arXiv subjects

Yujia Zheng

Publications and source records attributed to Yujia Zheng.

66 records · Page 4Linked to original sources

arXiv2023

Generalizing Nonlinear ICA Beyond Structural Sparsity

Nonlinear independent component analysis (ICA) aims to uncover the true latent sources from their observable nonlinear mixtures. Despite its significance, the identifiability of nonlinear ICA is known to be impossible without additional assumptions. Recent advances have proposed conditions on the connective structure from sources to observed variables, known as Structural Sparsity, to achieve identifiability in an unsupervised manner. However, the sparsity constraint may not hold universally for all sources in practice. Furthermore, the assumptions of bijectivity of the mixing process and independence among all sources, which arise from the setting of ICA, may also be violated in many real-world scenarios. To address these limitations and generalize nonlinear ICA, we propose a set of new identifiability results in the general settings of undercompleteness, partial sparsity and source dependence, and flexible grouping structures. Specifically, we prove identifiability when there are more observed variables than sources (undercomplete), and when certain sparsity and/or source independence assumptions are not met for some changing sources. Moreover, we show that even in cases with flexible grouping structures (e.g., part of the sources can be divided into irreducible independent groups with various sizes), appropriate identifiability results can also be established. Theoretical claims are supported empirically on both synthetic and real-world datasets.

cs.LG↗

arXiv2023

Causal-learn: Causal Discovery in Python

Causal discovery aims at revealing causal relations from observational data, which is a fundamental task in science and engineering. We describe $\textit{causal-learn}$, an open-source Python library for causal discovery. This library focuses on bringing a comprehensive collection of causal discovery methods to both practitioners and researchers. It provides easy-to-use APIs for non-specialists, modular building blocks for developers, detailed documentation for learners, and comprehensive methods for all. Different from previous packages in R or Java, $\textit{causal-learn}$ is fully developed in Python, which could be more in tune with the recent preference shift in programming languages within related communities. The library is available at https://github.com/py-why/causal-learn.

cs.LG↗

arXiv2023

Understanding Breast Cancer Survival: Using Causality and Language Models on Multi-omics Data

The need for more usable and explainable machine learning models in healthcare increases the importance of developing and utilizing causal discovery algorithms, which aim to discover causal relations by analyzing observational data. Explainable approaches aid clinicians and biologists in predicting the prognosis of diseases and suggesting proper treatments. However, very little research has been conducted at the crossroads between causal discovery, genomics, and breast cancer, and we aim to bridge this gap. Moreover, evaluation of causal discovery methods on real data is in general notoriously difficult because ground-truth causal relations are usually unknown, and accordingly, in this paper, we also propose to address the evaluation problem with large language models. In particular, we exploit suitable causal discovery algorithms to investigate how various perturbations in the genome can affect the survival of patients diagnosed with breast cancer. We used three main causal discovery algorithms: PC, Greedy Equivalence Search (GES), and a Generalized Precision Matrix-based one. We experiment with a subset of The Cancer Genome Atlas, which contains information about mutations, copy number variations, protein levels, and gene expressions for 705 breast cancer patients. Our findings reveal important factors related to the vital status of patients using causal discovery algorithms. However, the reliability of these results remains a concern in the medical domain. Accordingly, as another contribution of the work, the results are validated through language models trained on biomedical literature, such as BlueBERT and other large language models trained on medical corpora. Our results profess proper utilization of causal discovery algorithms and language models for revealing reliable causal relations for clinical applications.

cs.LG↗

arXiv2023

Generalized Precision Matrix for Scalable Estimation of Nonparametric Markov Networks

A Markov network characterizes the conditional independence structure, or Markov property, among a set of random variables. Existing work focuses on specific families of distributions (e.g., exponential families) and/or certain structures of graphs, and most of them can only handle variables of a single data type (continuous or discrete). In this work, we characterize the conditional independence structure in general distributions for all data types (i.e., continuous, discrete, and mixed-type) with a Generalized Precision Matrix (GPM). Besides, we also allow general functional relations among variables, thus giving rise to a Markov network structure learning algorithm in one of the most general settings. To deal with the computational challenge of the problem, especially for large graphs, we unify all cases under the same umbrella of a regularized score matching framework. We validate the theoretical results and demonstrate the scalability empirically in various settings.

