven domains. Our comprehensive experiments provide intriguing insights into the culture of mainstream LLMs, highlighting both consistencies and variations across different dimensions and domains. The findings underscore the importance of integrating cultural considerations in LLM development, particularly for applications in diverse cultural settings. Through CDEval, we aim to broaden the horizon of LLM alignment research by including cultural dimensions, thus providing a more holistic framework for the future development and evaluation of LLMs. This benchmark serves as a valuable resource for cultural studies in LLMs, paving the way for more culturally aware and sensitive models.

cs.CL↗

Improved Cryo-EM Pose Estimation and 3D Classification through Latent-Space Disentanglement

Due to the extremely low signal-to-noise ratio (SNR) and unknown poses (projection angles and image shifts) in cryo-electron microscopy (cryo-EM) experiments, reconstructing 3D volumes from 2D images is very challenging. In addition to these challenges, heterogeneous cryo-EM reconstruction requires conformational classification. In popular cryo-EM reconstruction algorithms, poses and conformation classification labels must be predicted for every input cryo-EM image, which can be computationally costly for large datasets. An emerging class of methods adopted the amortized inference approach. In these methods, only a subset of the input dataset is needed to train neural networks for the estimation of poses and conformations. Once trained, these neural networks can make pose/conformation predictions and 3D reconstructions at low cost for the entire dataset during inference. Unfortunately, when facing heterogeneous reconstruction tasks, it is hard for current amortized-inference-based methods to effectively estimate the conformational distribution and poses from entangled latent variables. Here, we propose a self-supervised variational autoencoder architecture called "HetACUMN" based on amortized inference. We employed an auxiliary conditional pose prediction task by inverting the order of encoder-decoder to explicitly enforce the disentanglement of conformation and pose predictions. Results on simulated datasets show that HetACUMN generated more accurate conformational classifications than other amortized or non-amortized methods. Furthermore, we show that HetACUMN is capable of performing heterogeneous 3D reconstructions of a real experimental dataset.

eess.IV↗

Dynamic Analyses of Contagion Risk and Module Evolution on the SSE A-Shares Market Based on Minimum Information Entropy

The interactive effect is significant in the Chinese stock market, exacerbating the abnormal market volatilities and risk contagion. Based on daily stock returns in the Shanghai Stock Exchange (SSE) A-shares, this paper divides the period between 2005 and 2018 into eight bull and bear market stages to investigate interactive patterns in the Chinese financial market. We employ the LASSO method to construct the stock network and further use the Map Equation method to analyze the evolution of modules in the SSE A-shares market. Empirical results show: (1) The connected effect is more significant in bear markets than bull markets; (2) A system module can be found in the network during the first four stages, and the industry aggregation effect leads to module differentiation in the last four stages; (3) Some stocks have leading effects on others throughout eight periods, and medium- and small-cap stocks with poor financial conditions are more likely to become risk sources, especially in bear markets. Our conclusions are beneficial to improving investment strategies and making regulatory policies.

econ.EM↗

AMBER: An LLM-free Multi-dimensional Benchmark for MLLMs Hallucination Evaluation

Despite making significant progress in multi-modal tasks, current Multi-modal Large Language Models (MLLMs) encounter the significant challenge of hallucinations, which may lead to harmful consequences. Therefore, evaluating MLLMs' hallucinations is becoming increasingly important in model improvement and practical application deployment. Previous works are limited in high evaluation costs (e.g., relying on humans or advanced LLMs) and insufficient evaluation dimensions (e.g., types of tasks and hallucinations). In this paper, we propose an LLM-free multi-dimensional benchmark AMBER, which can be used to evaluate both generative task and discriminative task including existence, attribute and relation hallucination. Based on AMBER, we design a low-cost and efficient evaluation pipeline. Additionally, we conduct a comprehensive evaluation and detailed analysis of mainstream MLLMs including GPT-4V(ision), and also give guideline suggestions for mitigating hallucinations. The data and code of AMBER are available at https://github.com/junyangwang0410/AMBER.

cs.CL↗

Improving Weak-to-Strong Generalization with Scalable Oversight and Ensemble Learning

