arXiv subjects

Yujia Zheng

Publications and source records attributed to Yujia Zheng.

At least 37 records · Page 2Linked to original sources

arXiv2026

Diverse Dictionary Learning

Given only observational data $X = g(Z)$, where both the latent variables $Z$ and the generating process $g$ are unknown, recovering $Z$ is ill-posed without additional assumptions. Existing methods often assume linearity or rely on auxiliary supervision and functional constraints. However, such assumptions are rarely verifiable in practice, and most theoretical guarantees break down under even mild violations, leaving uncertainty about how to reliably understand the hidden world. To make identifiability actionable in the real-world scenarios, we take a complementary view: in the general settings where full identifiability is unattainable, what can still be recovered with guarantees, and what biases could be universally adopted? We introduce the problem of diverse dictionary learning to formalize this view. Specifically, we show that intersections, complements, and symmetric differences of latent variables linked to arbitrary observations, along with the latent-to-observed dependency structure, are still identifiable up to appropriate indeterminacies even without strong assumptions. These set-theoretic results can be composed using set algebra to construct structured and essential views of the hidden world, such as genus-differentia definitions. When sufficient structural diversity is present, they further imply full identifiability of all latent variables. Notably, all identifiability benefits follow from a simple inductive bias during estimation that can be readily integrated into most models. We validate the theory and demonstrate the benefits of the bias on both synthetic and real-world data.

cs.LG↗

arXiv2026

SmartCLIP: Modular Vision-language Alignment with Identification Guarantees

Contrastive Language-Image Pre-training (CLIP)~\citep{radford2021learning} has emerged as a pivotal model in computer vision and multimodal learning, achieving state-of-the-art performance at aligning visual and textual representations through contrastive learning. However, CLIP struggles with potential information misalignment in many image-text datasets and suffers from entangled representation. On the one hand, short captions for a single image in datasets like MSCOCO may describe disjoint regions in the image, leaving the model uncertain about which visual features to retain or disregard. On the other hand, directly aligning long captions with images can lead to the retention of entangled details, preventing the model from learning disentangled, atomic concepts -- ultimately limiting its generalization on certain downstream tasks involving short prompts. In this paper, we establish theoretical conditions that enable flexible alignment between textual and visual representations across varying levels of granularity. Specifically, our framework ensures that a model can not only \emph{preserve} cross-modal semantic information in its entirety but also \emph{disentangle} visual representations to capture fine-grained textual concepts. Building on this foundation, we introduce \ours, a novel approach that identifies and aligns the most relevant visual and textual representations in a modular manner. Superior performance across various tasks demonstrates its capability to handle information misalignment and supports our identification theory. The code is available at https://github.com/Mid-Push/SmartCLIP.

cs.CV↗

arXiv2026

ParamMem: Augmenting Language Agents with Parametric Reflective Memory

Self-reflection enables language agents to iteratively refine solutions, yet often produces repetitive outputs that limit reasoning performance. Recent studies have attempted to address this limitation through various approaches, among which increasing reflective diversity has shown promise. Our empirical analysis reveals a strong positive correlation between reflective diversity and task success, further motivating the need for diverse reflection signals. We introduce ParamMem, a parametric memory module that encodes cross-sample reflection patterns into model parameters, enabling diverse reflection generation through temperature-controlled sampling. Building on this module, we propose ParamAgent, a reflection-based agent framework that integrates parametric memory with episodic and cross-sample memory. Extensive experiments on code generation, mathematical reasoning, and multi-hop question answering demonstrate consistent improvements over state-of-the-art baselines. Further analysis reveals that ParamMem is sample-efficient, enables weak-to-strong transfer across model scales, and supports self-improvement without reliance on stronger external model, highlighting the potential of ParamMem as an effective component for enhancing language agents.

cs.LG↗

arXiv2026

Emerging from Ground: Addressing Intent Deviation in Tool-Using Agents via Deriving Real Calls into Virtual Trajectories