cs.LG↗

arXiv2022

Learning Task-Aware Effective Brain Connectivity for fMRI Analysis with Graph Neural Networks

Functional magnetic resonance imaging (fMRI) has become one of the most common imaging modalities for brain function analysis. Recently, graph neural networks (GNN) have been adopted for fMRI analysis with superior performance. Unfortunately, traditional functional brain networks are mainly constructed based on similarities among region of interests (ROI), which are noisy and agnostic to the downstream prediction tasks and can lead to inferior results for GNN-based models. To better adapt GNNs for fMRI analysis, we propose TBDS, an end-to-end framework based on \underline{T}ask-aware \underline{B}rain connectivity \underline{D}AG (short for Directed Acyclic Graph) \underline{S}tructure generation for fMRI analysis. The key component of TBDS is the brain network generator which adopts a DAG learning approach to transform the raw time-series into task-aware brain connectivities. Besides, we design an additional contrastive regularization to inject task-specific knowledge during the brain network generation process. Comprehensive experiments on two fMRI datasets, namely Adolescent Brain Cognitive Development (ABCD) and Philadelphia Neuroimaging Cohort (PNC) datasets demonstrate the efficacy of TBDS. In addition, the generated brain networks also highlight the prediction-related brain regions and thus provide unique interpretations of the prediction results. Our implementation will be published to https://github.com/yueyu1030/TBDS upon acceptance.

q-bio.NC↗

arXiv2022

Reliable Causal Discovery with Improved Exact Search and Weaker Assumptions

Many of the causal discovery methods rely on the faithfulness assumption to guarantee asymptotic correctness. However, the assumption can be approximately violated in many ways, leading to sub-optimal solutions. Although there is a line of research in Bayesian network structure learning that focuses on weakening the assumption, such as exact search methods with well-defined score functions, they do not scale well to large graphs. In this work, we introduce several strategies to improve the scalability of exact score-based methods in the linear Gaussian setting. In particular, we develop a super-structure estimation method based on the support of inverse covariance matrix which requires assumptions that are strictly weaker than faithfulness, and apply it to restrict the search space of exact search. We also propose a local search strategy that performs exact search on the local clusters formed by each variable and its neighbors within two hops in the super-structure. Numerical experiments validate the efficacy of the proposed procedure, and demonstrate that it scales up to hundreds of nodes with a high accuracy.

cs.LG↗

arXiv2021

Learning Elastic Embeddings for Customizing On-Device Recommenders

In today's context, deploying data-driven services like recommendation on edge devices instead of cloud servers becomes increasingly attractive due to privacy and network latency concerns. A common practice in building compact on-device recommender systems is to compress their embeddings which are normally the cause of excessive parameterization. However, despite the vast variety of devices and their associated memory constraints, existing memory-efficient recommender systems are only specialized for a fixed memory budget in every design and training life cycle, where a new model has to be retrained to obtain the optimal performance while adapting to a smaller/larger memory budget. In this paper, we present a novel lightweight recommendation paradigm that allows a well-trained recommender to be customized for arbitrary device-specific memory constraints without retraining. The core idea is to compose elastic embeddings for each item, where an elastic embedding is the concatenation of a set of embedding blocks that are carefully chosen by an automated search function. Correspondingly, we propose an innovative approach, namely recommendation with universally learned elastic embeddings (RULE). To ensure the expressiveness of all candidate embedding blocks, RULE enforces a diversity-driven regularization when learning different embedding blocks. Then, a performance estimator-based evolutionary search function is designed, allowing for efficient specialization of elastic embeddings under any memory constraint for on-device recommendation. Extensive experiments on real-world datasets reveal the superior performance of RULE under tight memory budgets.

cs.IR↗

arXiv2020

Cold-start Sequential Recommendation via Meta Learner

This paper explores meta-learning in sequential recommendation to alleviate the item cold-start problem. Sequential recommendation aims to capture user's dynamic preferences based on historical behavior sequences and acts as a key component of most online recommendation scenarios. However, most previous methods have trouble recommending cold-start items, which are prevalent in those scenarios. As there is generally no side information in the setting of sequential recommendation task, previous cold-start methods could not be applied when only user-item interactions are available. Thus, we propose a Meta-learning-based Cold-Start Sequential Recommendation Framework, namely Mecos, to mitigate the item cold-start problem in sequential recommendation. This task is non-trivial as it targets at an important problem in a novel and challenging context. Mecos effectively extracts user preference from limited interactions and learns to match the target cold-start item with the potential user. Besides, our framework can be painlessly integrated with neural network-based models. Extensive experiments conducted on three real-world datasets verify the superiority of Mecos, with the average improvement up to 99%, 91%, and 70% in HR@10 over state-of-the-art baseline methods.

