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Yuhao Wang

Publications and source records attributed to Yuhao Wang.

At least 37 records · Page 2Linked to original sources
arXiv2026

BioM-JEPA: joint-embedding prediction of graph-connected gene blocks in single cells

Single-cell transcriptomes are sparse observations of coordinated biological programmes, yet most self-supervised models learn by reconstructing individual genes. Here we present BioM-JEPA, a joint-embedding predictive architecture that instead predicts aggregate representations of graph-connected gene blocks defined by protein-association and corpus-derived coexpression evidence. A student network infers each target-block representation from the remaining genes in a cell, while a slowly updated teacher supplies the corresponding target from the full observed gene set. Under the reported extraction procedure, block-level prediction produced embeddings with higher effective rank and weaker association with detected-gene depth in the tested diagnostics than token-prediction, random-block and reconstruction controls. Across CellBench tasks, frozen BioM-JEPA embeddings retained expression, pathway and neighbourhood information and achieved the lowest aggregate perturbation-response error among the evaluated models. Representation diagnostics were also consistent with canonical pancreatic programmes and compositional relationships between genetic perturbations. Linear attention avoids constructing a quadratic gene-by-gene attention matrix; in a matched one-epoch hPancreas experiment at batch size 8, BioM-JEPA provided 5.75-fold higher fine-tuning throughput and 3.76-fold higher held-out embedding throughput than scFoundation. Together, these results support graph-connected gene blocks as useful prediction units for JEPA-style representation learning in single-cell biology.

cs.LG↗
arXiv2026

Multi-Modal Object Re-Identification with Dual Semantic Guidance and Global-Local Mutual Modulation

Multi-modal object Re-Identification (ReID) aims to retrieve target instances by leveraging complementary information across modalities. However, existing methods suffer from two challenges. First, they often fail to exploit well-aligned and reliable semantic priors, making them vulnerable to background clutter and cross-modal misalignment. On the other hand, they typically rely on holistic feature modeling, overlooking the synergy between global and local representations. To overcome these limitations, we propose a robust multi-modal ReID framework with dual semantic guidance and global-local mutual modulation, which mainly consists of three key components, namely the Text-Semantic Injector (TSI), the Masked Global-Local Modulator (MGLM), and the Hierarchical MoE Fusion (HMF). The TSI enhances semantic awareness by integrating clean and coherent textual features into visual tokens. The MGLM enables part-aware cross-modal interaction through joint guidance from soft masks and global context, improving fine-grained feature alignment. Finally, the HMF adaptively aggregates multi-spectral features under local semantic supervision, yielding discriminative and robust representations. Extensive experiments on three multi-modal ReID benchmarks demonstrate the effectiveness of the proposed method. The code will be made publicly available at https://github.com/zw-absin/DSGM upon acceptance.

cs.CV↗
arXiv2026

Intrinsic Tangential Hadamard Differentiability of Rough-BSDE Solution Maps

We study first-order sensitivity of a scalar backward stochastic differential equation with a deterministic rough driver. The driver belongs to the nonlinear space of step-two weakly geometric $p$-rough paths, $2<p<3$, so an ordinary Banach-space difference quotient is not available. At a fixed rough path $x$, we use a weakly geometric, finite-$(p,p/2)$-variation tensor realization of the Qian-Tudor tangent structure, represented intrinsically by a first-level direction $h$ and a compatible second-level direction $κ$. Admissible rough-path secants are required to converge in a strong levelwise variation topology. Under bounded smooth rough vector fields, a bounded terminal condition, and a globally Lipschitz generator, we construct a continuous linear map $A_x:T_x^p\to S^\infty\times H^2_{\mathrm{BMO}}$. The proof first establishes a uniform four-jet expansion for reset rough flows along bounded realizations of full rough tangents. A Doss-Sussmann transformation transfers this expansion to quadratic generators. Uniform BMO and reverse-Holder estimates then yield a local difference-quotient theorem, which is propagated over a fixed deterministic partition and reconstructed in the original coordinates. The resulting derivative is independent of the joint lift, central decomposition, and radial realization. Consequently, solution difference quotients converge to $A_x(h,κ)$ for varying directions and arbitrary admissible secants with strong levelwise variation contact. This is intrinsic tangential Hadamard differentiability on that tensor-coordinate tangent class. Locally bounded ray-homogeneous selections give Frechet-differentiable chart pullbacks at the parameter origin. The latter statement is chartwise; it is not Frechet differentiability of the solution map in the homogeneous rough-path metric.