LLMs have advanced tool-using agents for real-world applications, yet they often lead to unexpected behaviors or results. Beyond obvious failures, the subtle issue of "intent deviation" severely hinders reliable evaluation and performance improvement. Existing post-training methods generally leverage either real system samples or virtual data simulated by LLMs. However, the former is costly due to reliance on hand-crafted user requests, while the latter suffers from distribution shift from the real tools in the wild. Additionally, both methods lack negative samples tailored to intent deviation scenarios, hindering effective guidance on preference learning. We introduce RISE, a "Real-to-Virtual" method designed to mitigate intent deviation. Anchoring on verified tool primitives, RISE synthesizes virtual trajectories and generates diverse negative samples through mutation on critical parameters. With synthetic data, RISE fine-tunes backbone LLMs via the two-stage training for intent alignment. Evaluation results demonstrate that data synthesized by RISE achieve promising results in eight metrics covering user requires, execution trajectories and agent responses. Integrating with training, RISE achieves an average 35.28% improvement in Acctask (task completion) and 23.27% in Accintent (intent alignment), outperforming SOTA baselines by 1.20--42.09% and 1.17--54.93% respectively.

cs.AI↗

arXiv2026

LLM Interpretability with Identifiable Temporal-Instantaneous Representation

Despite Large Language Models' remarkable capabilities, understanding their internal representations remains challenging. Mechanistic interpretability tools such as sparse autoencoders (SAEs) were developed to extract interpretable features from LLMs but lack temporal dependency modeling, instantaneous relation representation, and more importantly theoretical guarantees, undermining both the theoretical foundations and the practical confidence necessary for subsequent analyses. While causal representation learning (CRL) offers theoretically grounded approaches for uncovering latent concepts, existing methods cannot scale to LLMs' rich conceptual space due to inefficient computation. To bridge the gap, we introduce an identifiable temporal causal representation learning framework specifically designed for LLMs' high-dimensional concept space, capturing both time-delayed and instantaneous causal relations. Our approach provides theoretical guarantees and demonstrates efficacy on synthetic datasets scaled to match real-world complexity. By extending SAE techniques with our temporal causal framework, we successfully discover meaningful concept relationships in LLM activations. Our findings show that modeling both temporal and instantaneous conceptual relationships advances the interpretability of LLMs.

cs.LG↗

arXiv2025

A Survey of Vibe Coding with Large Language Models

The advancement of large language models (LLMs) has catalyzed a paradigm shift from code generation assistance to autonomous coding agents, enabling a novel development methodology termed "Vibe Coding" where developers validate AI-generated implementations through outcome observation rather than line-by-line code comprehension. Despite its transformative potential, the effectiveness of this emergent paradigm remains under-explored, with empirical evidence revealing unexpected productivity losses and fundamental challenges in human-AI collaboration. To address this gap, this survey provides the first comprehensive and systematic review of Vibe Coding with large language models, establishing both theoretical foundations and practical frameworks for this transformative development approach. Drawing from systematic analysis of over 1000 research papers, we survey the entire vibe coding ecosystem, examining critical infrastructure components including LLMs for coding, LLM-based coding agent, development environment of coding agent, and feedback mechanisms. We first introduce Vibe Coding as a formal discipline by formalizing it through a Constrained Markov Decision Process that captures the dynamic triadic relationship among human developers, software projects, and coding agents. Building upon this theoretical foundation, we then synthesize existing practices into five distinct development models: Unconstrained Automation, Iterative Conversational Collaboration, Planning-Driven, Test-Driven, and Context-Enhanced Models, thus providing the first comprehensive taxonomy in this domain. Critically, our analysis reveals that successful Vibe Coding depends not merely on agent capabilities but on systematic context engineering, well-established development environments, and human-agent collaborative development models.

cs.AI↗

arXiv2025

Higher-Order Causal Structure Learning with Additive Models

Causal structure learning has long been the central task of inferring causal insights from data. Despite the abundance of real-world processes exhibiting higher-order mechanisms, however, an explicit treatment of interactions in causal discovery has received little attention. In this work, we focus on extending the causal additive model (CAM) to additive models with higher-order interactions. This second level of modularity we introduce to the structure learning problem is most easily represented by a directed acyclic hypergraph which extends the DAG. We introduce the necessary definitions and theoretical tools to handle the novel structure we introduce and then provide identifiability results for the hyper DAG, extending the typical Markov equivalence classes. We next provide insights into why learning the more complex hypergraph structure may actually lead to better empirical results. In particular, more restrictive assumptions like CAM correspond to easier-to-learn hyper DAGs and better finite sample complexity. We finally develop an extension of the greedy CAM algorithm which can handle the more complex hyper DAG search space and demonstrate its empirical usefulness in synthetic experiments.