This paper presents a follow-up study to OpenAI's recent superalignment work on Weak-to-Strong Generalization (W2SG). Superalignment focuses on ensuring that high-level AI systems remain consistent with human values and intentions when dealing with complex, high-risk tasks. The W2SG framework has opened new possibilities for empirical research in this evolving field. Our study simulates two phases of superalignment under the W2SG framework: the development of general superhuman models and the progression towards superintelligence. In the first phase, based on human supervision, the quality of weak supervision is enhanced through a combination of scalable oversight and ensemble learning, reducing the capability gap between weak teachers and strong students. In the second phase, an automatic alignment evaluator is employed as the weak supervisor. By recursively updating this auto aligner, the capabilities of the weak teacher models are synchronously enhanced, achieving weak-to-strong supervision over stronger student models.We also provide an initial validation of the proposed approach for the first phase. Using the SciQ task as example, we explore ensemble learning for weak teacher models through bagging and boosting. Scalable oversight is explored through two auxiliary settings: human-AI interaction and AI-AI debate. Additionally, the paper discusses the impact of improved weak supervision on enhancing weak-to-strong generalization based on in-context learning. Experiment code and dataset will be released at https://github.com/ADaM-BJTU/W2SG.

cs.CL↗

Recovering a Molecule's 3D Dynamics from Liquid-phase Electron Microscopy Movies

The dynamics of biomolecules are crucial for our understanding of their functioning in living systems. However, current 3D imaging techniques, such as cryogenic electron microscopy (cryo-EM), require freezing the sample, which limits the observation of their conformational changes in real time. The innovative liquid-phase electron microscopy (liquid-phase EM) technique allows molecules to be placed in the native liquid environment, providing a unique opportunity to observe their dynamics. In this paper, we propose TEMPOR, a Temporal Electron MicroscoPy Object Reconstruction algorithm for liquid-phase EM that leverages an implicit neural representation (INR) and a dynamical variational auto-encoder (DVAE) to recover time series of molecular structures. We demonstrate its advantages in recovering different motion dynamics from two simulated datasets, 7bcq and Cas9. To our knowledge, our work is the first attempt to directly recover 3D structures of a temporally-varying particle from liquid-phase EM movies. It provides a promising new approach for studying molecules' 3D dynamics in structural biology.

q-bio.QM↗

FFF: Fragments-Guided Flexible Fitting for Building Complete Protein Structures

Cryo-electron microscopy (cryo-EM) is a technique for reconstructing the 3-dimensional (3D) structure of biomolecules (especially large protein complexes and molecular assemblies). As the resolution increases to the near-atomic scale, building protein structures de novo from cryo-EM maps becomes possible. Recently, recognition-based de novo building methods have shown the potential to streamline this process. However, it cannot build a complete structure due to the low signal-to-noise ratio (SNR) problem. At the same time, AlphaFold has led to a great breakthrough in predicting protein structures. This has inspired us to combine fragment recognition and structure prediction methods to build a complete structure. In this paper, we propose a new method named FFF that bridges protein structure prediction and protein structure recognition with flexible fitting. First, a multi-level recognition network is used to capture various structural features from the input 3D cryo-EM map. Next, protein structural fragments are generated using pseudo peptide vectors and a protein sequence alignment method based on these extracted features. Finally, a complete structural model is constructed using the predicted protein fragments via flexible fitting. Based on our benchmark tests, FFF outperforms the baseline methods for building complete protein structures.

cs.CV↗

You talk what you read: Understanding News Comment Behavior by Dispositional and Situational Attribution

Many news comment mining studies are based on the assumption that comment is explicitly linked to the corresponding news. In this paper, we observed that users' comments are also heavily influenced by their individual characteristics embodied by the interaction history. Therefore, we position to understand news comment behavior by considering both the dispositional factors from news interaction history, and the situational factors from corresponding news. A three-part encoder-decoder framework is proposed to model the generative process of news comment. The resultant dispositional and situational attribution contributes to understanding user focus and opinions, which are validated in applications of reader-aware news summarization and news aspect-opinion forecasting.