math.PR↗
arXiv2026

LaP-Forensics: Latent-Pixel Consistency Guided Multimodal Reasoning for Deepfake Detection

Recent generative models can produce images with few obvious visual artifacts, weakening detectors and explanations that rely only on surface appearance. We present LaP-Forensics, a multimodal framework that augments RGB semantics with reconstruction-based forensic evidence. A frozen Stable Diffusion DDIM inversion-reconstruction model provides a fixed reconstruction reference, and its residual map measures local compatibility with that reference. Independent projectors encode the RGB image and residual map before a structured Where-What-Why model predicts a textual analysis and an artifact mask.Supervised fine-tuning is followed by Group Relative Policy Optimization (GRPO), whose reward combines mask overlap with output-structure and evidence-reference terms. These text-side terms encourage the model to refer to the consistency map but do not constitute a verifier of free-form textual truth. A separate image-level head fuses RGB and DDIM-residual class features. Experiments show cross-generator detection on UniversalFakeDetect and competitive artifact localization on the official SynthScars benchmark. Controlled cue-construction, inversion-horizon, component, reward-term, and counterfactual analyses support the utility of the residual stream under the evaluated settings, while free-form textual faithfulness and reliability under post-processing remain open limitations.

cs.CV↗
arXiv2026

Multi-Modal Object Re-Identification with Prompt-S6 and Semantic-Aware Knowledge Guidance

Multi-modal object Re-Identification (ReID) aims to retrieve specific objects by integrating complementary information from multiple modalities. However, existing multi-modal ReID methods do not effectively address background interference suppression or achieve tri-modal alignment, instead focusing on pairwise feature fusion. Moreover, many current aggregation approaches suffer from high computational complexity. To address these limitations, we propose PRISM, a novel multi-modal ReID framework built upon Prompt-S6 (PS6) and semantic-aware knowledge guidance. PS6 maintains the linear complexity and strong sequence modeling capability of Mamba while enabling efficient cross-modal interaction. Leveraging these advantages, we design two key components: Semantic-Driven Token Pruning (SDTP) and Progressive Fusion Network (PFN). Parsing semantic priors from the segmentation foundation models, the SDTP then leverages these priors and applies dynamic token pruning to suppress background noise and refine feature representations. The PFN progressively aggregates multi-modal features to achieve tri-modal alignment and fully exploit modality complementarity. With the proposed modules, PRISM generates more robust multi-modal representations under complex scenarios. Extensive experiments on four multi-modal object ReID benchmarks demonstrate the effectiveness and efficiency of our approach. The source code is available at https://github.com/zw-absin/PRISM.

cs.CV↗
arXiv2026

TeaRAG: A Token-Efficient Agentic Retrieval-Augmented Generation Framework

Retrieval-Augmented Generation (RAG) utilizes external knowledge to augment Large Language Models' (LLMs) reliability. For flexibility, agentic RAG employs autonomous, multi-round retrieval and reasoning to resolve queries. Although recent agentic RAG has improved via reinforcement learning, they often incur substantial token overhead from search and reasoning processes. This trade-off prioritizes accuracy over efficiency. To address this issue, this work proposes TeaRAG, a token-efficient agentic RAG framework capable of compressing both retrieval content and reasoning steps. 1) First, the retrieved content is compressed by augmenting chunk-based semantic retrieval with a graph retrieval using concise triplets. A knowledge association graph is then built from semantic similarity and co-occurrence. Finally, Personalized PageRank is leveraged to highlight key knowledge within this graph, reducing the number of tokens per retrieval. 2) Besides, to reduce reasoning steps, Iterative Process-aware Direct Preference Optimization (IP-DPO) is proposed. Specifically, our reward function evaluates the knowledge sufficiency by a knowledge matching mechanism, while penalizing excessive reasoning steps. This design can produce high-quality preference-pair datasets, supporting iterative DPO to improve reasoning conciseness. Across six datasets, TeaRAG improves the average Exact Match by 4% and 2% while reducing output tokens by 61% and 59% on Llama3-8B-Instruct and Qwen2.5-14B-Instruct, respectively. Code is available at https://github.com/Applied-Machine-Learning-Lab/TeaRAG.