cs.LG↗

arXiv2025

Thought Communication in Multiagent Collaboration

Natural language has long enabled human cooperation, but its lossy, ambiguous, and indirect nature limits the potential of collective intelligence. While machines are not subject to these constraints, most LLM-based multi-agent systems still rely solely on natural language, exchanging tokens or their embeddings. To go beyond language, we introduce a new paradigm, thought communication, which enables agents to interact directly mind-to-mind, akin to telepathy. To uncover these latent thoughts in a principled way, we formalize the process as a general latent variable model, where agent states are generated by an unknown function of underlying thoughts. We prove that, in a nonparametric setting without auxiliary information, both shared and private latent thoughts between any pair of agents can be identified. Moreover, the global structure of thought sharing, including which agents share which thoughts and how these relationships are structured, can also be recovered with theoretical guarantees. Guided by the established theory, we develop a framework that extracts latent thoughts from all agents prior to communication and assigns each agent the relevant thoughts, along with their sharing patterns. This paradigm naturally extends beyond LLMs to all modalities, as most observational data arise from hidden generative processes. Experiments on both synthetic and real-world benchmarks validate the theory and demonstrate the collaborative advantages of thought communication. We hope this work illuminates the potential of leveraging the hidden world, as many challenges remain unsolvable through surface-level observation alone, regardless of compute or data scale.

cs.LG↗

arXiv2025

Understanding Catastrophic Interference: On the Identifibility of Latent Representations

Catastrophic interference, also known as catastrophic forgetting, is a fundamental challenge in machine learning, where a trained learning model progressively loses performance on previously learned tasks when adapting to new ones. In this paper, we aim to better understand and model the catastrophic interference problem from a latent representation learning point of view, and propose a novel theoretical framework that formulates catastrophic interference as an identification problem. Our analysis demonstrates that the forgetting phenomenon can be quantified by the distance between partial-task aware (PTA) and all-task aware (ATA) setups. Building upon recent advances in identifiability theory, we prove that this distance can be minimized through identification of shared latent variables between these setups. When learning, we propose our method \ourmeos with two-stage training strategy: First, we employ maximum likelihood estimation to learn the latent representations from both PTA and ATA configurations. Subsequently, we optimize the KL divergence to identify and learn the shared latent variables. Through theoretical guarantee and empirical validations, we establish that identifying and learning these shared representations can effectively mitigate catastrophic interference in machine learning systems. Our approach provides both theoretical guarantees and practical performance improvements across both synthetic and benchmark datasets.

cs.LG↗

arXiv2025

Nonparametric Identification of Latent Concepts

We are born with the ability to learn concepts by comparing diverse observations. This helps us to understand the new world in a compositional manner and facilitates extrapolation, as objects naturally consist of multiple concepts. In this work, we argue that the cognitive mechanism of comparison, fundamental to human learning, is also vital for machines to recover true concepts underlying the data. This offers correctness guarantees for the field of concept learning, which, despite its impressive empirical successes, still lacks general theoretical support. Specifically, we aim to develop a theoretical framework for the identifiability of concepts with multiple classes of observations. We show that with sufficient diversity across classes, hidden concepts can be identified without assuming specific concept types, functional relations, or parametric generative models. Interestingly, even when conditions are not globally satisfied, we can still provide alternative guarantees for as many concepts as possible based on local comparisons, thereby extending the applicability of our theory to more flexible scenarios. Moreover, the hidden structure between classes and concepts can also be identified nonparametrically. We validate our theoretical results in both synthetic and real-world settings.