cs.CL↗

Numerical Simulation of the Impact of Different Cushion Gases on Underground Hydrogen Storage in Aquifers Based on an Experimentally-Benchmarked Equation-of-State

Underground hydrogen storage (UHS) in geological formations is a promising technology for large-scale hydrogen energy storage. Although lessons were learned from similar studies, including geological carbon sequestration and underground gas storage, the unique thermodynamic and physical properties of hydrogen distinguish UHS from the other subsurface storage projects. We developed a two-phase, three components reservoir simulator, which incorporated essential physics based on the fully coupled multi-physics framework of the Delft Advanced Reservoir Simulation (DARSim). Hydrogen rich fingers were observed in the aqueous phase when CO2 was used as the cushion gas, because dissolved CO2 increased brine density, leading to density-driven downward convection which was favorable for hydrogen dissolution into the aqueous phase. The highest purity of produced hydrogen was observed when CO2 was used as the cushion gas, whereas using CH4 and N2 as the cushion gas was favorable for the hydrogen production rate and mobility. This work is the first study that utilizes an EoS based reservoir simulator to investigate hydrogen's flow patterns and interactions with cushion gases in an underground storage system. The developed reservoir simulation tool and research findings from this study will be valuable to support decision making in practical UHS projects.

physics.geo-ph↗

Towards Alleviating the Object Bias in Prompt Tuning-based Factual Knowledge Extraction

Many works employed prompt tuning methods to automatically optimize prompt queries and extract the factual knowledge stored in Pretrained Language Models. In this paper, we observe that the optimized prompts, including discrete prompts and continuous prompts, exhibit undesirable object bias. To handle this problem, we propose a novel prompt tuning method called MeCoD. consisting of three modules: Prompt Encoder, Object Equalization and Biased Object Obstruction. Experimental results show that MeCoD can significantly reduce the object bias and at the same time improve accuracy of factual knowledge extraction.

cs.IR↗

Towards Prompt-robust Face Privacy Protection via Adversarial Decoupling Augmentation Framework

Denoising diffusion models have shown remarkable potential in various generation tasks. The open-source large-scale text-to-image model, Stable Diffusion, becomes prevalent as it can generate realistic artistic or facial images with personalization through fine-tuning on a limited number of new samples. However, this has raised privacy concerns as adversaries can acquire facial images online and fine-tune text-to-image models for malicious editing, leading to baseless scandals, defamation, and disruption to victims' lives. Prior research efforts have focused on deriving adversarial loss from conventional training processes for facial privacy protection through adversarial perturbations. However, existing algorithms face two issues: 1) they neglect the image-text fusion module, which is the vital module of text-to-image diffusion models, and 2) their defensive performance is unstable against different attacker prompts. In this paper, we propose the Adversarial Decoupling Augmentation Framework (ADAF), addressing these issues by targeting the image-text fusion module to enhance the defensive performance of facial privacy protection algorithms. ADAF introduces multi-level text-related augmentations for defense stability against various attacker prompts. Concretely, considering the vision, text, and common unit space, we propose Vision-Adversarial Loss, Prompt-Robust Augmentation, and Attention-Decoupling Loss. Extensive experiments on CelebA-HQ and VGGFace2 demonstrate ADAF's promising performance, surpassing existing algorithms.

cs.CV↗

Boosted ab initio Cryo-EM 3D Reconstruction with ACE-EM

The central problem in cryo-electron microscopy (cryo-EM) is to recover the 3D structure from noisy 2D projection images which requires estimating the missing projection angles (poses). Recent methods attempted to solve the 3D reconstruction problem with the autoencoder architecture, which suffers from the latent vector space sampling problem and frequently produces suboptimal pose inferences and inferior 3D reconstructions. Here we present an improved autoencoder architecture called ACE (Asymmetric Complementary autoEncoder), based on which we designed the ACE-EM method for cryo-EM 3D reconstructions. Compared to previous methods, ACE-EM reached higher pose space coverage within the same training time and boosted the reconstruction performance regardless of the choice of decoders. With this method, the Nyquist resolution (highest possible resolution) was reached for 3D reconstructions of both simulated and experimental cryo-EM datasets. Furthermore, ACE-EM is the only amortized inference method that reached the Nyquist resolution.