cs.IR↗
arXiv2026

VISTA-Bench: Do Vision-Language Models Really Understand Visualized Text as Well as Pure Text?

Vision-Language Models (VLMs) have achieved impressive performance in cross-modal understanding across textual and visual inputs, yet existing benchmarks predominantly focus on pure-text queries. In real-world scenarios, language also frequently appears as visualized text embedded in images, raising the question of whether current VLMs handle such input requests comparably. We introduce VISTA-Bench, a systematic benchmark from multimodal perception, reasoning, to unimodal understanding domains. It evaluates visualized text understanding by contrasting pure-text and visualized-text questions under controlled rendering conditions. Extensive evaluation of over 30 representative VLMs reveals a pronounced modality gap: models that perform well on pure-text queries often degrade substantially when equivalent semantic content is presented as visualized text. This gap is further amplified by increased perceptual difficulty, highlighting sensitivity to rendering variations despite unchanged semantics. Overall, VISTA-Bench provides a principled evaluation framework to diagnose this limitation and to guide progress toward more unified language representations across tokenized text and pixels. The source dataset and code are publicly available at https://github.com/QingAnLiu/VISTA-Bench.

cs.CV↗
arXiv2026

Wavenumber-explicit stability and preasymptotic error analysis of UPML finite element method for obstacle scattering problems

This paper develops a wavenumber-explicit stability and preasymptotic error analysis for finite element approximation of the two-dimensional Helmholtz scattering problem with a uniaxial perfectly matched layer (UPML) truncation. The analysis is based on direct estimates of the stretched Green kernel associated with the Cartesian complex coordinate transformation. We establish explicit stability for the truncated UPML problem. In particular, we prove that the inf-sup constant of the truncated UPML formulation is $μ_L = O(k^{-1})$ in a natural $k$-weighted $H^1$ norm. As a consequence, we also obtain an exponential decay estimate for the PML truncation error. Based on this stability estimate, we formulate a linear continuous interior penalty finite element method (CIP-FEM) on the truncated UPML domain. A key ingredient of the analysis is to establish a piecewise $H^{1+s}$-regularity result (for any $0<s<1$), which accounts for coefficient jumps across PML interfaces and singularities induced by Cartesian corner geometries. This fractional regularity is sufficient to derive wavenumber-explicit preasymptotic error estimates. Numerical experiments confirm the theoretical predictions and illustrate the effectiveness of the UPML CIP-FEM in the high-frequency regime.

math.NA↗
arXiv2026

Empowering Cross-Domain Sequential Recommendation with Hybrid Tokenization and Serial-Parallel Decoding

Cross-domain sequential recommendation (CDSR) aims to model users' dynamic interest transitions and sequential patterns across multiple domains. Recently, generative recommendation (GR) has emerged. It first learns semantic identifiers (SIDs) from item semantics and formulates recommendation as autoregressive generation. However, existing methods face two critical issues: (1) they ignore collaborative correlations across domains during tokenization, and (2) they adopt inefficient decoding strategies, such as beam search, during generation, which hinders real-time deployment. To address these limitations, we propose GenCDSR, an effective and efficient generative framework for CDSR. Specifically, we design a cross-domain hybrid tokenization mechanism with a multi-tower architecture to jointly capture cross-domain commonalities and domain-specific distinctions through hierarchical shared-specific and fine-grained codebooks. Furthermore, we develop a cross-domain serial-parallel decoding strategy that leverages the hierarchical SID structure to partially parallelize generation, significantly reducing inference latency while preserving generation consistency. Experiments on three public datasets show that GenCDSR achieves an average accuracy improvement of 1.5 percent and an average inference latency reduction of 85.1 percent compared with state-of-the-art baselines. The implementation code and datasets are available online: https://github.com/Applied-Machine-Learning-Lab/RecSys2026_GenCDSR.