cs.LG↗

arXiv2025

Causal evidence for the primordiality of colours in trans-Neptunian objects

The origins of the colours of Trans-Neptunian Objects (TNOs) represent a crucial unresolved question, central to understanding the history of our Solar System. Recent observational surveys revealed correlations between the eccentricity and inclination of TNOs, and their colours. This rekindled the long-standing debate on whether these colours reflect the conditions of TNO formation or their subsequent evolution. We address this question using a model-agnostic, data-driven approach that unanimously converges to a common causal graph from the analysis of two different datasets, each from two different conditional independence test methods. For evaluation, we demonstrate how our model is consistent with the currently-accepted paradigms of TNOs' dynamical histories, without involving any orbital modelling or physics-based assumptions. Our causal model (with no knowledge of the existence of Neptune) predicts the need for an unknown confounding variable, consistent with Neptune's effects. The model predicts that the colour of TNOs is the root cause of their inclination distribution, rather than the other way around. This strongly suggests that the colours of TNOs reflect an underlying dynamical property, most likely their formation location. Our model excludes formation scenarios that invoke substantial colour modification by subsequent evolution. We conclude that the colours of TNOs are predominantly primordial.

astro-ph.EP↗

arXiv2025

Are All Prompt Components Value-Neutral? Understanding the Heterogeneous Adversarial Robustness of Dissected Prompt in Large Language Models

Prompt-based adversarial attacks have become an effective means to assess the robustness of large language models (LLMs). However, existing approaches often treat prompts as monolithic text, overlooking their structural heterogeneity-different prompt components contribute unequally to adversarial robustness. Prior works like PromptRobust assume prompts are value-neutral, but our analysis reveals that complex, domain-specific prompts with rich structures have components with differing vulnerabilities. To address this gap, we introduce PromptAnatomy, an automated framework that dissects prompts into functional components and generates diverse, interpretable adversarial examples by selectively perturbing each component using our proposed method, ComPerturb. To ensure linguistic plausibility and mitigate distribution shifts, we further incorporate a perplexity (PPL)-based filtering mechanism. As a complementary resource, we annotate four public instruction-tuning datasets using the PromptAnatomy framework, verified through human review. Extensive experiments across these datasets and five advanced LLMs demonstrate that ComPerturb achieves state-of-the-art attack success rates. Ablation studies validate the complementary benefits of prompt dissection and PPL filtering. Our results underscore the importance of prompt structure awareness and controlled perturbation for reliable adversarial robustness evaluation in LLMs. Code and data are available at https://github.com/Yujiaaaaa/PACP.

cs.CL↗

arXiv2025

Butterfly Effects in Toolchains: A Comprehensive Analysis of Failed Parameter Filling in LLM Tool-Agent Systems

The emergence of the tool agent paradigm has broadened the capability boundaries of the Large Language Model (LLM), enabling it to complete more complex tasks. However, the effectiveness of this paradigm is limited due to the issue of parameter failure during its execution. To explore this phenomenon and propose corresponding suggestions, we first construct a parameter failure taxonomy in this paper. We derive five failure categories from the invocation chain of a mainstream tool agent. Then, we explore the correlation between three different input sources and failure categories by applying 15 input perturbation methods to the input. Experimental results show that parameter name hallucination failure primarily stems from inherent LLM limitations, while issues with input sources mainly cause other failure patterns. To improve the reliability and effectiveness of tool-agent interactions, we propose corresponding improvement suggestions, including standardizing tool return formats, improving error feedback mechanisms, and ensuring parameter consistency.

cs.SE↗

arXiv2025

Causal Evidence for the Primordiality of Colors in Trans-Neptunian Objects

The origins of the colors of Trans-Neptunian Objects (TNOs) represent a crucial unresolved question, central to understanding the history of our Solar System. Recent observational surveys have revealed correlations between the eccentricity and inclination of TNOs and their colors. This has rekindled the long-standing debate on whether these colors reflect the conditions of TNO formation or their subsequent collisional evolution. In this study, we address this question with 98.7% certainty, using a model-agnostic, data-driven approach based on causal graphs. First, as a sanity check, we demonstrate how our model can replicate the currently accepted paradigms of TNOs' dynamical history, blindly and without any orbital modeling or physics-based assumptions. In fact, our causal model (with no knowledge of the existence of Neptune) predicts the existence of an unknown perturbing body, i.e., Neptune. We then show how this model predicts, with high certainty, that the color of TNOs is the root cause of their inclination distribution, rather than the other way around. This strongly suggests that the colors of TNOs reflect an underlying dynamical property, most likely their formation location. Moreover, our causal model excludes formation scenarios that invoke substantial color modification by subsequent irradiation. We therefore conclude that the colors of TNOs are predominantly primordial.