cs.CV↗

The FluidFlower International Benchmark Study: Process, Modeling Results, and Comparison to Experimental Data

Successful deployment of geological carbon storage (GCS) requires an extensive use of reservoir simulators for screening, ranking and optimization of storage sites. However, the time scales of GCS are such that no sufficient long-term data is available yet to validate the simulators against. As a consequence, there is currently no solid basis for assessing the quality with which the dynamics of large-scale GCS operations can be forecasted. To meet this knowledge gap, we have conducted a major GCS validation benchmark study. To achieve reasonable time scales, a laboratory-size geological storage formation was constructed (the "FluidFlower"), forming the basis for both the experimental and computational work. A validation experiment consisting of repeated GCS operations was conducted in the FluidFlower, providing what we define as the true physical dynamics for this system. Nine different research groups from around the world provided forecasts, both individually and collaboratively, based on a detailed physical and petrophysical characterization of the FluidFlower sands. The major contribution of this paper is a report and discussion of the results of the validation benchmark study, complemented by a description of the benchmarking process and the participating computational models. The forecasts from the participating groups are compared to each other and to the experimental data by means of various indicative qualitative and quantitative measures. By this, we provide a detailed assessment of the capabilities of reservoir simulators and their users to capture both the injection and post-injection dynamics of the GCS operations.

physics.geo-ph↗

Kainate receptor modulation by NETO2

Glutamate-gated kainate receptors (KARs) are ubiquitous in the central nervous system of vertebrates, mediate synaptic transmission on post-synapse, and modulate transmitter release on pre-synapse. In the brain, the trafficking, gating kinetics, and pharmacology of KARs are tightly regulated by Neuropilin and tolloid-like proteins (Netos). Here we report cryo-EM structures of homo-tetrameric GluK2 in complex with Neto2 at inhibited and desensitized states, illustrating variable stoichiometry of GluK2-Neto2 complexes, with one or two Neto2 subunits associate with the GluK2. We find that Neto2 accesses only two broad faces of KARs, intermolecularly crosslinking the lower-lobe of ATDA/C, upper-lobe of LBDB/D, and lower-lobe of LBDA/C, illustrating how Neto2 regulates receptor-gating kinetics. The transmembrane helix of Neto2 is positioned proximal to the selectivity filter and competes with the amphiphilic H1-helix after M4 for interacting with an ICD formed by the M1-M2 linkers of the receptor, revealing how rectification is regulated by Neto2.

q-bio.BM↗

Simulation of CO2 Storage using a Parameterization Method for Essential Trapping Physics: FluidFlower Benchmark Study

An efficient compositional framework is developed for simulation of CO2 storage in saline aquifers during a full-cycle injection, migration and post-migration processes. Essential trapping mechanisms, including structural, dissolution, and residual trapping, which operate at different time scales are accurately captured in the presented unified framework. In particular, a parameterization method is proposed to efficiently describe the relevant physical processes. The proposed framework is validated by comparing the dynamics of gravity-induced convective transport with that reported in the literature. Results show good agreement for both the characteristics of descending fingers and the associated dissolution rate. The developed simulator is then applied to study the FluidFlower benchmark model. An experimental setup with heterogeneous geological layers is discretized into a two-dimensional computational domain where numerical simulation is performed. Impacts of hysteresis and the diffusion of CO2 in liquid phase on the migration and trapping of CO2 plume are investigated. Inclusion of the hysteresis effect does not affect plume migration in this benchmark model, whereas diffusion plays an important role in promoting convective mixing. This work casts a promising approach to predict the migration of the CO2 plume, and to assess the amount of trapping from different mechanisms for long-term CO2 storage.