cs.IR↗

arXiv2020

Heterogeneous Graph Collaborative Filtering

Graph-based collaborative filtering (CF) algorithms have gained increasing attention. Existing work in this literature usually models the user-item interactions as a bipartite graph, where users and items are two isolated node sets and edges between them indicate their interactions. Then, the unobserved preference of users can be exploited by modeling high-order connectivity on the bipartite graph. In this work, we propose to model user-item interactions as a heterogeneous graph which consists of not only user-item edges indicating their interaction but also user-user edges indicating their similarity. We develop heterogeneous graph collaborative filtering (HGCF), a GCN-based framework which can explicitly capture both the interaction signal and similarity signal through embedding propagation on the heterogeneous graph. Since the heterogeneous graph is more connected than the bipartite graph, the sparsity issue can be alleviated and the demand for expensive high-order connectivity modeling can be lowered. Extensive experiments conducted on three public benchmarks demonstrate its superiority over the state-of-the-arts. Further analysis verifies the importance of user-user edges in the graph, justifying the rationality and effectiveness of HGCF.

cs.IR↗

arXiv2020

DGTN: Dual-channel Graph Transition Network for Session-based Recommendation

The task of session-based recommendation is to predict user actions based on anonymous sessions. Recent research mainly models the target session as a sequence or a graph to capture item transitions within it, ignoring complex transitions between items in different sessions that have been generated by other users. These item transitions include potential collaborative information and reflect similar behavior patterns, which we assume may help with the recommendation for the target session. In this paper, we propose a novel method, namely Dual-channel Graph Transition Network (DGTN), to model item transitions within not only the target session but also the neighbor sessions. Specifically, we integrate the target session and its neighbor (similar) sessions into a single graph. Then the transition signals are explicitly injected into the embedding by channel-aware propagation. Experiments on real-world datasets demonstrate that DGTN outperforms other state-of-the-art methods. Further analysis verifies the rationality of dual-channel item transition modeling, suggesting a potential future direction for session-based recommendation.

cs.IR↗

arXiv2020

Long-tail Session-based Recommendation

Session-based recommendation focuses on the prediction of user actions based on anonymous sessions and is a necessary method in the lack of user historical data. However, none of the existing session-based recommendation methods explicitly takes the long-tail recommendation into consideration, which plays an important role in improving the diversity of recommendation and producing the serendipity. As the distribution of items with long-tail is prevalent in session-based recommendation scenarios (e.g., e-commerce, music, and TV program recommendations), more attention should be put on the long-tail session-based recommendation. In this paper, we propose a novel network architecture, namely TailNet, to improve long-tail recommendation performance, while maintaining competitive accuracy performance compared with other methods. We start by classifying items into short-head (popular) and long-tail (niche) items based on click frequency. Then a novel is proposed and applied in TailNet to determine user preference between two types of items, so as to softly adjust and personalize recommendations. Extensive experiments on two real-world datasets verify the superiority of our method compared with state-of-the-art works.

cs.IR↗

arXiv2019

Balancing Multi-level Interactions for Session-based Recommendation

Predicting user actions based on anonymous sessions is a challenge to general recommendation systems because the lack of user profiles heavily limits data-driven models. Recently, session-based recommendation methods have achieved remarkable results in dealing with this task. However, the upper bound of performance can still be boosted through the innovative exploration of limited data. In this paper, we propose a novel method, namely Intra-and Inter-session Interaction-aware Graph-enhanced Network, to take inter-session item-level interactions into account. Different from existing intra-session item-level interactions and session-level collaborative information, our introduced data represents complex item-level interactions between different sessions. For mining the new data without breaking the equilibrium of the model between different interactions, we construct an intra-session graph and an inter-session graph for the current session. The former focuses on item-level interactions within a single session and the latter models those between items among neighborhood sessions. Then different approaches are employed to encode the information of two graphs according to different structures, and the generated latent vectors are combined to balance the model across different scopes. Experiments on real-world datasets verify that our method outperforms other state-of-the-art methods.

cs.IR↗