cs.AI↗
arXiv2026

Whole-Body Semantic-to-Actuation Grounding of Elephant-Inspired Soft-Trunk Motion via Lightweight Flow Matching

For close-contact human-robot interaction (HRI), trunk-like continuum manipulators provide a physical channel for diverse whole-body expression, but grounding open-vocabulary responses into such robots is difficult: end-effector motion underspecifies body shape, whereas direct whole-body commands are high-dimensional and hard to keep feasible. We propose a whole-body semantic-to-actuation grounding framework for elephant-inspired soft-trunk HRI based on lightweight flow matching. The framework converts responses from a multimodal large language model into bounded, morphology-aligned intent-intensity tuples, parameterizes tendon-actuation trajectories with compact Catmull-Rom spline controls, and uses a rectified-flow generator to sample feasible whole-body trunk motions. Experiments show that the proposed framework improves held-out grounding correctness from 25.0% to 77.2% over a raw-response dense-regression baseline. Compared with a denoising-diffusion baseline, it improves correctness from 71.9% to 77.2% and reduces inference time from 7.86 ms to 4.87 ms while preserving motion diversity. A 100-participant physical HRI study further shows that adding the generated soft-trunk motion channel increases the positive overall-satisfaction rating from 46% to 82% over the audiovisual-only baseline.

cs.RO↗
arXiv2026

ERA: Entropy-Guided Visual Token Pruning with Rectified Attention for Efficient MLLMs

Multimodal Large Language Models (MLLMs) incur prohibitive inference costs due to long visual token sequences. Training-free visual token reduction provides an efficient solution. However, existing methods distort attention distributions, giving rise to a phenomenon we term Attention Logit Collapse. To address this issue, we propose ERA, an Entropy-guided visual token pruning framework with Rectified Attention for efficient MLLMs. Specifically, ERA comprises three crucial components: Dual-view Entropy Pruning (DEP), Bias-aware Token Recycling (BTR), and Logit-preserving Attention Rectification (LAR). First, DEP identifies representative anchor tokens by jointly modeling visual diversity and head-wise saliency. BTR then recycles pruned tokens into their corresponding anchors while estimating a cluster-level logit bias. Building upon this, LAR injects the estimated bias into attention logits, effectively rectifying the collapse induced by token reduction. Together, these components preserve visual evidence even under aggressive compression, enabling robust performance across single-image, multi-image, and video settings on a wide range of MLLMs. Beyond delivering practical acceleration, ERA establishes logit-preserving visual token pruning as a principled framework for efficient MLLMs, unifying theoretical foundation, algorithmic design, and practical deployment. The code is at https://github.com/924973292/ERA.

cs.CV↗
arXiv2026

Presence versus absence of charging energies in PbTe quantum dots

Charging energy ($E_C$) is essential in quantum dot (QD) devices. Previous studies on PbTe QDs have reported both the presence and absence of $E_C$. To resolve this ambiguity, we vary the QD size, i.e. the cross-sectional area of PbTe nanowires, and track the evolution of $E_C$. For large crosssectional areas ($\sim$ 16000 nm$^2$), the PbTe QDs exhibit no measurable $E_C$, while quantized levels are well resolved. Decreasing this area successively to 5000, 1500, and 460 nm$^2$, $E_C$ becomes finite and increases to 80, 160, and 210 $μ$eV, respectively. We further demonstrate the strong tunability of local gates, which can tune the PbTe device from the QD regime to the regime of ballistic transport. These results address concerns regarding the large dielectric constant of PbTe and provide key insights in engineering advanced PbTe quantum devices.