physics.flu-dyn↗

Universal Backdoor Attacks Detection via Adaptive Adversarial Probe

Extensive evidence has demonstrated that deep neural networks (DNNs) are vulnerable to backdoor attacks, which motivates the development of backdoor attacks detection. Most detection methods are designed to verify whether a model is infected with presumed types of backdoor attacks, yet the adversary is likely to generate diverse backdoor attacks in practice that are unforeseen to defenders, which challenge current detection strategies. In this paper, we focus on this more challenging scenario and propose a universal backdoor attacks detection method named Adaptive Adversarial Probe (A2P). Specifically, we posit that the challenge of universal backdoor attacks detection lies in the fact that different backdoor attacks often exhibit diverse characteristics in trigger patterns (i.e., sizes and transparencies). Therefore, our A2P adopts a global-to-local probing framework, which adversarially probes images with adaptive regions/budgets to fit various backdoor triggers of different sizes/transparencies. Regarding the probing region, we propose the attention-guided region generation strategy that generates region proposals with different sizes/locations based on the attention of the target model, since trigger regions often manifest higher model activation. Considering the attack budget, we introduce the box-to-sparsity scheduling that iteratively increases the perturbation budget from box to sparse constraint, so that we could better activate different latent backdoors with different transparencies. Extensive experiments on multiple datasets (CIFAR-10, GTSRB, Tiny-ImageNet) demonstrate that our method outperforms state-of-the-art baselines by large margins (+12%).

cs.CV↗

Single Loop Gaussian Homotopy Method for Non-convex Optimization

The Gaussian homotopy (GH) method is a popular approach to finding better stationary points for non-convex optimization problems by gradually reducing a parameter value $t$, which changes the problem to be solved from an almost convex one to the original target one. Existing GH-based methods repeatedly call an iterative optimization solver to find a stationary point every time $t$ is updated, which incurs high computational costs. We propose a novel single loop framework for GH methods (SLGH) that updates the parameter $t$ and the optimization decision variables at the same. Computational complexity analysis is performed on the SLGH algorithm under various situations: either a gradient or gradient-free oracle of a GH function can be obtained for both deterministic and stochastic settings. The convergence rate of SLGH with a tuned hyperparameter becomes consistent with the convergence rate of gradient descent, even though the problem to be solved is gradually changed due to $t$. In numerical experiments, our SLGH algorithms show faster convergence than an existing double loop GH method while outperforming gradient descent-based methods in terms of finding a better solution.

math.OC↗

Multiple-GPU accelerated high-order gas-kinetic scheme for direct numerical simulation of compressible turbulence

High-order gas-kinetic scheme (HGKS) has become a workable tool for the direct numerical simulation (DNS) of turbulence. In this paper, to accelerate the computation, HGKS is implemented with the graphical processing unit (GPU) using the compute unified device architecture (CUDA). To conduct the much large-scale DNS of turbulence, HGKS also be further upgraded with multiple GPUs using message passing interface (MPI) and CUDA architecture. The benchmark cases for compressible turbulence, including Taylor-Green vortex and turbulent channel flows, are presented to assess the numerical performance of HGKS with Nvidia TITAN RTX and Tesla V100 GPUs. For single-GPU computation, compared with the parallel central processing unit (CPU) code running on the Intel Core i7-9700 with open multi-processing (OpenMP) directives, 7x speedup is achieved by TITAN RTX and 16x speedup is achieved by Tesla V100. For multiple-GPU computation, the computational time of parallel CPU code running on 1024 Intel Xeon E5-2692 cores with MPI is approximately 3 times longer than that of GPU code using 8 Tesla V100 GPUs with MPI and CUDA. Numerical results confirm the excellent performance of multiple-GPU accelerated HGKS for large-scale DNS of turbulence. HGKS in GPU is also compiled with FP32 precision to evaluate the effect of number formats precision. Reasonably, compared to the computation with FP64 precision, the efficiency is improved and the memory cost is reduced with FP32 precision. For turbulent channel flows, difference in long-time statistical turbulent quantities is acceptable between FP32 and FP64 precision solutions. While the obvious discrepancy in instantaneous turbulent quantities can be observed, which shows that FP32 precision is not safe for DNS in compressible turbulence. The choice of precision should depended on the requirement of accuracy and the available computational resources.

math.NA↗