astro-ph.EP↗

arXiv2025

Causal Discovery of Latent Variables in Galactic Archaeology

Galactic archaeology--the study of stellar migration histories--provides insights into galaxy formation and evolution. However, establishing causal relationships between observable stellar properties and their birth conditions remains challenging, as key properties like birth radius are not directly observable. We employ Rank-based Latent Causal Discovery (RLCD) to uncover the causal structure governing the chemodynamics of a simulated Milky Way galaxy. Using only five observable properties (metallicity, age, and orbital parameters), we recover in a purely data-driven manner a causal graph containing two latent nodes that correspond to real physical properties: the birth radius and guiding radius of stars. Our study demonstrates the potential of causal discovery models in astrophysics.

astro-ph.GA↗

arXiv2025

Position: Mechanistic Interpretability Should Prioritize Feature Consistency in SAEs

Sparse Autoencoders (SAEs) are a prominent tool in mechanistic interpretability (MI) for decomposing neural network activations into interpretable features. However, the aspiration to identify a canonical set of features is challenged by the observed inconsistency of learned SAE features across different training runs, undermining the reliability and efficiency of MI research. This position paper argues that mechanistic interpretability should prioritize feature consistency in SAEs -- the reliable convergence to equivalent feature sets across independent runs. We propose using the Pairwise Dictionary Mean Correlation Coefficient (PW-MCC) as a practical metric to operationalize consistency and demonstrate that high levels are achievable (0.80 for TopK SAEs on LLM activations) with appropriate architectural choices. Our contributions include detailing the benefits of prioritizing consistency; providing theoretical grounding and synthetic validation using a model organism, which verifies PW-MCC as a reliable proxy for ground-truth recovery; and extending these findings to real-world LLM data, where high feature consistency strongly correlates with the semantic similarity of learned feature explanations. We call for a community-wide shift towards systematically measuring feature consistency to foster robust cumulative progress in MI.

cs.LG↗

arXiv2025

Nonparametric Factor Analysis and Beyond

Nearly all identifiability results in unsupervised representation learning inspired by, e.g., independent component analysis, factor analysis, and causal representation learning, rely on assumptions of additive independent noise or noiseless regimes. In contrast, we study the more general case where noise can take arbitrary forms, depend on latent variables, and be non-invertibly entangled within a nonlinear function. We propose a general framework for identifying latent variables in the nonparametric noisy settings. We first show that, under suitable conditions, the generative model is identifiable up to certain submanifold indeterminacies even in the presence of non-negligible noise. Furthermore, under the structural or distributional variability conditions, we prove that latent variables of the general nonlinear models are identifiable up to trivial indeterminacies. Based on the proposed theoretical framework, we have also developed corresponding estimation methods and validated them in various synthetic and real-world settings. Interestingly, our estimate of the true GDP growth from alternative measurements suggests more insightful information on the economies than official reports. We expect our framework to provide new insight into how both researchers and practitioners deal with latent variables in real-world scenarios.

cs.LG↗

arXiv2025

Causal Representation Learning from Multimodal Biomedical Observations

Prevalent in biomedical applications (e.g., human phenotype research), multimodal datasets can provide valuable insights into the underlying physiological mechanisms. However, current machine learning (ML) models designed to analyze these datasets often lack interpretability and identifiability guarantees, which are essential for biomedical research. Recent advances in causal representation learning have shown promise in identifying interpretable latent causal variables with formal theoretical guarantees. Unfortunately, most current work on multimodal distributions either relies on restrictive parametric assumptions or yields only coarse identification results, limiting their applicability to biomedical research that favors a detailed understanding of the mechanisms. In this work, we aim to develop flexible identification conditions for multimodal data and principled methods to facilitate the understanding of biomedical datasets. Theoretically, we consider a nonparametric latent distribution (c.f., parametric assumptions in previous work) that allows for causal relationships across potentially different modalities. We establish identifiability guarantees for each latent component, extending the subspace identification results from previous work. Our key theoretical contribution is the structural sparsity of causal connections between modalities, which, as we will discuss, is natural for a large collection of biomedical systems. Empirically, we present a practical framework to instantiate our theoretical insights. We demonstrate the effectiveness of our approach through extensive experiments on both numerical and synthetic datasets. Results on a real-world human phenotype dataset are consistent with established biomedical research, validating our theoretical and methodological framework.

cs.LG↗