cond-mat.mes-hall↗
arXiv2026

Flow-polarity decoupling and universal mobility enhancement in dense bacterial active fluids with mesoscale order

Active fluids consisting of living cells or synthetic microswimmers display rich emergent behavior and nonequilibrium mechanical properties, which not only shed light on various biological processes but also inform the engineering of autonomous fluidics and self-driven materials. The individual behavior of microswimmers and their interaction with self-generated mesoscale solvent flows underlie the emergent properties of active fluids. Here we studied the microscopic dynamics in dense 3D bacterial active fluids by simultaneous imaging of cell body, flagella, and flow field. A surprising finding is that the polarity of cells was randomly distributed in mesoscale flow regimes, and yet the system displays mesoscale order in the self-generated solvent flows. Despite the apparent flow-polarity decoupling, the motion of cells relative to local solvent flows predominantly navigated upstream, with the self-advection speed universally enhanced by a flow-controlled constant. Numerical modeling with full hydrodynamic interactions reveals that the observed flow-polarity decoupling arises from the breakdown of the commonly held force-dipole assumption for anisotropic microswimmers: in the presence of flow gradient and near-field hydrodynamic interactions, the direction of total active forcing exerted by a swimming bacterium to the surrounding fluid no longer aligns with its polarity. The simulations suggest that near-field interactions serve as a new type of emergent, configuration-dependent active forcing, which profoundly impact self-organization and transport in dense bacterial suspensions. Taken together, our work establishes fundamental knowledge for faithfully understanding the collective behavior of dense polar active fluids.

physics.bio-ph↗
arXiv2026

MotionAtlas: Detailed Region Captioning for Motion-Centric Videos

We propose MotionAtlas, a system for detailed captioning of motion-centric videos, comprising (1) a dedicated human-annotated benchmark, (2) a scalable, high-quality pipeline to construct training samples, and (3) a family of powerful Video-MLLMs. Unlike conventional global motion captioning datasets, we focus on region-aware motion captioning: given a video and a spatiotemporal mask, the model generates precise descriptions of motion within the target region, thereby alleviating visual clutter and motion entanglement and enabling reliable, quantifiable evaluation. Concretely, we first build MotionAtlas-Bench, a comprehensive benchmark comprising 2,073 multiple-choice questions, meticulously annotated for a curated set of high-quality, motion-centric videos, to evaluate fine-grained motion understanding of the objects in question. Second, we design a rigorous and scalable data pipeline that leverages self-bootstrap refinement to suppress fine-grained hallucinations, yielding 159k high-quality motion captioning data. Third, we design a tailored training data composition strategy, which achieves consistent and substantial performance gains across diverse baseline Video-MLLMs, including Molmo2 and Qwen3-VL. For instance, MotionAtlas-4B surpasses Qwen3-VL-4B by an average of 5.2 percentage points across general motion benchmarks. The benchmark, dataset, and code have been released.

cs.CV↗
arXiv2026

DeepResearch-9K: A Challenging Benchmark Dataset of Deep-Research Agent

Deep-research agents are capable of executing multi-step web exploration, targeted retrieval, and sophisticated question answering. Despite their powerful capabilities, deep-research agents face two critical bottlenecks: (1) the lack of large-scale, challenging datasets with real-world difficulty, and (2) the absence of accessible, open-source frameworks for data synthesis and agent training. To bridge these gaps, we first construct DeepResearch-9K, a large-scale challenging dataset specifically designed for deep-research scenarios built from open-source multi-hop question-answering (QA) datasets via a low-cost autonomous pipeline. Notably, it consists of (1) 9000 questions spanning three difficulty levels from L1 to L3 (2) high-quality search trajectories with reasoning chains from Tongyi-DeepResearch-30B-A3B, a state-of-the-art deep-research agent, and (3) verifiable answers. Furthermore, we develop an open-source training framework DeepResearch-R1 that supports (1) multi-turn web interactions, (2) different reinforcement learning (RL) approaches, and (3) different reward models such as rule-based outcome reward and LLM-as-judge feedback. Finally, empirical results demonstrate that agents trained on DeepResearch-9K under our DeepResearch-R1 achieve state-of-the-art results on challenging deep-research benchmarks. We release the DeepResearch-9K dataset on https://huggingface.co/datasets/artillerywu/DeepResearch-9K and the code of DeepResearch-R1 on https://github.com/Applied-Machine-Learning-Lab/DeepResearch-R1.

cs.AI↗
arXiv2026

PerceptionDLM: Parallel Region Perception with Multimodal Diffusion Language Models

Multimodal large language models (MLLMs) have achieved remarkable progress in visual understanding tasks. However, most existing MLLMs rely on autoregressive generation, which limits their efficiency for perception tasks that require captioning multiple regions. In this work, we propose PerceptionDLM, a multimodal diffusion language model optimized for efficient parallel region perception. Built upon PerceptionDLM-Base, a strong foundational baseline that achieves state-of-the-art performance among open-source diffusion MLLMs, our architecture fully leverages the parallel decoding nature of DLMs. Specifically, we introduce efficient prompting and structured attention masking to enable simultaneous perception of multiple masked regions, allowing the model to generate region descriptions in parallel at both the sequence and token levels. This design significantly improves inference efficiency compared with existing approaches that process regions sequentially. To systematically evaluate the parallelism property of visual perception capability for DLMs, we construct a new Parallel Detailed Localized Captioning Benchmark (ParaDLC-Bench) by scaling the DLC-Bench to include multiple region masks per image, enabling joint evaluation of both caption quality and inference efficiency. Experiments demonstrate that PerceptionDLM maintains competitive performance in region captioning while achieving substantial speed improvements for multi-region perception tasks. Our results highlight the potential of multimodal diffusion language models for efficient, parallel visual perception. To the best of our knowledge, we are the first to achieve parallel region caption and perception by leveraging the advantages of diffusion language models. Code, models, and datasets are released.

cs.CV↗
arXiv2026

Optimal structure learning and conditional independence testing

We establish a fundamental connection between optimal structure learning and optimal conditional independence testing by showing that the minimax optimal rate for structure learning problems is determined by the minimax rate for conditional independence testing in these problems. This is accomplished by establishing a general reduction between these two problems in the case of poly-forests, and demonstrated by deriving optimal rates for several examples, including Bernoulli, Gaussian and nonparametric models. Furthermore, we show that the optimal algorithm in these settings is a suitable modification of the PC algorithm. This theoretical finding provides a unified framework for analyzing the statistical complexity of structure learning through the lens of minimax testing.

math.ST↗
arXiv2026

3D-CoS: A New 3D Reconstruction Paradigm Based on VLM Code Synthesis

Most recent 3D reconstruction and editing systems operate on implicit and explicit representations such as NeRF, point clouds, or meshes. While these representations enable high-fidelity rendering, they are fundamentally low-level and hard to control programmatically. In contrast, we propose and systematically evaluate a new 3D reconstruction paradigm, 3D Code Synthesis (3D-CoS), where 3D assets are constructed as executable Blender code, a programmatic and interpretable medium. To assess how well current VLMs can use code to represent 3D objects, we evaluate representative open-source and closed-source VLMs in code-based reconstruction under a unified protocol. We further introduce a suite of structured code-synthesis workflows, including blueprint-based planning, Retrieval-Augmented Generation (RAG) over Blender API documentation, few-shot geometric demonstrations, and a component-level Agent workflow for part-wise code generation. To demonstrate the unique advantages of this representation, we further evaluate localized text-driven modifications and compare our code-based edits with a point-cloud-based 3D editing baseline. Our study shows that code as a 3D representation offers strong controllability and locality, yielding stronger edit fidelity and better preservation of unedited regions in our targeted editing evaluation. Our work also analyzes the potential of this paradigm, delineates the current capability frontier of VLMs for programmatic 3D modeling, and highlights code synthesis as a promising direction for editable 3D reconstruction.

cs.CV↗